Wall clock time and date at job start Sat Apr 11 2020 05:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42892 * 109.47028 * 2 1 4 4 C 1.53003 * 109.47142 * 240.00028 * 2 1 3 5 5 C 1.50699 * 109.46926 * 59.99778 * 4 2 1 6 6 O 1.21278 * 120.00513 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99663 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00111 * 180.02562 * 7 5 4 9 9 C 1.52992 * 109.47304 * 180.02562 * 8 7 5 10 10 H 1.09005 * 112.79163 * 75.80829 * 9 8 7 11 11 C 1.53515 * 113.47547 * 206.61754 * 9 8 7 12 12 C 1.53515 * 83.57623 * 140.79154 * 11 9 8 13 13 N 1.47480 * 113.47694 * 304.99859 * 9 8 7 14 14 C 1.46898 * 111.00405 * 106.53094 * 13 9 8 15 15 C 1.50700 * 109.47325 * 187.49822 * 14 13 9 16 16 O 1.21292 * 119.99927 * 0.02562 * 15 14 13 17 17 N 1.34769 * 119.99972 * 179.97438 * 15 14 13 18 18 C 1.37105 * 120.00178 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99575 * 359.97438 * 18 17 15 20 20 C 1.38944 * 119.99933 * 180.02562 * 18 17 15 21 21 N 1.31421 * 119.99925 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00517 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47442 * 90.00032 * 22 20 18 24 24 H 1.48499 * 109.47354 * 210.00415 * 22 20 18 25 25 H 1.48507 * 109.46932 * 330.00161 * 22 20 18 26 26 C 1.53002 * 109.46861 * 120.00129 * 2 1 3 27 27 C 1.52996 * 117.50013 * 13.74742 * 26 2 1 28 28 C 1.52999 * 117.49806 * 305.08411 * 26 2 1 29 29 H 1.08996 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47064 * 300.00079 * 1 2 3 31 31 H 1.09001 * 109.46899 * 60.00265 * 1 2 3 32 32 H 0.96700 * 113.99749 * 180.02562 * 3 2 1 33 33 H 1.09009 * 109.46913 * 300.00037 * 4 2 1 34 34 H 1.09000 * 109.47249 * 180.02562 * 4 2 1 35 35 H 0.97005 * 120.00357 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.47044 * 59.99446 * 8 7 5 37 37 H 1.09000 * 109.46789 * 300.00092 * 8 7 5 38 38 H 1.08994 * 114.17159 * 27.14259 * 11 9 8 39 39 H 1.09004 * 114.34450 * 254.44427 * 11 9 8 40 40 H 1.09005 * 113.47774 * 219.21143 * 12 11 9 41 41 H 1.08997 * 113.53532 * 88.75298 * 12 11 9 42 42 H 1.09002 * 109.46877 * 307.49737 * 14 13 9 43 43 H 1.08994 * 109.47113 * 67.49979 * 14 13 9 44 44 H 0.97001 * 120.00327 * 0.02562 * 17 15 14 45 45 H 0.96996 * 119.99733 * 179.97438 * 21 20 18 46 46 H 1.09000 * 115.54650 * 159.41794 * 26 2 1 47 47 H 1.08994 * 117.50103 * 359.97438 * 27 26 2 48 48 H 1.08995 * 117.49995 * 145.02145 * 27 26 2 49 49 H 1.09002 * 117.49817 * 214.97833 * 28 26 2 50 50 H 1.09000 * 117.49854 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 8 0.8408 0.9755 -2.3685 7 7 1.8637 -0.4710 -3.7038 8 6 1.3758 0.2198 -4.9000 9 6 1.8857 -0.5014 -6.1492 10 1 1.3468 -1.4270 -6.3519 11 6 2.0117 0.4138 -7.3752 12 6 3.2926 -0.3929 -7.6307 13 7 3.3520 -0.6564 -6.1807 14 6 3.7403 -2.0478 -5.9141 15 6 5.2381 -2.1330 -5.7719 16 8 5.9155 -1.1329 -5.8814 17 7 5.8248 -3.3203 -5.5220 18 6 7.1875 -3.3977 -5.3920 19 1 7.7908 -2.5073 -5.4904 20 6 7.7924 -4.6219 -5.1349 21 7 9.0985 -4.6960 -5.0099 22 14 6.7491 -6.1621 -4.9656 23 1 6.5901 -6.8012 -6.2966 24 1 7.4144 -7.1110 -4.0371 25 1 5.4132 -5.7984 -4.4284 26 6 2.0400 -0.7213 1.2493 27 6 1.0326 -1.5533 2.0453 28 6 1.5400 -0.2226 2.6065 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.9703 1.4235 -0.0004 33 1 1.6767 -1.7490 -1.2492 34 1 3.1301 -0.7217 -1.2491 35 1 2.4214 -1.2597 -3.7928 36 1 1.7391 1.2475 -4.8996 37 1 0.2858 0.2198 -4.9003 38 1 2.1854 1.4623 -7.1334 39 1 1.2354 0.2681 -8.1264 40 1 4.1218 0.2130 -7.9962 41 1 3.1303 -1.2895 -8.2287 42 1 3.2679 -2.3865 -4.9919 43 1 3.4174 -2.6800 -6.7412 44 1 5.2831 -4.1201 -5.4340 45 1 9.5207 -5.5506 -4.8301 46 1 3.0647 -1.0889 1.1945 47 1 0.0065 -1.5865 1.6793 48 1 1.3946 -2.4681 2.5146 49 1 2.2356 -0.2625 3.4448 50 1 0.8474 0.6191 2.6094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323213965.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:32 Heat of formation + Delta-G solvation = -76.509784 kcal Electronic energy + Delta-G solvation = -30276.619967 eV Core-core repulsion = 26112.225563 eV Total energy + Delta-G solvation = -4164.394404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68454 -41.00856 -39.78230 -39.27148 -36.37377 -35.98371 -35.45029 -33.76338 -32.75867 -32.12710 -30.01741 -28.22358 -27.62172 -25.18695 -25.12647 -23.79269 -23.22429 -21.52116 -21.25972 -20.66135 -20.52384 -20.27661 -18.41564 -17.74446 -17.44073 -17.40072 -17.06141 -16.75086 -16.47622 -16.32363 -16.22576 -15.56385 -15.38345 -15.22632 -14.94556 -14.84524 -14.45189 -14.19758 -14.15488 -13.98802 -13.91935 -13.32659 -13.19258 -12.96635 -12.77227 -12.63792 -12.53923 -12.42493 -12.32598 -12.05321 -12.02470 -11.92483 -11.80650 -11.58824 -11.48440 -11.42615 -11.09622 -10.95054 -10.49144 -10.42319 -10.23606 -9.96931 -9.71640 -8.40044 -6.01366 1.30100 1.36700 1.45680 1.73150 1.97002 2.18865 2.24151 2.65376 2.80993 3.15329 3.22777 3.49098 3.54239 3.60281 3.67998 3.80579 3.96582 3.99201 4.09047 4.12729 4.17224 4.24895 4.28550 4.32993 4.38016 4.40330 4.42534 4.59114 4.67110 4.76762 4.83257 4.84520 4.91275 4.95962 5.01206 5.02555 5.03502 5.21842 5.25397 5.28699 5.32961 5.43714 5.54764 5.63191 5.93552 6.08112 6.57726 6.61127 6.88594 6.90266 7.34285 7.41430 8.00208 8.77833 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008345 B = 0.003297 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3354.576579 B = 8489.940242 C =11022.455323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.180 3.820 3 O -0.564 6.564 4 C -0.167 4.167 5 C 0.510 3.490 6 O -0.559 6.559 7 N -0.722 5.722 8 C 0.142 3.858 9 C 0.019 3.981 10 H 0.115 0.885 11 C -0.117 4.117 12 C -0.004 4.004 13 N -0.473 5.473 14 C 0.017 3.983 15 C 0.453 3.547 16 O -0.610 6.610 17 N -0.591 5.591 18 C -0.327 4.327 19 H 0.051 0.949 20 C -0.016 4.016 21 N -0.937 5.937 22 Si 0.965 3.035 23 H -0.259 1.259 24 H -0.277 1.277 25 H -0.225 1.225 26 C -0.194 4.194 27 C -0.167 4.167 28 C -0.171 4.171 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.379 0.621 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.403 0.597 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.390 0.610 45 H 0.278 0.722 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.106 0.894 49 H 0.100 0.900 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.779 0.182 6.262 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.139 3.861 3 O -0.370 6.370 4 C -0.207 4.207 5 C 0.297 3.703 6 O -0.438 6.438 7 N -0.374 5.374 8 C 0.018 3.982 9 C -0.090 4.090 10 H 0.133 0.867 11 C -0.155 4.155 12 C -0.133 4.133 13 N -0.196 5.196 14 C -0.115 4.115 15 C 0.240 3.760 16 O -0.493 6.493 17 N -0.234 5.234 18 C -0.457 4.457 19 H 0.069 0.931 20 C -0.214 4.214 21 N -0.578 5.578 22 Si 0.785 3.215 23 H -0.183 1.183 24 H -0.203 1.203 25 H -0.148 1.148 26 C -0.213 4.213 27 C -0.204 4.204 28 C -0.207 4.207 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.226 0.774 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.239 0.761 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.130 0.870 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.132 0.868 43 H 0.115 0.885 44 H 0.225 0.775 45 H 0.088 0.912 46 H 0.129 0.871 47 H 0.125 0.875 48 H 0.124 0.876 49 H 0.119 0.881 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.833 1.959 6.746 24.847 hybrid contribution 1.266 -1.723 -0.411 2.177 sum -22.567 0.236 6.335 23.441 Atomic orbital electron populations 1.22069 0.92900 1.02664 1.03147 1.20324 0.94717 0.81053 0.89963 1.86645 1.26936 1.26561 1.96859 1.22470 1.03490 1.02354 0.92381 1.20861 0.79854 0.84357 0.85213 1.90658 1.39114 1.27168 1.86855 1.46012 1.53528 1.32314 1.05540 1.21291 0.98727 0.95641 0.82565 1.23828 0.89421 1.00597 0.95182 0.86739 1.23097 0.97037 0.98820 0.96565 1.23849 0.98977 1.00745 0.89714 1.68816 1.13187 1.20717 1.16910 1.22548 0.91415 0.92943 1.04557 1.20861 0.91121 0.82747 0.81240 1.90566 1.66735 1.36997 1.55036 1.42024 1.06313 1.09043 1.65997 1.18967 0.82345 0.96054 1.48292 0.93072 1.26137 0.97197 1.02003 0.96105 1.69819 1.11145 1.27785 1.49011 0.85365 0.79612 0.76972 0.79550 1.18315 1.20260 1.14828 1.22996 1.00225 1.05304 0.92761 1.23209 0.99412 0.95142 1.02622 1.22894 1.03868 0.98150 0.95836 0.89695 0.92579 0.91554 0.77367 0.85708 0.87963 0.76122 0.93306 0.90082 0.89475 0.87016 0.92209 0.89413 0.86816 0.88490 0.77473 0.91214 0.87054 0.87528 0.87583 0.88120 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 7.18 71.98 0.52 -2.58 16 2 C 0.18 3.62 0.80 -10.79 -0.01 3.61 16 3 O -0.56 -14.16 11.85 -131.52 -1.56 -15.72 16 4 C -0.17 -3.13 4.95 29.85 0.15 -2.98 16 5 C 0.51 12.56 7.39 87.66 0.65 13.21 16 6 O -0.56 -17.76 12.96 14.44 0.19 -17.57 16 7 N -0.72 -15.76 5.46 -463.08 -2.53 -18.29 16 8 C 0.14 2.96 5.81 86.38 0.50 3.46 16 9 C 0.02 0.34 3.25 42.19 0.14 0.47 16 10 H 0.11 1.36 7.91 -2.38 -0.02 1.34 16 11 C -0.12 -1.94 8.00 30.94 0.25 -1.70 16 12 C 0.00 -0.10 7.69 83.58 0.64 0.55 16 13 N -0.47 -12.74 5.39 -906.64 -4.89 -17.63 16 14 C 0.02 0.46 5.04 85.56 0.43 0.89 16 15 C 0.45 19.42 7.83 87.66 0.69 20.11 16 16 O -0.61 -33.51 16.01 -3.07 -0.05 -33.56 16 17 N -0.59 -26.41 5.09 -306.99 -1.56 -27.97 16 18 C -0.33 -18.69 10.16 84.04 0.85 -17.84 16 19 H 0.05 3.54 7.39 -2.91 -0.02 3.52 16 20 C -0.02 -0.87 5.50 84.92 0.47 -0.40 16 21 N -0.94 -55.65 13.96 21.66 0.30 -55.35 16 22 Si 0.97 36.90 27.74 68.60 1.90 38.80 16 23 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 24 H -0.28 -10.65 7.11 99.48 0.71 -9.95 16 25 H -0.23 -6.92 6.52 99.48 0.65 -6.27 16 26 C -0.19 -3.15 5.32 -10.79 -0.06 -3.20 16 27 C -0.17 -2.22 9.66 30.62 0.30 -1.93 16 28 C -0.17 -2.67 9.86 30.62 0.30 -2.36 16 29 H 0.08 1.31 6.74 -2.39 -0.02 1.30 16 30 H 0.06 1.15 6.96 -2.39 -0.02 1.13 16 31 H 0.07 1.75 5.51 -2.39 -0.01 1.74 16 32 H 0.38 7.48 9.05 -74.06 -0.67 6.81 16 33 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.40 7.97 6.20 -92.70 -0.57 7.40 16 36 H 0.05 1.27 7.88 -2.39 -0.02 1.25 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.63 7.94 -2.39 -0.02 1.61 16 39 H 0.11 1.15 8.14 -2.38 -0.02 1.14 16 40 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.09 1.70 7.44 -2.39 -0.02 1.68 16 42 H 0.11 2.31 6.25 -2.39 -0.01 2.30 16 43 H 0.10 1.99 7.35 -2.39 -0.02 1.97 16 44 H 0.39 13.98 5.76 -92.71 -0.53 13.45 16 45 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.11 1.31 5.89 -2.39 -0.01 1.30 16 48 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.09 1.55 7.28 -2.39 -0.02 1.53 16 Total: -1.00 -84.97 396.60 -3.23 -88.20 By element: Atomic # 1 Polarization: 50.65 SS G_CDS: -0.85 Total: 49.80 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 5.81 Total: 9.29 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -8.68 Total: -119.24 kcal Atomic # 8 Polarization: -65.43 SS G_CDS: -1.42 Total: -66.85 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 1.90 Total: 38.80 kcal Total: -84.97 -3.23 -88.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323213965.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.695 kcal (2) G-P(sol) polarization free energy of solvation -84.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds