Wall clock time and date at job start Sat Apr 11 2020 05:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47232 * 2 1 4 4 N 1.46907 * 109.47138 * 179.97438 * 3 2 1 5 5 C 1.46894 * 110.99937 * 169.99983 * 4 3 2 6 6 C 1.50700 * 109.47448 * 293.95720 * 5 4 3 7 7 O 1.21285 * 119.99926 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00400 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99526 * 359.97438 * 8 6 5 10 10 C 1.52998 * 109.47528 * 270.00078 * 9 8 6 11 11 C 1.46491 * 120.00021 * 179.97438 * 8 6 5 12 12 C 1.50702 * 109.46957 * 269.99631 * 11 8 6 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.46902 * 110.99967 * 293.95477 * 4 3 2 21 21 H 1.08998 * 110.54023 * 52.15192 * 20 4 3 22 22 C 1.54227 * 110.60468 * 174.99851 * 20 4 3 23 23 C 1.51318 * 103.55275 * 118.51660 * 22 20 4 24 24 O 1.21225 * 125.39638 * 179.97438 * 23 22 20 25 25 N 1.33879 * 109.20764 * 0.02562 * 23 22 20 26 26 C 1.46500 * 122.75913 * 179.97438 * 25 23 22 27 27 C 1.33872 * 114.47288 * 359.97438 * 25 23 22 28 28 O 1.21228 * 125.39382 * 180.02562 * 27 25 23 29 29 H 1.09000 * 109.47557 * 300.00369 * 1 2 3 30 30 H 1.09003 * 109.46604 * 59.99743 * 1 2 3 31 31 H 1.09000 * 109.47411 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47148 * 239.99963 * 2 1 3 33 33 H 1.09002 * 109.46883 * 119.99790 * 2 1 3 34 34 H 1.08998 * 109.47084 * 59.99923 * 3 2 1 35 35 H 1.08996 * 109.47075 * 300.00148 * 3 2 1 36 36 H 1.08995 * 109.47206 * 173.95179 * 5 4 3 37 37 H 1.09008 * 109.47243 * 53.95707 * 5 4 3 38 38 H 1.09005 * 109.47610 * 30.00505 * 9 8 6 39 39 H 1.09006 * 109.46979 * 150.00041 * 9 8 6 40 40 H 1.08997 * 109.47157 * 180.02562 * 10 9 8 41 41 H 1.08997 * 109.47006 * 300.00139 * 10 9 8 42 42 H 1.08999 * 109.46982 * 60.00674 * 10 9 8 43 43 H 1.09004 * 109.47166 * 149.99897 * 11 8 6 44 44 H 1.08994 * 109.47507 * 29.99603 * 11 8 6 45 45 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 46 46 H 1.09001 * 110.60546 * 237.03509 * 22 20 4 47 47 H 1.09005 * 110.60859 * 0.02562 * 22 20 4 48 48 H 1.08993 * 109.47333 * 359.97438 * 26 25 23 49 49 H 1.09005 * 109.46543 * 119.97619 * 26 25 23 50 50 H 1.09000 * 109.47072 * 239.97659 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0356 2.7930 -0.2375 6 6 3.6776 3.2329 -1.6337 7 8 3.0464 2.4938 -2.3592 8 7 4.0598 4.4471 -2.0766 9 6 4.8227 5.3395 -1.2005 10 6 3.8575 6.2177 -0.4017 11 6 3.7123 4.8744 -3.4341 12 6 4.8055 4.4620 -4.3858 13 1 5.6723 3.9340 -4.0165 14 6 4.6963 4.7532 -5.7291 15 7 3.6406 5.3958 -6.1789 16 14 6.0478 4.2353 -6.9100 17 1 5.7533 2.8776 -7.4346 18 1 6.1148 5.1981 -8.0385 19 1 7.3496 4.2183 -6.1958 20 6 4.0350 0.8859 1.2542 21 1 3.5872 -0.0867 1.4583 22 6 5.5721 0.7743 1.1959 23 6 6.0360 1.6767 2.3185 24 8 7.1913 1.8795 2.6246 25 7 4.9683 2.2147 2.9210 26 6 5.0783 3.1383 4.0528 27 6 3.7919 1.8391 2.4039 28 8 2.7043 2.2050 2.7948 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 5.1198 2.7852 -0.1257 37 1 3.6010 3.4849 0.4840 38 1 5.4266 4.7460 -0.5141 39 1 5.4742 5.9716 -1.8040 40 1 4.4252 6.8820 0.2499 41 1 3.2537 6.8113 -1.0880 42 1 3.2061 5.5857 0.2020 43 1 3.6009 5.9585 -3.4565 44 1 2.7744 4.4065 -3.7334 45 1 3.5639 5.6010 -7.1239 46 1 5.8892 -0.2533 1.3737 47 1 5.9466 1.1323 0.2368 48 1 6.1297 3.2929 4.2948 49 1 4.6221 4.0924 3.7887 50 1 4.5648 2.7168 4.9169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282468401.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:36 Heat of formation + Delta-G solvation = -82.736023 kcal Electronic energy + Delta-G solvation = -31878.003199 eV Core-core repulsion = 27713.338805 eV Total energy + Delta-G solvation = -4164.664394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.43906 -39.52663 -38.87897 -37.22244 -36.09966 -35.26631 -33.72894 -32.85059 -31.87780 -30.14946 -28.64883 -27.37513 -26.62037 -26.17788 -24.10082 -23.07506 -22.72894 -21.83227 -21.17906 -19.64423 -18.57537 -17.63088 -17.52302 -16.73911 -16.47765 -16.24308 -15.88229 -15.59858 -15.13982 -14.96456 -14.83052 -14.48092 -14.39556 -14.09144 -14.00191 -13.49025 -13.43857 -13.07258 -12.96590 -12.93571 -12.90918 -12.66566 -12.24829 -12.04379 -11.92915 -11.83687 -11.58905 -11.36039 -11.24035 -11.14008 -10.95003 -10.88444 -10.73231 -10.55881 -10.46869 -10.43884 -10.13176 -10.10190 -9.63521 -8.98389 -8.43812 -8.40568 -7.69225 -6.04934 -4.09539 1.14789 2.19688 2.34217 3.27158 3.31607 3.35646 3.37930 3.41081 3.72061 3.91215 3.96520 4.16502 4.44944 4.64174 4.81186 4.84936 4.95546 5.05605 5.09738 5.10334 5.13694 5.19407 5.28799 5.29115 5.29932 5.33268 5.42418 5.47207 5.56978 5.66449 5.70905 5.80332 5.90633 5.95941 6.13686 6.17499 6.27416 6.32939 6.41475 6.43935 6.68467 6.81836 6.97028 7.05672 7.41671 7.42925 7.51662 7.91327 8.22224 8.36693 8.88724 9.05595 9.55694 11.03157 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.003720 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.361822 B = 7524.437798 C = 8422.768704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.036 3.964 4 N -0.482 5.482 5 C 0.021 3.979 6 C 0.511 3.489 7 O -0.518 6.518 8 N -0.596 5.596 9 C 0.106 3.894 10 C -0.169 4.169 11 C 0.248 3.752 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.050 3.950 21 H 0.141 0.859 22 C -0.157 4.157 23 C 0.527 3.473 24 O -0.480 6.480 25 N -0.577 5.577 26 C 0.065 3.935 27 C 0.494 3.506 28 O -0.472 6.472 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.032 0.968 44 H 0.043 0.957 45 H 0.263 0.737 46 H 0.129 0.871 47 H 0.134 0.866 48 H 0.093 0.907 49 H 0.076 0.924 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.631 -6.941 20.303 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.090 4.090 4 N -0.206 5.206 5 C -0.110 4.110 6 C 0.296 3.704 7 O -0.394 6.394 8 N -0.329 5.329 9 C -0.018 4.018 10 C -0.227 4.227 11 C 0.130 3.870 12 C -0.564 4.564 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.063 4.063 21 H 0.158 0.842 22 C -0.197 4.197 23 C 0.316 3.684 24 O -0.352 6.352 25 N -0.322 5.322 26 C -0.076 4.076 27 C 0.281 3.719 28 O -0.341 6.341 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.147 0.853 47 H 0.152 0.848 48 H 0.112 0.888 49 H 0.095 0.905 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.383 -7.202 19.725 21.002 hybrid contribution 0.597 0.527 0.139 0.808 sum 0.980 -6.674 19.865 20.979 Atomic orbital electron populations 1.21703 0.95589 1.01467 1.02007 1.21450 0.95626 0.96043 1.02022 1.22600 0.84461 0.98588 1.03392 1.62117 1.10313 1.21313 1.26847 1.22297 1.01473 0.89726 0.97527 1.19808 0.80921 0.82164 0.87536 1.90666 1.39598 1.52084 1.57007 1.48254 1.53677 1.14641 1.16344 1.21408 0.93946 0.93244 0.93214 1.22222 1.00233 1.00084 1.00207 1.19269 0.97281 0.95256 0.75239 1.21423 1.05372 1.37221 0.92422 0.92446 1.24925 0.95955 0.95041 0.98101 1.69933 1.28133 1.40437 1.14890 0.86506 0.81987 0.78494 0.80478 1.20516 1.21207 1.19928 1.22857 0.96257 0.99849 0.87304 0.84186 1.22719 0.94397 1.02583 0.99964 1.20934 0.84424 0.79825 0.83194 1.90783 1.17839 1.60376 1.66166 1.46814 1.09639 1.43429 1.32309 1.21943 1.04630 0.93224 0.87843 1.22296 0.83275 0.82107 0.84263 1.90752 1.25026 1.56100 1.62240 0.92994 0.92293 0.92731 0.90653 0.92847 0.93127 0.87785 0.88481 0.92395 0.92300 0.89645 0.92155 0.91778 0.93402 0.95038 0.93850 0.92734 0.85270 0.84786 0.88816 0.90508 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.11 -1.32 5.88 -26.73 -0.16 -1.47 16 3 C 0.04 0.50 4.48 -3.82 -0.02 0.48 16 4 N -0.48 -6.38 4.22 -228.33 -0.96 -7.34 16 5 C 0.02 0.30 3.16 -4.98 -0.02 0.28 16 6 C 0.51 10.11 7.30 -10.98 -0.08 10.03 16 7 O -0.52 -12.24 13.97 5.55 0.08 -12.16 16 8 N -0.60 -12.17 2.46 -175.06 -0.43 -12.60 16 9 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 10 C -0.17 -2.28 10.24 37.16 0.38 -1.89 16 11 C 0.25 6.33 5.16 -5.20 -0.03 6.31 16 12 C -0.53 -14.62 9.39 -34.44 -0.32 -14.95 16 13 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 16 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.05 0.49 3.02 -67.92 -0.21 0.28 16 21 H 0.14 1.09 6.24 -51.93 -0.32 0.77 16 22 C -0.16 -1.30 6.06 -26.94 -0.16 -1.47 16 23 C 0.53 5.32 8.01 -11.08 -0.09 5.23 16 24 O -0.48 -6.13 17.23 5.60 0.10 -6.04 16 25 N -0.58 -5.61 2.95 -122.73 -0.36 -5.97 16 26 C 0.06 0.51 10.65 59.85 0.64 1.15 16 27 C 0.49 5.37 5.92 -11.09 -0.07 5.31 16 28 O -0.47 -6.33 15.75 5.60 0.09 -6.24 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.52 6.42 -51.93 -0.33 0.19 16 34 H 0.05 0.72 5.98 -51.93 -0.31 0.41 16 35 H 0.10 1.79 5.79 -51.93 -0.30 1.49 16 36 H 0.10 1.26 5.40 -51.93 -0.28 0.98 16 37 H 0.06 0.81 6.43 -51.92 -0.33 0.48 16 38 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 39 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 43 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 44 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.13 1.23 6.63 -51.93 -0.34 0.89 16 48 H 0.09 0.69 7.41 -51.93 -0.38 0.30 16 49 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 398.21 15.07 6.00 6.00 Total: -1.00 -34.31 398.21 -7.55 -41.86 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.89 Total: 0.07 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 0.12 Total: 11.33 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -1.02 Total: -51.49 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.26 Total: -24.44 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.31 -7.55 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282468401.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.879 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds