Wall clock time and date at job start Sat Apr 11 2020 05:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47321 * 2 1 4 4 H 1.09006 * 109.46651 * 305.00037 * 3 2 1 5 5 C 1.52992 * 109.47272 * 185.00173 * 3 2 1 6 6 O 1.42889 * 109.47314 * 64.99701 * 3 2 1 7 7 C 1.42906 * 114.00311 * 210.00217 * 6 3 2 8 8 C 1.50703 * 109.47318 * 179.97438 * 7 6 3 9 9 O 1.21283 * 119.99893 * 0.02562 * 8 7 6 10 10 N 1.34768 * 119.99913 * 179.72134 * 8 7 6 11 11 C 1.47858 * 126.93044 * 0.30489 * 10 8 7 12 12 C 1.56016 * 105.11611 * 181.89368 * 11 10 8 13 13 H 1.09001 * 116.25841 * 158.85117 * 12 11 10 14 14 C 1.57082 * 99.59615 * 32.80686 * 12 11 10 15 15 C 1.49290 * 126.92460 * 179.97438 * 10 8 7 16 16 H 1.09000 * 116.12284 * 16.90482 * 15 10 8 17 17 C 1.56008 * 104.12904 * 246.93165 * 15 10 8 18 18 N 1.47813 * 105.10997 * 288.64955 * 17 15 10 19 19 C 1.46899 * 110.72709 * 122.75991 * 18 17 15 20 20 C 1.50695 * 109.47036 * 183.75639 * 19 18 17 21 21 O 1.21294 * 120.00247 * 0.02562 * 20 19 18 22 22 N 1.34776 * 119.99991 * 179.97438 * 20 19 18 23 23 C 1.37104 * 120.00030 * 180.02562 * 22 20 19 24 24 H 1.07997 * 119.99805 * 359.97438 * 23 22 20 25 25 C 1.38951 * 119.99703 * 180.02562 * 23 22 20 26 26 N 1.31418 * 119.99461 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 120.00334 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.47073 * 90.00029 * 27 25 23 29 29 H 1.48500 * 109.46949 * 210.00382 * 27 25 23 30 30 H 1.48501 * 109.46894 * 329.99925 * 27 25 23 31 31 H 1.09004 * 109.47143 * 300.00559 * 1 2 3 32 32 H 1.08998 * 109.47078 * 60.00312 * 1 2 3 33 33 H 1.09004 * 109.47430 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47195 * 240.00190 * 2 1 3 35 35 H 1.08998 * 109.47078 * 119.99688 * 2 1 3 36 36 H 1.09005 * 109.47446 * 59.99830 * 5 3 2 37 37 H 1.09004 * 109.47415 * 179.97438 * 5 3 2 38 38 H 1.08998 * 109.47571 * 300.00057 * 5 3 2 39 39 H 1.08995 * 109.46949 * 60.00318 * 7 6 3 40 40 H 1.09001 * 109.46720 * 300.00142 * 7 6 3 41 41 H 1.08995 * 110.31846 * 300.80930 * 11 10 8 42 42 H 1.09010 * 110.31389 * 62.88186 * 11 10 8 43 43 H 1.09003 * 112.35833 * 64.33956 * 14 12 11 44 44 H 1.08999 * 112.35453 * 191.74409 * 14 12 11 45 45 H 1.08996 * 110.32395 * 47.69486 * 17 15 10 46 46 H 1.08997 * 110.32429 * 169.90512 * 17 15 10 47 47 H 1.09004 * 109.46968 * 303.75886 * 19 18 17 48 48 H 1.08996 * 109.47329 * 63.75629 * 19 18 17 49 49 H 0.96999 * 120.00253 * 359.97438 * 22 20 19 50 50 H 0.96997 * 119.99401 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5647 1.4443 -0.1258 6 8 1.6620 2.0814 1.2209 7 6 1.4559 3.4904 1.1001 8 6 1.0626 4.0573 2.4399 9 8 0.9685 3.3267 3.4035 10 7 0.8215 5.3769 2.5687 11 6 0.8905 6.4007 1.5041 12 6 0.5677 7.7507 2.2164 13 1 0.9060 8.6554 1.7112 14 6 1.1941 7.4589 3.6270 15 6 0.4241 6.0987 3.8136 16 1 0.5929 5.5681 4.7507 17 6 -1.0327 6.5780 3.5274 18 7 -0.8936 7.6580 2.5278 19 6 -1.6709 7.3513 1.3196 20 6 -1.4364 8.4226 0.2860 21 8 -0.6943 9.3501 0.5315 22 7 -2.0504 8.3496 -0.9115 23 6 -1.8366 9.3239 -1.8520 24 1 -1.1765 10.1502 -1.6331 25 6 -2.4701 9.2489 -3.0865 26 7 -2.2655 10.1831 -3.9878 27 14 -3.6124 7.8201 -3.4648 28 1 -4.9960 8.1706 -3.0547 29 1 -3.5847 7.5368 -4.9223 30 1 -3.1644 6.6171 -2.7182 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.8531 0.9570 -1.0572 37 1 3.9281 2.4720 -0.1262 38 1 3.9995 0.9053 0.7160 39 1 0.6618 3.6808 0.3783 40 1 2.3769 3.9644 0.7608 41 1 1.8907 6.4305 1.0720 42 1 0.1510 6.1928 0.7307 43 1 2.2748 7.3241 3.5809 44 1 0.9064 8.2025 4.3702 45 1 -1.6279 5.7595 3.1228 46 1 -1.4896 6.9654 4.4380 47 1 -1.3571 6.3866 0.9208 48 1 -2.7312 7.3135 1.5695 49 1 -2.6430 7.6073 -1.1083 50 1 -2.7074 10.1305 -4.8496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318192492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:17 Heat of formation + Delta-G solvation = -65.431735 kcal Electronic energy + Delta-G solvation = -30917.251055 eV Core-core repulsion = 26753.337031 eV Total energy + Delta-G solvation = -4163.914024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.37955 -39.36026 -38.35283 -37.78517 -34.31850 -34.05181 -33.73811 -31.83546 -31.31493 -30.17516 -29.83474 -27.99591 -26.73846 -25.00496 -24.04895 -23.83452 -21.55318 -21.31906 -20.67308 -19.50435 -18.91141 -18.29198 -17.57333 -17.08660 -16.73582 -16.27384 -15.94121 -15.60586 -15.24108 -14.85955 -14.60621 -14.28923 -14.18451 -13.85508 -13.75798 -13.38355 -13.28643 -13.13543 -12.90123 -12.81970 -12.67421 -12.38120 -12.28827 -12.06186 -11.93762 -11.84164 -11.65154 -11.59483 -11.50148 -11.33793 -11.27369 -11.18376 -10.99847 -10.84636 -10.66885 -10.05424 -9.92532 -9.87700 -9.63887 -8.84109 -8.58260 -8.27424 -8.10654 -6.39208 -3.90949 2.41795 2.45656 2.94864 3.00769 3.09372 3.54537 3.61972 3.80911 4.02709 4.22655 4.37931 4.43144 4.48644 4.58838 4.66926 4.80733 4.81238 4.87021 4.90237 4.95117 5.04954 5.08977 5.17880 5.25325 5.30605 5.33289 5.35503 5.38750 5.54448 5.63488 5.66241 5.68105 5.68995 5.70741 5.78972 5.82989 5.83391 5.86773 5.91207 6.06332 6.08174 6.28024 6.84134 6.85559 6.99516 7.35021 7.49181 8.01154 8.05405 8.50557 8.86310 9.33428 9.72355 10.73619 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008744 B = 0.003593 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.506979 B = 7790.125863 C = 9997.380831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.081 3.919 4 H 0.063 0.937 5 C -0.176 4.176 6 O -0.355 6.355 7 C 0.048 3.952 8 C 0.534 3.466 9 O -0.524 6.524 10 N -0.621 5.621 11 C 0.052 3.948 12 C 0.073 3.927 13 H 0.158 0.842 14 C -0.138 4.138 15 C 0.112 3.888 16 H 0.126 0.874 17 C 0.026 3.974 18 N -0.491 5.491 19 C 0.026 3.974 20 C 0.452 3.548 21 O -0.562 6.562 22 N -0.588 5.588 23 C -0.306 4.306 24 H 0.121 0.879 25 C 0.043 3.957 26 N -0.879 5.879 27 Si 0.878 3.122 28 H -0.270 1.270 29 H -0.276 1.276 30 H -0.271 1.271 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.060 0.940 46 H 0.091 0.909 47 H 0.054 0.946 48 H 0.092 0.908 49 H 0.370 0.630 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.847 -16.442 9.114 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C 0.024 3.976 4 H 0.081 0.919 5 C -0.234 4.234 6 O -0.273 6.273 7 C -0.032 4.032 8 C 0.322 3.678 9 O -0.400 6.400 10 N -0.359 5.359 11 C -0.072 4.072 12 C -0.035 4.035 13 H 0.175 0.825 14 C -0.176 4.176 15 C 0.009 3.991 16 H 0.144 0.856 17 C -0.103 4.103 18 N -0.215 5.215 19 C -0.106 4.106 20 C 0.237 3.763 21 O -0.444 6.444 22 N -0.227 5.227 23 C -0.434 4.434 24 H 0.139 0.861 25 C -0.160 4.160 26 N -0.518 5.518 27 Si 0.704 3.296 28 H -0.195 1.195 29 H -0.201 1.201 30 H -0.196 1.196 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.116 0.884 45 H 0.079 0.921 46 H 0.109 0.891 47 H 0.071 0.929 48 H 0.110 0.890 49 H 0.203 0.797 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.031 -15.849 9.911 19.971 hybrid contribution -0.744 -1.721 -1.375 2.326 sum 6.286 -17.570 8.536 20.521 Atomic orbital electron populations 1.21749 0.95267 1.01707 1.02360 1.21614 0.96761 0.94528 1.02718 1.22257 0.94408 0.94244 0.86732 0.91910 1.22304 0.95969 1.02521 1.02564 1.88028 1.89426 1.17778 1.32114 1.22194 1.01561 0.84081 0.95378 1.19864 0.77206 0.80504 0.90231 1.90716 1.51363 1.57594 1.40303 1.49299 1.68840 1.05877 1.11865 1.23491 1.02670 0.89779 0.91264 1.24916 0.87573 0.96292 0.94677 0.82488 1.24079 0.99625 0.95922 0.98004 1.24152 0.94623 0.91570 0.88777 0.85587 1.23664 0.95799 0.93244 0.97602 1.64639 1.07369 1.40346 1.09128 1.22281 0.99649 0.97175 0.91472 1.19532 0.85268 0.88552 0.82918 1.90507 1.39594 1.35513 1.78775 1.42221 1.42682 1.24113 1.13701 1.19423 1.27656 1.03844 0.92507 0.86139 1.25036 0.97845 0.97419 0.95703 1.69619 1.42811 1.32984 1.06411 0.86707 0.81800 0.82098 0.78971 1.19510 1.20130 1.19631 0.91824 0.92965 0.92672 0.90641 0.90954 0.91443 0.92417 0.91615 0.90418 0.90383 0.90667 0.90050 0.89891 0.88430 0.92145 0.89060 0.92851 0.88979 0.79746 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.81 37.15 0.36 -1.00 16 2 C -0.12 -1.00 5.64 -26.73 -0.15 -1.15 16 3 C 0.08 0.77 2.72 -26.73 -0.07 0.69 16 4 H 0.06 0.54 7.79 -51.93 -0.40 0.14 16 5 C -0.18 -1.42 9.53 37.15 0.35 -1.07 16 6 O -0.36 -4.46 9.06 -55.14 -0.50 -4.96 16 7 C 0.05 0.55 5.51 36.01 0.20 0.75 16 8 C 0.53 7.46 7.97 -10.99 -0.09 7.38 16 9 O -0.52 -9.18 16.85 -14.35 -0.24 -9.42 16 10 N -0.62 -7.78 2.95 -156.59 -0.46 -8.24 16 11 C 0.05 0.64 5.61 -1.68 -0.01 0.64 16 12 C 0.07 1.01 4.15 -62.32 -0.26 0.75 16 13 H 0.16 2.56 6.42 -51.93 -0.33 2.23 16 14 C -0.14 -1.51 6.83 -22.11 -0.15 -1.66 16 15 C 0.11 1.29 5.24 -62.37 -0.33 0.96 16 16 H 0.13 1.40 8.06 -51.93 -0.42 0.98 16 17 C 0.03 0.31 6.26 -1.71 -0.01 0.30 16 18 N -0.49 -7.19 5.16 -218.60 -1.13 -8.32 16 19 C 0.03 0.40 4.63 -4.98 -0.02 0.38 16 20 C 0.45 9.39 7.44 -10.99 -0.08 9.31 16 21 O -0.56 -13.52 13.61 5.54 0.08 -13.45 16 22 N -0.59 -13.12 5.09 -10.96 -0.06 -13.17 16 23 C -0.31 -8.19 10.16 -14.93 -0.15 -8.34 16 24 H 0.12 3.69 7.39 -52.49 -0.39 3.31 16 25 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 26 N -0.88 -24.77 13.96 55.50 0.77 -24.00 16 27 Si 0.88 18.63 27.74 -169.99 -4.71 13.91 16 28 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 29 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 30 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 31 H 0.06 0.68 7.82 -51.93 -0.41 0.28 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.09 5.22 -51.92 -0.27 0.82 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.06 0.75 7.60 -51.93 -0.39 0.35 16 46 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.05 0.76 5.64 -51.93 -0.29 0.47 16 48 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.37 7.32 5.76 -40.82 -0.24 7.09 16 50 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -32.72 395.52 -8.99 -41.71 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -8.20 Total: 11.01 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -0.50 Total: 8.97 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.87 Total: -53.73 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.67 Total: -27.83 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -4.71 Total: 13.91 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.72 -8.99 -41.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318192492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.719 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds