Wall clock time and date at job start Sat Apr 11 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42892 * 109.47028 * 2 1 4 4 C 1.53003 * 109.47142 * 240.00028 * 2 1 3 5 5 C 1.50699 * 109.46926 * 59.99778 * 4 2 1 6 6 O 1.21278 * 120.00513 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99663 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00111 * 180.02562 * 7 5 4 9 9 C 1.52992 * 109.47304 * 180.02562 * 8 7 5 10 10 H 1.09005 * 112.79163 * 75.80829 * 9 8 7 11 11 C 1.53515 * 113.47547 * 206.61754 * 9 8 7 12 12 C 1.53515 * 83.57623 * 140.79154 * 11 9 8 13 13 N 1.47480 * 113.47694 * 304.99859 * 9 8 7 14 14 C 1.46898 * 111.00405 * 106.53094 * 13 9 8 15 15 C 1.50700 * 109.47325 * 187.49822 * 14 13 9 16 16 O 1.21292 * 119.99927 * 0.02562 * 15 14 13 17 17 N 1.34769 * 119.99972 * 179.97438 * 15 14 13 18 18 C 1.37105 * 120.00178 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99575 * 359.97438 * 18 17 15 20 20 C 1.38944 * 119.99933 * 180.02562 * 18 17 15 21 21 N 1.31421 * 119.99925 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00517 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47442 * 90.00032 * 22 20 18 24 24 H 1.48499 * 109.47354 * 210.00415 * 22 20 18 25 25 H 1.48507 * 109.46932 * 330.00161 * 22 20 18 26 26 C 1.53002 * 109.46861 * 120.00129 * 2 1 3 27 27 C 1.52996 * 117.50013 * 13.74742 * 26 2 1 28 28 C 1.52999 * 117.49806 * 305.08411 * 26 2 1 29 29 H 1.08996 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47064 * 300.00079 * 1 2 3 31 31 H 1.09001 * 109.46899 * 60.00265 * 1 2 3 32 32 H 0.96700 * 113.99749 * 180.02562 * 3 2 1 33 33 H 1.09009 * 109.46913 * 300.00037 * 4 2 1 34 34 H 1.09000 * 109.47249 * 180.02562 * 4 2 1 35 35 H 0.97005 * 120.00357 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.47044 * 59.99446 * 8 7 5 37 37 H 1.09000 * 109.46789 * 300.00092 * 8 7 5 38 38 H 1.08994 * 114.17159 * 27.14259 * 11 9 8 39 39 H 1.09004 * 114.34450 * 254.44427 * 11 9 8 40 40 H 1.09005 * 113.47774 * 219.21143 * 12 11 9 41 41 H 1.08997 * 113.53532 * 88.75298 * 12 11 9 42 42 H 1.09002 * 109.46877 * 307.49737 * 14 13 9 43 43 H 1.08994 * 109.47113 * 67.49979 * 14 13 9 44 44 H 0.97001 * 120.00327 * 0.02562 * 17 15 14 45 45 H 0.96996 * 119.99733 * 179.97438 * 21 20 18 46 46 H 1.09000 * 115.54650 * 159.41794 * 26 2 1 47 47 H 1.08994 * 117.50103 * 359.97438 * 27 26 2 48 48 H 1.08995 * 117.49995 * 145.02145 * 27 26 2 49 49 H 1.09002 * 117.49817 * 214.97833 * 28 26 2 50 50 H 1.09000 * 117.49854 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 8 0.8408 0.9755 -2.3685 7 7 1.8637 -0.4710 -3.7038 8 6 1.3758 0.2198 -4.9000 9 6 1.8857 -0.5014 -6.1492 10 1 1.3468 -1.4270 -6.3519 11 6 2.0117 0.4138 -7.3752 12 6 3.2926 -0.3929 -7.6307 13 7 3.3520 -0.6564 -6.1807 14 6 3.7403 -2.0478 -5.9141 15 6 5.2381 -2.1330 -5.7719 16 8 5.9155 -1.1329 -5.8814 17 7 5.8248 -3.3203 -5.5220 18 6 7.1875 -3.3977 -5.3920 19 1 7.7908 -2.5073 -5.4904 20 6 7.7924 -4.6219 -5.1349 21 7 9.0985 -4.6960 -5.0099 22 14 6.7491 -6.1621 -4.9656 23 1 6.5901 -6.8012 -6.2966 24 1 7.4144 -7.1110 -4.0371 25 1 5.4132 -5.7984 -4.4284 26 6 2.0400 -0.7213 1.2493 27 6 1.0326 -1.5533 2.0453 28 6 1.5400 -0.2226 2.6065 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.9703 1.4235 -0.0004 33 1 1.6767 -1.7490 -1.2492 34 1 3.1301 -0.7217 -1.2491 35 1 2.4214 -1.2597 -3.7928 36 1 1.7391 1.2475 -4.8996 37 1 0.2858 0.2198 -4.9003 38 1 2.1854 1.4623 -7.1334 39 1 1.2354 0.2681 -8.1264 40 1 4.1218 0.2130 -7.9962 41 1 3.1303 -1.2895 -8.2287 42 1 3.2679 -2.3865 -4.9919 43 1 3.4174 -2.6800 -6.7412 44 1 5.2831 -4.1201 -5.4340 45 1 9.5207 -5.5506 -4.8301 46 1 3.0647 -1.0889 1.1945 47 1 0.0065 -1.5865 1.6793 48 1 1.3946 -2.4681 2.5146 49 1 2.2356 -0.2625 3.4448 50 1 0.8474 0.6191 2.6094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323213965.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:33 Heat of formation + Delta-G solvation = -46.743549 kcal Electronic energy + Delta-G solvation = -30275.329206 eV Core-core repulsion = 26112.225563 eV Total energy + Delta-G solvation = -4163.103643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.68789 -40.07100 -38.49611 -37.98059 -35.57823 -34.47843 -34.00325 -31.90200 -31.77042 -30.94220 -29.11605 -27.35607 -26.02673 -24.33964 -23.64871 -22.92906 -22.58285 -20.54296 -19.84001 -19.68083 -19.45371 -18.43385 -17.54816 -16.56893 -16.52425 -16.27488 -15.85644 -15.64450 -15.30526 -15.15198 -14.89726 -14.65167 -14.27204 -14.11359 -13.77279 -13.38358 -13.24872 -13.18522 -12.91937 -12.68912 -12.55764 -12.30616 -12.17442 -11.92584 -11.69333 -11.66454 -11.47949 -11.36015 -11.24489 -11.02534 -10.99455 -10.73304 -10.66330 -10.62216 -10.40268 -10.11317 -10.03068 -9.62432 -9.52077 -9.01639 -8.93649 -8.40936 -8.23534 -6.36192 -3.88013 2.70139 2.95028 3.00393 3.07613 3.09560 3.47523 3.65179 3.81895 4.04244 4.24176 4.31327 4.36070 4.48356 4.60550 4.70901 4.72565 4.75390 4.84695 4.89697 5.03989 5.09979 5.11069 5.21050 5.27498 5.30508 5.33149 5.40869 5.43016 5.55275 5.57561 5.63672 5.66561 5.73988 5.79067 5.80856 5.83064 5.90188 5.91777 6.00162 6.08549 6.24482 6.33887 6.55176 7.00874 7.51061 7.52306 7.65897 8.08494 8.29275 8.54553 8.90116 9.36514 9.77663 10.76973 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008345 B = 0.003297 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3354.576579 B = 8489.940242 C =11022.455323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.184 3.816 3 O -0.539 6.539 4 C -0.171 4.171 5 C 0.515 3.485 6 O -0.524 6.524 7 N -0.725 5.725 8 C 0.142 3.858 9 C 0.004 3.996 10 H 0.082 0.918 11 C -0.133 4.133 12 C 0.004 3.996 13 N -0.432 5.432 14 C 0.004 3.996 15 C 0.454 3.546 16 O -0.553 6.553 17 N -0.593 5.593 18 C -0.305 4.305 19 H 0.119 0.881 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.270 1.270 26 C -0.190 4.190 27 C -0.178 4.178 28 C -0.164 4.164 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.371 0.629 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.399 0.601 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.369 0.631 45 H 0.274 0.726 46 H 0.106 0.894 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.146 3.270 6.133 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.142 3.858 3 O -0.343 6.343 4 C -0.211 4.211 5 C 0.301 3.699 6 O -0.400 6.400 7 N -0.378 5.378 8 C 0.018 3.982 9 C -0.106 4.106 10 H 0.099 0.901 11 C -0.171 4.171 12 C -0.124 4.124 13 N -0.155 5.155 14 C -0.128 4.128 15 C 0.239 3.761 16 O -0.434 6.434 17 N -0.233 5.233 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.196 1.196 26 C -0.209 4.209 27 C -0.215 4.215 28 C -0.201 4.201 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.217 0.783 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.234 0.766 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.201 0.799 45 H 0.084 0.916 46 H 0.125 0.875 47 H 0.120 0.880 48 H 0.112 0.888 49 H 0.111 0.889 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.177 5.047 6.630 21.829 hybrid contribution 0.053 -2.864 -0.339 2.884 sum -20.124 2.183 6.291 21.197 Atomic orbital electron populations 1.22100 0.92587 1.01766 1.04647 1.20226 0.94897 0.81641 0.89019 1.86675 1.26042 1.24914 1.96710 1.22445 1.03349 1.01474 0.93867 1.20391 0.80451 0.84720 0.84324 1.90662 1.37445 1.25577 1.86339 1.46000 1.53880 1.32387 1.05556 1.21267 0.98029 0.96726 0.82157 1.23787 0.91863 0.99315 0.95651 0.90057 1.23156 0.97903 0.99797 0.96279 1.23759 0.98580 0.99734 0.90371 1.68873 1.10102 1.20944 1.15580 1.22605 0.97251 0.91423 1.01521 1.19502 0.88153 0.84189 0.84295 1.90585 1.64386 1.34996 1.53392 1.42223 1.08123 1.07578 1.65364 1.19420 0.80175 0.97610 1.46148 0.86300 1.25033 0.95683 0.97766 0.97650 1.69622 1.08304 1.26234 1.47910 0.86684 0.80080 0.83706 0.78934 1.19663 1.20148 1.19599 1.23082 0.99677 1.04714 0.93412 1.23127 0.99499 0.95169 1.03727 1.22870 1.03693 0.97832 0.95744 0.91816 0.92285 0.88953 0.78261 0.88198 0.88362 0.76608 0.90790 0.91432 0.88478 0.90397 0.88995 0.91375 0.90096 0.92001 0.79860 0.91586 0.87545 0.88005 0.88840 0.88901 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 7.18 37.16 0.27 -1.39 16 2 C 0.18 1.94 0.80 -90.61 -0.07 1.86 16 3 O -0.54 -6.71 11.85 -53.49 -0.63 -7.34 16 4 C -0.17 -1.76 4.95 -27.88 -0.14 -1.90 16 5 C 0.51 6.65 7.39 -10.99 -0.08 6.57 16 6 O -0.52 -8.33 12.96 -12.70 -0.16 -8.50 16 7 N -0.73 -8.69 5.46 -60.30 -0.33 -9.02 16 8 C 0.14 1.63 5.81 -4.04 -0.02 1.61 16 9 C 0.00 0.04 3.25 -71.43 -0.23 -0.19 16 10 H 0.08 0.73 7.91 -51.93 -0.41 0.32 16 11 C -0.13 -1.29 8.00 -26.20 -0.21 -1.50 16 12 C 0.00 0.06 7.69 -7.53 -0.06 0.00 16 13 N -0.43 -6.26 5.39 -237.92 -1.28 -7.55 16 14 C 0.00 0.07 5.04 -4.98 -0.03 0.04 16 15 C 0.45 9.84 7.83 -10.99 -0.09 9.75 16 16 O -0.55 -14.59 16.01 5.55 0.09 -14.50 16 17 N -0.59 -13.50 5.09 -10.96 -0.06 -13.55 16 18 C -0.30 -8.40 10.16 -14.93 -0.15 -8.55 16 19 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 20 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 21 N -0.88 -25.25 13.96 55.50 0.77 -24.48 16 22 Si 0.88 18.70 27.74 -169.99 -4.71 13.98 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.27 -5.15 6.52 56.52 0.37 -4.78 16 26 C -0.19 -1.71 5.32 -90.62 -0.48 -2.19 16 27 C -0.18 -1.41 9.66 -26.69 -0.26 -1.67 16 28 C -0.16 -1.39 9.86 -26.69 -0.26 -1.66 16 29 H 0.06 0.56 6.74 -51.93 -0.35 0.21 16 30 H 0.06 0.62 6.96 -51.93 -0.36 0.26 16 31 H 0.09 1.22 5.51 -51.93 -0.29 0.94 16 32 H 0.37 3.57 9.05 45.56 0.41 3.98 16 33 H 0.10 0.85 8.14 -51.92 -0.42 0.42 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.40 4.57 6.20 -40.82 -0.25 4.32 16 36 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.96 7.94 -51.93 -0.41 0.55 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.07 0.77 7.44 -51.93 -0.39 0.39 16 42 H 0.08 1.02 6.25 -51.93 -0.32 0.70 16 43 H 0.06 0.80 7.35 -51.93 -0.38 0.42 16 44 H 0.37 7.29 5.76 -40.82 -0.24 7.05 16 45 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.10 0.76 5.89 -51.93 -0.31 0.46 16 48 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.10 0.89 7.28 -51.93 -0.38 0.51 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -35.18 396.60 -9.27 -44.45 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -7.02 Total: 18.72 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -1.91 Total: 1.81 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.89 Total: -54.60 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.71 Total: -30.34 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.71 Total: 13.98 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.18 -9.27 -44.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323213965.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.289 kcal (2) G-P(sol) polarization free energy of solvation -35.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds