Wall clock time and date at job start Sat Apr 11 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46634 * 2 1 4 4 H 1.08999 * 109.47500 * 54.68244 * 3 2 1 5 5 C 1.52999 * 109.47231 * 294.67821 * 3 2 1 6 6 N 1.46508 * 109.46841 * 185.00505 * 5 3 2 7 7 C 1.34780 * 119.99654 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99904 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99705 * 180.02562 * 7 6 5 10 10 H 1.08996 * 110.66801 * 61.75338 * 9 7 6 11 11 C 1.55009 * 110.74586 * 298.54122 * 9 7 6 12 12 C 1.55818 * 102.78570 * 241.67754 * 11 9 7 13 13 H 1.09000 * 115.38712 * 158.11050 * 12 11 9 14 14 C 1.55822 * 105.32796 * 287.31159 * 12 11 9 15 15 C 1.55001 * 102.78734 * 72.69018 * 14 12 11 16 16 C 1.55813 * 102.78897 * 0.02562 * 15 14 12 17 17 H 1.09003 * 115.94102 * 158.43193 * 16 15 14 18 18 O 1.46534 * 101.24641 * 32.42102 * 12 11 9 19 19 N 1.46903 * 109.46646 * 174.67924 * 3 2 1 20 20 C 1.46895 * 111.00248 * 272.62381 * 19 3 2 21 21 C 1.50697 * 109.47252 * 176.01876 * 20 19 3 22 22 O 1.21293 * 120.00311 * 0.02562 * 21 20 19 23 23 N 1.34778 * 120.00058 * 179.97438 * 21 20 19 24 24 C 1.37096 * 120.00288 * 179.72322 * 23 21 20 25 25 H 1.07997 * 120.00182 * 0.28063 * 24 23 21 26 26 C 1.38948 * 120.00207 * 180.27934 * 24 23 21 27 27 N 1.31415 * 120.00090 * 0.02562 * 26 24 23 28 28 Si 1.86806 * 120.00107 * 180.02562 * 26 24 23 29 29 H 1.48497 * 109.47007 * 89.99651 * 28 26 24 30 30 H 1.48491 * 109.47137 * 209.99867 * 28 26 24 31 31 H 1.48497 * 109.47003 * 330.00038 * 28 26 24 32 32 H 1.08993 * 109.47326 * 179.42392 * 1 2 3 33 33 H 1.09001 * 109.47068 * 299.42367 * 1 2 3 34 34 H 1.08999 * 109.47375 * 59.41799 * 1 2 3 35 35 H 1.08999 * 109.46845 * 240.00229 * 2 1 3 36 36 H 1.08995 * 109.47179 * 119.99911 * 2 1 3 37 37 H 1.09003 * 109.47151 * 305.00113 * 5 3 2 38 38 H 1.08997 * 109.46976 * 65.00672 * 5 3 2 39 39 H 0.97002 * 119.99762 * 359.97438 * 6 5 3 40 40 H 1.09001 * 110.74696 * 0.02562 * 11 9 7 41 41 H 1.09000 * 110.74791 * 123.16783 * 11 9 7 42 42 H 1.08999 * 110.74747 * 191.01818 * 14 12 11 43 43 H 1.08998 * 110.74964 * 314.36487 * 14 12 11 44 44 H 1.08993 * 110.74608 * 241.67449 * 15 14 12 45 45 H 1.09005 * 110.90471 * 118.39584 * 15 14 12 46 46 H 1.00899 * 111.00166 * 148.66633 * 19 3 2 47 47 H 1.09007 * 109.47141 * 56.01630 * 20 19 3 48 48 H 1.09002 * 109.47301 * 296.02239 * 20 19 3 49 49 H 0.97009 * 120.00208 * 0.02562 * 23 21 20 50 50 H 0.96997 * 120.00002 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6009 1.9832 0.8385 5 6 1.6421 2.1242 -1.3107 6 7 2.2312 3.4645 -1.3626 7 6 2.0139 4.2552 -2.4322 8 8 1.3310 3.8569 -3.3520 9 6 2.6204 5.6338 -2.4858 10 1 3.7086 5.5763 -2.4650 11 6 2.0945 6.5107 -1.3208 12 6 1.3683 7.6718 -2.0639 13 1 0.6168 8.2029 -1.4795 14 6 2.5055 8.5484 -2.6692 15 6 3.0313 7.6715 -3.8341 16 6 2.1278 6.4050 -3.7476 17 1 2.0511 5.8109 -4.6583 18 8 0.8731 6.9816 -3.2578 19 7 3.5033 1.4446 0.1284 20 6 3.9079 1.4249 1.5404 21 6 5.4091 1.3289 1.6316 22 8 6.0764 1.2820 0.6198 23 7 6.0103 1.2961 2.8374 24 6 7.3756 1.2031 2.9203 25 1 7.9697 1.1605 2.0195 26 6 7.9950 1.1635 4.1635 27 7 7.2721 1.2147 5.2598 28 14 9.8554 1.0374 4.2765 29 1 10.4431 2.4008 4.3036 30 1 10.2278 0.3130 5.5181 31 1 10.3739 0.2982 3.0976 32 1 -0.3633 -1.0275 -0.0103 33 1 -0.3633 0.5049 0.8951 34 1 -0.3634 0.5228 -0.8847 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 2.0062 1.5345 -2.1520 38 1 0.5562 2.2022 -1.3646 39 1 2.7771 3.7831 -0.6267 40 1 1.3941 5.9503 -0.7014 41 1 2.9208 6.8901 -0.7196 42 1 2.1079 9.4913 -3.0446 43 1 3.2903 8.7246 -1.9337 44 1 4.0782 7.4108 -3.6790 45 1 2.8981 8.1757 -4.7914 46 1 3.9075 2.2341 -0.3525 47 1 3.4581 0.5641 2.0354 48 1 3.5722 2.3404 2.0275 49 1 5.4767 1.3340 3.6466 50 1 7.7045 1.1875 6.1276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318578866.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:26 Heat of formation + Delta-G solvation = -137.059927 kcal Electronic energy + Delta-G solvation = -29966.095989 eV Core-core repulsion = 25799.075934 eV Total energy + Delta-G solvation = -4167.020056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.14775 -40.49867 -39.97942 -38.43042 -35.97717 -35.11517 -33.82142 -33.37013 -33.19344 -31.96331 -30.63430 -29.50181 -27.66109 -25.84998 -24.89239 -23.90813 -22.59127 -21.69496 -21.32079 -21.13888 -20.72994 -19.90417 -18.67264 -17.86213 -17.64892 -17.25466 -16.87902 -16.71248 -16.41448 -16.24828 -15.99948 -15.69666 -15.41144 -15.21433 -15.06851 -14.64191 -14.51553 -14.22175 -13.90905 -13.67545 -13.56549 -13.48401 -13.22339 -12.89287 -12.82861 -12.66589 -12.59645 -12.49647 -12.42858 -12.38502 -12.12169 -12.08801 -12.04564 -11.91331 -11.52695 -11.51157 -11.48357 -10.97272 -10.75809 -10.32943 -10.19008 -9.99851 -9.36701 -8.45673 -5.93944 1.38573 1.43071 1.55074 1.55375 2.04383 2.07563 2.29545 2.83499 2.87448 3.22042 3.37034 3.46607 3.52269 3.65212 3.70932 3.89192 3.94259 4.08852 4.10067 4.19608 4.23529 4.30421 4.37140 4.40303 4.44700 4.46405 4.57068 4.58344 4.60657 4.68636 4.79595 4.84805 4.95076 4.96153 5.00107 5.08651 5.13087 5.20589 5.21975 5.27312 5.31657 5.42316 5.48047 5.62272 5.87985 6.09053 6.34868 6.38119 6.61703 7.13156 7.14446 7.58282 8.13758 8.71576 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010170 B = 0.002582 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.417966 B =10839.764475 C =12857.195656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.086 3.914 4 H 0.070 0.930 5 C 0.122 3.878 6 N -0.723 5.723 7 C 0.523 3.477 8 O -0.577 6.577 9 C -0.142 4.142 10 H 0.131 0.869 11 C -0.136 4.136 12 C 0.053 3.947 13 H 0.146 0.854 14 C -0.143 4.143 15 C -0.145 4.145 16 C 0.079 3.921 17 H 0.119 0.881 18 O -0.401 6.401 19 N -0.679 5.679 20 C 0.064 3.936 21 C 0.439 3.561 22 O -0.622 6.622 23 N -0.573 5.573 24 C -0.332 4.332 25 H 0.078 0.922 26 C -0.011 4.011 27 N -0.920 5.920 28 Si 0.990 3.010 29 H -0.270 1.270 30 H -0.272 1.272 31 H -0.275 1.275 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.407 0.593 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.344 0.656 47 H 0.104 0.896 48 H 0.074 0.926 49 H 0.397 0.603 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.866 12.375 -8.633 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.024 4.024 4 H 0.088 0.912 5 C -0.002 4.002 6 N -0.376 5.376 7 C 0.310 3.690 8 O -0.456 6.456 9 C -0.163 4.163 10 H 0.149 0.851 11 C -0.173 4.173 12 C -0.004 4.004 13 H 0.163 0.837 14 C -0.180 4.180 15 C -0.183 4.183 16 C 0.021 3.979 17 H 0.137 0.863 18 O -0.321 6.321 19 N -0.314 5.314 20 C -0.068 4.068 21 C 0.226 3.774 22 O -0.509 6.509 23 N -0.210 5.210 24 C -0.462 4.462 25 H 0.096 0.904 26 C -0.211 4.211 27 N -0.561 5.561 28 Si 0.814 3.186 29 H -0.195 1.195 30 H -0.197 1.197 31 H -0.200 1.200 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.243 0.757 40 H 0.091 0.909 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.165 0.835 47 H 0.122 0.878 48 H 0.092 0.908 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.033 11.351 -9.916 20.594 hybrid contribution 0.926 0.524 1.115 1.541 sum -13.107 11.876 -8.801 19.756 Atomic orbital electron populations 1.21803 0.94122 1.02542 1.02249 1.21478 0.96176 0.94602 1.02618 1.21845 0.86814 0.97473 0.96232 0.91235 1.21568 0.98738 0.82117 0.97742 1.46013 1.53524 1.16219 1.21808 1.20861 0.79646 0.87233 0.81226 1.90679 1.40695 1.75940 1.38328 1.23191 1.02966 0.91086 0.99040 0.85145 1.23334 1.01621 0.96245 0.96146 1.24984 0.95694 0.92986 0.86692 0.83685 1.23261 0.98170 0.98621 0.97987 1.23261 0.99991 0.94860 1.00162 1.24554 0.83378 0.94056 0.95878 0.86301 1.90104 1.30223 1.69640 1.42095 1.59998 1.08555 1.51033 1.11827 1.21611 0.91084 1.03317 0.90773 1.20865 0.91058 0.82266 0.83207 1.90505 1.67383 1.56555 1.36435 1.41925 1.07083 1.64834 1.07154 1.19636 0.83299 1.49513 0.93710 0.90411 1.25987 1.04625 0.96392 0.94117 1.69664 1.37805 1.50361 0.98247 0.84971 0.77209 0.78664 0.77782 1.19488 1.19722 1.19957 0.91796 0.91847 0.92466 0.92226 0.91725 0.92272 0.90052 0.75676 0.90852 0.86907 0.90229 0.88475 0.88882 0.90236 0.83544 0.87830 0.90796 0.76952 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.69 71.98 0.70 -1.73 16 2 C -0.11 -2.30 5.66 30.60 0.17 -2.12 16 3 C 0.09 1.83 2.27 44.92 0.10 1.93 16 4 H 0.07 1.27 7.81 -2.39 -0.02 1.25 16 5 C 0.12 2.71 4.93 86.38 0.43 3.14 16 6 N -0.72 -15.23 4.88 -463.04 -2.26 -17.49 16 7 C 0.52 12.83 7.01 87.66 0.61 13.44 16 8 O -0.58 -18.99 15.88 -3.04 -0.05 -19.04 16 9 C -0.14 -2.53 2.89 -9.86 -0.03 -2.56 16 10 H 0.13 1.85 7.81 -2.39 -0.02 1.84 16 11 C -0.14 -1.85 6.10 32.26 0.20 -1.65 16 12 C 0.05 0.78 5.71 32.54 0.19 0.96 16 13 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 14 C -0.14 -1.58 6.52 32.25 0.21 -1.37 16 15 C -0.15 -1.93 6.52 32.25 0.21 -1.72 16 16 C 0.08 1.58 4.64 32.56 0.15 1.73 16 17 H 0.12 2.71 7.71 -2.39 -0.02 2.70 16 18 O -0.40 -9.39 11.64 -148.98 -1.73 -11.12 16 19 N -0.68 -19.50 5.86 -495.57 -2.90 -22.40 16 20 C 0.06 1.99 5.93 85.56 0.51 2.50 16 21 C 0.44 19.76 7.83 87.66 0.69 20.45 16 22 O -0.62 -33.27 15.87 -3.07 -0.05 -33.32 16 23 N -0.57 -28.11 5.29 -306.99 -1.62 -29.73 16 24 C -0.33 -18.32 9.68 84.04 0.81 -17.50 16 25 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 26 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 27 N -0.92 -48.28 13.05 21.66 0.28 -48.00 16 28 Si 0.99 41.91 29.55 68.60 2.03 43.94 16 29 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 30 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 31 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.92 6.66 -2.39 -0.02 0.90 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.43 7.48 -2.39 -0.02 1.41 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.74 6.81 -2.39 -0.02 1.73 16 39 H 0.41 7.21 7.41 -92.71 -0.69 6.52 16 40 H 0.07 1.08 7.73 -2.39 -0.02 1.06 16 41 H 0.11 1.00 7.81 -2.39 -0.02 0.98 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.10 0.74 7.81 -2.39 -0.02 0.72 16 44 H 0.09 0.98 7.81 -2.39 -0.02 0.96 16 45 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.34 10.12 6.57 -89.70 -0.59 9.53 16 47 H 0.10 2.94 7.46 -2.38 -0.02 2.92 16 48 H 0.07 1.87 8.13 -2.39 -0.02 1.85 16 49 H 0.40 18.40 7.90 -92.70 -0.73 17.67 16 50 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -73.88 399.63 -1.92 -75.81 By element: Atomic # 1 Polarization: 47.03 SS G_CDS: -1.03 Total: 46.00 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 5.41 Total: 15.36 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -6.50 Total: -117.62 kcal Atomic # 8 Polarization: -61.65 SS G_CDS: -1.83 Total: -63.48 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -73.88 -1.92 -75.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318578866.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.252 kcal (2) G-P(sol) polarization free energy of solvation -73.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds