Wall clock time and date at job start Sat Apr 11 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30988 * 1 3 3 C 1.50700 * 120.00206 * 2 1 4 4 C 1.52999 * 109.47294 * 240.00431 * 3 2 1 5 5 C 1.52996 * 109.47434 * 120.00188 * 3 2 1 6 6 C 1.52996 * 109.47270 * 59.99991 * 5 3 2 7 7 O 1.42903 * 109.47209 * 180.02562 * 6 5 3 8 8 C 1.42900 * 113.99733 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47059 * 359.97438 * 3 2 1 10 10 O 1.21274 * 119.99882 * 119.99935 * 9 3 2 11 11 N 1.34773 * 119.99915 * 300.00391 * 9 3 2 12 12 C 1.46501 * 119.99945 * 179.97438 * 11 9 3 13 13 C 1.53513 * 114.17190 * 154.99653 * 12 11 9 14 14 N 1.47484 * 87.93060 * 87.62367 * 13 12 11 15 15 C 1.46895 * 110.99756 * 138.70311 * 14 13 12 16 16 C 1.50706 * 109.47182 * 170.00145 * 15 14 13 17 17 O 1.21297 * 119.99667 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00081 * 179.72734 * 16 15 14 19 19 C 1.37095 * 119.99878 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00160 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00380 * 179.97438 * 19 18 16 22 22 N 1.31404 * 120.00261 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99599 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47644 * 89.99834 * 23 21 19 25 25 H 1.48506 * 109.47143 * 209.99780 * 23 21 19 26 26 H 1.48501 * 109.47120 * 329.99495 * 23 21 19 27 27 C 1.47477 * 87.83167 * 27.01125 * 14 13 12 28 28 H 1.08000 * 120.00493 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99994 * 180.02562 * 1 2 3 30 30 H 1.08006 * 120.00579 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47416 * 179.97438 * 4 3 2 32 32 H 1.09005 * 109.46922 * 299.99728 * 4 3 2 33 33 H 1.08997 * 109.47351 * 59.99191 * 4 3 2 34 34 H 1.09002 * 109.47342 * 179.97438 * 5 3 2 35 35 H 1.09005 * 109.47260 * 300.00192 * 5 3 2 36 36 H 1.09004 * 109.47353 * 300.00014 * 6 5 3 37 37 H 1.09006 * 109.47316 * 60.00088 * 6 5 3 38 38 H 1.09005 * 109.47484 * 60.00334 * 8 7 6 39 39 H 1.09007 * 109.46945 * 180.02562 * 8 7 6 40 40 H 1.09003 * 109.47808 * 300.00324 * 8 7 6 41 41 H 0.96996 * 120.00344 * 359.97438 * 11 9 3 42 42 H 1.09001 * 113.38112 * 21.92527 * 12 11 9 43 43 H 1.09005 * 113.47855 * 332.86242 * 13 12 11 44 44 H 1.08997 * 113.53455 * 202.39823 * 13 12 11 45 45 H 1.09001 * 109.47613 * 50.00491 * 15 14 13 46 46 H 1.08998 * 109.47678 * 290.00386 * 15 14 13 47 47 H 0.96998 * 120.00525 * 359.97438 * 18 16 15 48 48 H 0.97009 * 120.00065 * 180.02562 * 22 21 19 49 49 H 1.09000 * 113.48071 * 87.76093 * 27 14 13 50 50 H 1.09004 * 113.47566 * 218.21901 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9430 1.3862 -1.2493 5 6 2.9431 1.3861 1.2492 6 6 3.9373 0.2233 1.2492 7 8 4.7585 0.2986 2.4162 8 6 5.7267 -0.7478 2.5142 9 6 1.0841 2.4506 -0.0006 10 8 1.0889 3.2529 0.9088 11 7 0.2030 2.5833 -1.0118 12 6 -0.7493 3.6965 -1.0121 13 6 -1.2501 4.0949 -2.4075 14 7 -2.3130 3.0836 -2.2562 15 6 -3.5958 3.5883 -2.7636 16 6 -4.5923 2.4592 -2.8215 17 8 -4.2660 1.3439 -2.4738 18 7 -5.8478 2.6900 -3.2539 19 6 -6.7544 1.6630 -3.3061 20 1 -6.4625 0.6689 -3.0010 21 6 -8.0489 1.9009 -3.7514 22 7 -8.9178 0.9164 -3.8019 23 14 -8.5537 3.6201 -4.2797 24 1 -8.2889 3.7898 -5.7310 25 1 -10.0020 3.8141 -4.0148 26 1 -7.7716 4.6231 -3.5132 27 6 -2.2096 3.2746 -0.7975 28 1 -0.5401 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 3.4877 2.3303 -1.2495 32 1 3.6513 0.5577 -1.2493 33 1 2.3163 1.3284 -2.1392 34 1 3.4885 2.3299 1.2489 35 1 2.3165 1.3284 2.1392 36 1 3.3923 -0.7208 1.2492 37 1 4.5640 0.2809 0.3591 38 1 6.3909 -0.7105 1.6507 39 1 6.3091 -0.6198 3.4267 40 1 5.2185 -1.7118 2.5402 41 1 0.1994 1.9418 -1.7393 42 1 -0.4323 4.5372 -0.3950 43 1 -0.5429 3.8655 -3.2046 44 1 -1.6269 5.1163 -2.4595 45 1 -3.4547 3.9999 -3.7630 46 1 -3.9682 4.3678 -2.0989 47 1 -6.1101 3.5828 -3.5276 48 1 -9.8215 1.0824 -4.1131 49 1 -2.8423 4.0772 -0.4186 50 1 -2.3155 2.3500 -0.2299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318047577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:07 Heat of formation + Delta-G solvation = -73.883875 kcal Electronic energy + Delta-G solvation = -29746.367005 eV Core-core repulsion = 25582.086469 eV Total energy + Delta-G solvation = -4164.280536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.07979 -40.91752 -39.70813 -38.87845 -37.12913 -35.99116 -35.07315 -33.74341 -32.65374 -31.27721 -29.93607 -27.47766 -27.22316 -26.95097 -25.98530 -24.95056 -23.04804 -22.63925 -21.33355 -20.85825 -20.28622 -19.85706 -17.87382 -17.76847 -17.64877 -17.30071 -16.96329 -16.89492 -16.69922 -16.35912 -16.29785 -15.77548 -15.48641 -15.15622 -14.92195 -14.76528 -14.65051 -14.54369 -14.33727 -14.09264 -13.73488 -13.66273 -13.52328 -13.12595 -13.00283 -12.79428 -12.61310 -12.58706 -12.42373 -12.32161 -12.22769 -11.97965 -11.92832 -11.82657 -11.64445 -11.49882 -10.82533 -10.54952 -10.45145 -10.42319 -10.23656 -10.02933 -9.72642 -8.41050 -6.01798 1.24207 1.29468 1.35544 1.44212 1.50308 1.98580 2.00076 2.23002 2.68176 2.87447 3.14237 3.25588 3.42697 3.50681 3.65468 3.76959 3.92711 4.11828 4.13483 4.21231 4.22528 4.25673 4.33985 4.37780 4.46310 4.49507 4.50526 4.57205 4.58114 4.64263 4.77145 4.79483 4.83643 4.85209 4.88831 4.95693 5.05206 5.14784 5.29454 5.32085 5.48045 5.53686 5.57676 5.66511 5.89221 6.00413 6.26642 6.47622 6.60621 6.89674 7.14396 7.41375 8.00039 8.76830 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.001996 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.185304 B =14022.164427 C =14666.429020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.040 4.040 4 C -0.140 4.140 5 C -0.086 4.086 6 C 0.061 3.939 7 O -0.422 6.422 8 C 0.025 3.975 9 C 0.528 3.472 10 O -0.575 6.575 11 N -0.692 5.692 12 C 0.120 3.880 13 C 0.004 3.996 14 N -0.470 5.470 15 C 0.017 3.983 16 C 0.452 3.548 17 O -0.609 6.609 18 N -0.594 5.594 19 C -0.328 4.328 20 H 0.052 0.948 21 C -0.017 4.017 22 N -0.936 5.936 23 Si 0.967 3.033 24 H -0.256 1.256 25 H -0.277 1.277 26 H -0.231 1.231 27 C -0.016 4.016 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.147 0.853 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.049 0.951 41 H 0.414 0.586 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.124 0.876 46 H 0.093 0.907 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.092 0.908 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.121 7.017 3.882 29.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.161 4.161 3 C -0.043 4.043 4 C -0.197 4.197 5 C -0.124 4.124 6 C -0.015 4.015 7 O -0.342 6.342 8 C -0.071 4.071 9 C 0.315 3.685 10 O -0.454 6.454 11 N -0.343 5.343 12 C 0.013 3.987 13 C -0.125 4.125 14 N -0.193 5.193 15 C -0.114 4.114 16 C 0.239 3.761 17 O -0.493 6.493 18 N -0.237 5.237 19 C -0.457 4.457 20 H 0.071 0.929 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.786 3.214 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.154 1.154 27 C -0.147 4.147 28 H 0.109 0.891 29 H 0.122 0.878 30 H 0.164 0.836 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.252 0.748 42 H 0.133 0.867 43 H 0.123 0.877 44 H 0.130 0.870 45 H 0.142 0.858 46 H 0.111 0.889 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.110 0.890 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 28.168 6.236 4.516 29.202 hybrid contribution -1.569 0.450 -0.256 1.653 sum 26.599 6.686 4.259 27.755 Atomic orbital electron populations 1.24365 0.96829 1.02977 0.99919 1.22834 0.95084 0.97330 1.00849 1.19857 0.94560 0.91041 0.98832 1.21961 0.99502 1.04187 0.94075 1.21160 0.96226 0.99137 0.95842 1.22710 0.92467 0.98090 0.88197 1.87839 1.50262 1.51444 1.44651 1.22926 0.91275 0.89850 1.03021 1.20794 0.80805 0.85924 0.80937 1.90683 1.72356 1.45496 1.36834 1.45705 1.33815 1.29392 1.25370 1.21942 0.87582 0.90342 0.98788 1.24340 0.94175 0.96972 0.97028 1.68781 1.03645 1.39428 1.07446 1.22502 0.90472 0.93990 1.04484 1.20960 0.83009 0.90908 0.81191 1.90543 1.79110 1.26996 1.52610 1.42050 1.10442 1.10296 1.60881 1.18986 0.92310 0.90999 1.43412 0.92946 1.26131 0.94759 1.03814 0.96817 1.69811 1.05866 1.34660 1.47381 0.85343 0.78851 0.77216 0.79945 1.18056 1.20181 1.15412 1.24464 0.97513 1.01346 0.91342 0.89054 0.87778 0.83584 0.91287 0.88834 0.90858 0.91193 0.92848 0.91968 0.90709 0.92653 0.88930 0.93230 0.74799 0.86737 0.87653 0.87040 0.85842 0.88872 0.77532 0.91209 0.89021 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.62 13.17 67.79 0.89 -3.73 16 2 C -0.14 -2.46 8.00 25.66 0.21 -2.26 16 3 C -0.04 -0.69 0.62 -53.67 -0.03 -0.72 16 4 C -0.14 -1.56 8.00 71.98 0.58 -0.99 16 5 C -0.09 -1.65 3.92 30.59 0.12 -1.53 16 6 C 0.06 0.89 5.33 71.98 0.38 1.27 16 7 O -0.42 -7.82 10.70 -148.98 -1.59 -9.42 16 8 C 0.03 0.28 11.01 113.37 1.25 1.53 16 9 C 0.53 12.31 5.34 87.66 0.47 12.78 16 10 O -0.57 -17.66 15.58 -3.01 -0.05 -17.71 16 11 N -0.69 -14.44 3.55 -441.71 -1.57 -16.01 16 12 C 0.12 2.49 4.59 45.44 0.21 2.70 16 13 C 0.00 0.06 7.45 83.57 0.62 0.68 16 14 N -0.47 -12.88 5.82 -932.63 -5.43 -18.31 16 15 C 0.02 0.49 5.30 85.56 0.45 0.94 16 16 C 0.45 20.25 7.85 87.66 0.69 20.94 16 17 O -0.61 -34.08 16.01 -3.08 -0.05 -34.13 16 18 N -0.59 -27.87 5.09 -306.98 -1.56 -29.43 16 19 C -0.33 -19.30 10.16 84.04 0.85 -18.45 16 20 H 0.05 3.70 7.39 -2.91 -0.02 3.67 16 21 C -0.02 -0.94 5.50 84.93 0.47 -0.48 16 22 N -0.94 -56.77 13.96 21.66 0.30 -56.47 16 23 Si 0.97 38.62 27.74 68.60 1.90 40.52 16 24 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 25 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 26 H -0.23 -7.69 6.52 99.48 0.65 -7.04 16 27 C -0.02 -0.43 7.52 83.57 0.63 0.20 16 28 H 0.09 2.48 4.74 -2.91 -0.01 2.46 16 29 H 0.10 2.36 8.06 -2.91 -0.02 2.34 16 30 H 0.15 1.77 7.00 -2.91 -0.02 1.75 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.09 0.66 6.43 -2.38 -0.02 0.65 16 33 H 0.07 0.74 7.56 -2.39 -0.02 0.73 16 34 H 0.07 1.48 8.10 -2.39 -0.02 1.46 16 35 H 0.05 1.30 8.10 -2.38 -0.02 1.28 16 36 H 0.06 0.77 6.62 -2.39 -0.02 0.76 16 37 H 0.07 0.75 6.43 -2.38 -0.02 0.74 16 38 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 39 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.41 8.08 7.52 -92.71 -0.70 7.38 16 42 H 0.11 2.35 7.46 -2.39 -0.02 2.34 16 43 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.11 1.30 7.91 -2.39 -0.02 1.28 16 45 H 0.12 2.76 8.08 -2.39 -0.02 2.74 16 46 H 0.09 2.14 7.30 -2.39 -0.02 2.12 16 47 H 0.39 14.93 5.76 -92.71 -0.53 14.40 16 48 H 0.28 15.42 8.31 -92.70 -0.77 14.65 16 49 H 0.09 2.11 7.42 -2.39 -0.02 2.09 16 50 H 0.06 1.89 7.70 -2.38 -0.02 1.87 16 Total: -1.00 -85.15 401.52 -0.59 -85.74 By element: Atomic # 1 Polarization: 42.64 SS G_CDS: -0.33 Total: 42.32 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 7.78 Total: 12.90 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -8.26 Total: -120.22 kcal Atomic # 8 Polarization: -59.56 SS G_CDS: -1.69 Total: -61.25 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.90 Total: 40.52 kcal Total: -85.15 -0.59 -85.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318047577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.857 kcal (2) G-P(sol) polarization free energy of solvation -85.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds