Wall clock time and date at job start Sat Apr 11 2020 05:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.47063 * 2 1 4 4 H 1.09004 * 109.46689 * 55.00462 * 3 2 1 5 5 C 1.53004 * 109.46689 * 174.99924 * 3 2 1 6 6 O 1.42890 * 109.47095 * 295.00159 * 3 2 1 7 7 C 1.42909 * 113.99746 * 149.99837 * 6 3 2 8 8 C 1.50696 * 109.46835 * 179.97438 * 7 6 3 9 9 O 1.21277 * 120.00796 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99514 * 180.02562 * 8 7 6 11 11 C 1.47856 * 126.93004 * 0.02562 * 10 8 7 12 12 C 1.56022 * 105.11743 * 181.91793 * 11 10 8 13 13 H 1.09000 * 116.25948 * 159.70334 * 12 11 10 14 14 C 1.57088 * 99.59546 * 32.81046 * 12 11 10 15 15 C 1.49279 * 126.92604 * 180.02562 * 10 8 7 16 16 H 1.09007 * 116.12638 * 16.01866 * 15 10 8 17 17 C 1.56009 * 104.12952 * 246.90777 * 15 10 8 18 18 N 1.48287 * 105.06679 * 288.79627 * 17 15 10 19 19 C 1.46899 * 110.99706 * 122.54482 * 18 17 15 20 20 C 1.50700 * 109.47222 * 76.51006 * 19 18 17 21 21 O 1.21288 * 120.00045 * 0.02562 * 20 19 18 22 22 N 1.34779 * 120.00158 * 179.97438 * 20 19 18 23 23 C 1.37091 * 120.00149 * 180.02562 * 22 20 19 24 24 H 1.07991 * 120.00120 * 359.97438 * 23 22 20 25 25 C 1.38955 * 120.00025 * 180.02562 * 23 22 20 26 26 N 1.31414 * 119.99999 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00060 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.47255 * 59.99848 * 27 25 23 29 29 H 1.48494 * 109.47190 * 180.02562 * 27 25 23 30 30 H 1.48505 * 109.47030 * 300.00175 * 27 25 23 31 31 H 1.08998 * 109.46862 * 59.99434 * 1 2 3 32 32 H 1.08997 * 109.46761 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46884 * 299.99561 * 1 2 3 34 34 H 1.08998 * 109.46884 * 240.00439 * 2 1 3 35 35 H 1.08995 * 109.47338 * 120.00389 * 2 1 3 36 36 H 1.08996 * 109.47000 * 300.00302 * 5 3 2 37 37 H 1.09001 * 109.46761 * 60.00419 * 5 3 2 38 38 H 1.09005 * 109.46683 * 180.02562 * 5 3 2 39 39 H 1.08999 * 109.46669 * 60.00461 * 7 6 3 40 40 H 1.08993 * 109.47250 * 299.99915 * 7 6 3 41 41 H 1.09012 * 110.31063 * 63.01059 * 11 10 8 42 42 H 1.08999 * 110.40570 * 300.87915 * 11 10 8 43 43 H 1.09004 * 112.35743 * 64.33322 * 14 12 11 44 44 H 1.08999 * 112.35683 * 191.74986 * 14 12 11 45 45 H 1.09004 * 110.31978 * 169.89734 * 17 15 10 46 46 H 1.08993 * 110.32027 * 47.69517 * 17 15 10 47 47 H 1.09005 * 109.47028 * 196.50900 * 19 18 17 48 48 H 1.08998 * 109.47343 * 316.50989 * 19 18 17 49 49 H 0.97006 * 119.99360 * 0.02562 * 22 20 19 50 50 H 0.96999 * 119.99930 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1257 6 8 1.6620 2.0814 -1.2209 7 6 1.4559 3.4904 -1.1001 8 6 1.0638 4.0574 -2.4401 9 8 0.9696 3.3270 -3.4037 10 7 0.8178 5.3764 -2.5678 11 6 0.8867 6.4001 -1.5032 12 6 0.4607 7.7334 -2.1924 13 1 0.1173 8.5295 -1.5318 14 6 -0.5706 7.1710 -3.2355 15 6 0.4208 6.0983 -3.8127 16 1 0.0597 5.4779 -4.6329 17 6 1.6437 7.0144 -4.1281 18 7 1.6156 8.0676 -3.0847 19 6 2.8748 8.0933 -2.3286 20 6 3.9440 8.7592 -3.1560 21 8 3.6825 9.1723 -4.2660 22 7 5.1904 8.8968 -2.6621 23 6 6.1629 9.5031 -3.4145 24 1 5.9304 9.8701 -4.4032 25 6 7.4481 9.6444 -2.9055 26 7 7.7315 9.1964 -1.7030 27 14 8.7733 10.4698 -3.9310 28 1 8.3588 11.8598 -4.2496 29 1 10.0464 10.4952 -3.1670 30 1 8.9684 9.7101 -5.1920 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.8532 0.9569 1.0571 37 1 3.9995 0.9053 -0.7161 38 1 3.9282 2.4720 0.1262 39 1 2.3769 3.9644 -0.7608 40 1 0.6619 3.6808 -0.3782 41 1 1.9044 6.4802 -1.1206 42 1 0.1977 6.1549 -0.6950 43 1 -1.4389 6.7179 -2.7571 44 1 -0.8555 7.9150 -3.9793 45 1 1.5383 7.4589 -5.1178 46 1 2.5702 6.4438 -4.0652 47 1 2.7316 8.6510 -1.4031 48 1 3.1791 7.0731 -2.0948 49 1 5.3993 8.5668 -1.7741 50 1 8.6285 9.2954 -1.3475 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318192491.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:13 Heat of formation + Delta-G solvation = -100.424794 kcal Electronic energy + Delta-G solvation = -30519.381266 eV Core-core repulsion = 26353.949829 eV Total energy + Delta-G solvation = -4165.431437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.34630 -40.35571 -39.72878 -38.87525 -36.02407 -35.02430 -34.75022 -33.30665 -32.39631 -30.85401 -30.81911 -28.92467 -28.02552 -26.23816 -25.65683 -24.56164 -22.62035 -22.00477 -21.61810 -21.17614 -20.06627 -19.54173 -18.49624 -18.17891 -17.84225 -17.30314 -17.16097 -16.61377 -16.56029 -16.10291 -15.86220 -15.57896 -15.21360 -14.96143 -14.90769 -14.58678 -14.26507 -14.10276 -13.86453 -13.77234 -13.66776 -13.56530 -13.47595 -13.11408 -13.01141 -12.94083 -12.61234 -12.58096 -12.44535 -12.38248 -12.29801 -12.18418 -12.12295 -12.08730 -11.93291 -11.50374 -11.49930 -10.98351 -10.64649 -10.37117 -10.00823 -9.85645 -9.18306 -8.47141 -5.95284 1.38191 1.39930 1.42853 1.50491 1.53680 2.06380 2.26949 2.66152 2.78205 3.18963 3.26206 3.31796 3.52011 3.57176 3.68217 3.86522 3.93653 4.01353 4.07342 4.14160 4.16874 4.21229 4.25759 4.30781 4.41659 4.49786 4.51195 4.55614 4.63909 4.68884 4.70025 4.77034 4.82284 4.92601 4.96145 5.02951 5.04304 5.08959 5.14967 5.21232 5.25803 5.39982 5.42172 5.75601 5.84786 6.06206 6.13078 6.40539 6.60930 7.01112 7.13319 7.56903 8.13736 8.70065 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.002856 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.241638 B = 9799.891359 C =11712.888122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.078 3.922 4 H 0.085 0.915 5 C -0.178 4.178 6 O -0.388 6.388 7 C 0.054 3.946 8 C 0.524 3.476 9 O -0.576 6.576 10 N -0.619 5.619 11 C 0.054 3.946 12 C 0.060 3.940 13 H 0.171 0.829 14 C -0.112 4.112 15 C 0.107 3.893 16 H 0.119 0.881 17 C 0.045 3.955 18 N -0.509 5.509 19 C 0.052 3.948 20 C 0.438 3.562 21 O -0.618 6.618 22 N -0.576 5.576 23 C -0.332 4.332 24 H 0.076 0.924 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.989 3.011 28 H -0.271 1.271 29 H -0.269 1.269 30 H -0.276 1.276 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.024 0.976 47 H 0.123 0.877 48 H 0.063 0.937 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.280 -12.384 12.480 24.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C 0.021 3.979 4 H 0.103 0.897 5 C -0.235 4.235 6 O -0.307 6.307 7 C -0.026 4.026 8 C 0.314 3.686 9 O -0.456 6.456 10 N -0.355 5.355 11 C -0.069 4.069 12 C -0.047 4.047 13 H 0.188 0.812 14 C -0.150 4.150 15 C 0.003 3.997 16 H 0.136 0.864 17 C -0.084 4.084 18 N -0.233 5.233 19 C -0.079 4.079 20 C 0.225 3.775 21 O -0.503 6.503 22 N -0.214 5.214 23 C -0.462 4.462 24 H 0.094 0.906 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.813 3.187 28 H -0.196 1.196 29 H -0.193 1.193 30 H -0.201 1.201 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.119 0.881 45 H 0.090 0.910 46 H 0.043 0.957 47 H 0.141 0.859 48 H 0.081 0.919 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.348 -12.187 10.973 23.873 hybrid contribution 1.656 -0.465 -0.031 1.721 sum -15.692 -12.652 10.942 22.936 Atomic orbital electron populations 1.21712 0.95203 1.02083 1.01657 1.21670 0.96782 0.94253 1.03074 1.22467 0.94658 0.94585 0.86148 0.89679 1.22331 0.95767 1.02409 1.02992 1.88030 1.89732 1.18634 1.34353 1.22263 1.02989 0.83640 0.93677 1.20581 0.76409 0.80620 0.91019 1.90699 1.53524 1.59046 1.42285 1.49297 1.67915 1.05891 1.12369 1.23612 1.03716 0.88357 0.91188 1.25100 0.90222 0.94975 0.94373 0.81158 1.23874 0.96272 0.96366 0.98525 1.24141 0.94982 0.91920 0.88629 0.86359 1.23448 0.96641 0.91200 0.97111 1.64520 1.02287 1.44843 1.11654 1.21960 0.89275 0.99755 0.96925 1.20931 0.83902 0.84266 0.88352 1.90491 1.81917 1.54833 1.23087 1.41916 1.08382 1.53206 1.17879 1.19574 0.90312 1.35936 1.00358 0.90644 1.25983 0.99735 0.97977 0.97481 1.69652 1.22788 1.46833 1.16808 0.85043 0.77123 0.78648 0.77865 1.19565 1.19331 1.20116 0.94280 0.91900 0.91571 0.92718 0.88267 0.89267 0.93323 0.92768 0.89249 0.86956 0.90253 0.86575 0.87061 0.88135 0.91005 0.95703 0.85913 0.91926 0.77048 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.81 71.98 0.71 -1.44 16 2 C -0.12 -1.78 5.64 30.60 0.17 -1.61 16 3 C 0.08 1.29 2.72 30.60 0.08 1.37 16 4 H 0.09 0.98 7.79 -2.38 -0.02 0.96 16 5 C -0.18 -2.88 9.53 71.98 0.69 -2.20 16 6 O -0.39 -9.52 9.06 -129.94 -1.18 -10.69 16 7 C 0.05 1.07 5.51 71.23 0.39 1.46 16 8 C 0.52 14.55 7.97 87.65 0.70 15.25 16 9 O -0.58 -21.97 16.84 16.02 0.27 -21.70 16 10 N -0.62 -14.21 2.95 -768.42 -2.26 -16.47 16 11 C 0.05 0.83 5.63 87.17 0.49 1.32 16 12 C 0.06 1.02 5.21 46.85 0.24 1.27 16 13 H 0.17 1.83 8.14 -2.39 -0.02 1.81 16 14 C -0.11 -1.83 6.80 33.46 0.23 -1.61 16 15 C 0.11 2.60 5.23 46.92 0.25 2.85 16 16 H 0.12 3.07 8.05 -2.38 -0.02 3.05 16 17 C 0.05 1.45 5.44 87.08 0.47 1.93 16 18 N -0.51 -14.94 4.84 -844.14 -4.09 -19.03 16 19 C 0.05 1.69 4.13 85.56 0.35 2.04 16 20 C 0.44 20.83 7.63 87.66 0.67 21.50 16 21 O -0.62 -34.68 15.47 -3.06 -0.05 -34.73 16 22 N -0.58 -29.55 5.29 -306.99 -1.62 -31.18 16 23 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 24 H 0.08 4.64 7.16 -2.92 -0.02 4.62 16 25 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 26 N -0.92 -49.52 13.05 21.67 0.28 -49.24 16 27 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 29 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 30 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 31 H 0.04 0.75 7.82 -2.39 -0.02 0.73 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 0.92 7.87 -2.38 -0.02 0.90 16 39 H 0.09 1.56 7.87 -2.39 -0.02 1.54 16 40 H 0.11 1.39 8.08 -2.39 -0.02 1.37 16 41 H 0.08 1.30 5.54 -2.38 -0.01 1.29 16 42 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 46 H 0.02 0.95 7.42 -2.39 -0.02 0.93 16 47 H 0.12 3.17 8.03 -2.38 -0.02 3.15 16 48 H 0.06 1.91 6.11 -2.39 -0.01 1.90 16 49 H 0.40 19.07 7.90 -92.70 -0.73 18.34 16 50 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -81.34 402.32 0.31 -81.03 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: 0.21 Total: 32.85 kcal Atomic # 6 Polarization: 17.01 SS G_CDS: 6.72 Total: 23.73 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -7.69 Total: -115.92 kcal Atomic # 8 Polarization: -66.16 SS G_CDS: -0.95 Total: -67.12 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -81.34 0.31 -81.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318192491.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.395 kcal (2) G-P(sol) polarization free energy of solvation -81.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds