Wall clock time and date at job start Sat Apr 11 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47232 * 2 1 4 4 N 1.46907 * 109.47138 * 179.97438 * 3 2 1 5 5 C 1.46894 * 110.99937 * 169.99983 * 4 3 2 6 6 C 1.50700 * 109.47448 * 293.95720 * 5 4 3 7 7 O 1.21285 * 119.99926 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00400 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99526 * 359.97438 * 8 6 5 10 10 C 1.52998 * 109.47528 * 270.00078 * 9 8 6 11 11 C 1.46491 * 120.00021 * 179.97438 * 8 6 5 12 12 C 1.50702 * 109.46957 * 269.99631 * 11 8 6 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.46902 * 110.99967 * 293.95477 * 4 3 2 21 21 H 1.08998 * 110.54023 * 52.15192 * 20 4 3 22 22 C 1.54227 * 110.60468 * 174.99851 * 20 4 3 23 23 C 1.51318 * 103.55275 * 118.51660 * 22 20 4 24 24 O 1.21225 * 125.39638 * 179.97438 * 23 22 20 25 25 N 1.33879 * 109.20764 * 0.02562 * 23 22 20 26 26 C 1.46500 * 122.75913 * 179.97438 * 25 23 22 27 27 C 1.33872 * 114.47288 * 359.97438 * 25 23 22 28 28 O 1.21228 * 125.39382 * 180.02562 * 27 25 23 29 29 H 1.09000 * 109.47557 * 300.00369 * 1 2 3 30 30 H 1.09003 * 109.46604 * 59.99743 * 1 2 3 31 31 H 1.09000 * 109.47411 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47148 * 239.99963 * 2 1 3 33 33 H 1.09002 * 109.46883 * 119.99790 * 2 1 3 34 34 H 1.08998 * 109.47084 * 59.99923 * 3 2 1 35 35 H 1.08996 * 109.47075 * 300.00148 * 3 2 1 36 36 H 1.08995 * 109.47206 * 173.95179 * 5 4 3 37 37 H 1.09008 * 109.47243 * 53.95707 * 5 4 3 38 38 H 1.09005 * 109.47610 * 30.00505 * 9 8 6 39 39 H 1.09006 * 109.46979 * 150.00041 * 9 8 6 40 40 H 1.08997 * 109.47157 * 180.02562 * 10 9 8 41 41 H 1.08997 * 109.47006 * 300.00139 * 10 9 8 42 42 H 1.08999 * 109.46982 * 60.00674 * 10 9 8 43 43 H 1.09004 * 109.47166 * 149.99897 * 11 8 6 44 44 H 1.08994 * 109.47507 * 29.99603 * 11 8 6 45 45 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 46 46 H 1.09001 * 110.60546 * 237.03509 * 22 20 4 47 47 H 1.09005 * 110.60859 * 0.02562 * 22 20 4 48 48 H 1.08993 * 109.47333 * 359.97438 * 26 25 23 49 49 H 1.09005 * 109.46543 * 119.97619 * 26 25 23 50 50 H 1.09000 * 109.47072 * 239.97659 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0356 2.7930 -0.2375 6 6 3.6776 3.2329 -1.6337 7 8 3.0464 2.4938 -2.3592 8 7 4.0598 4.4471 -2.0766 9 6 4.8227 5.3395 -1.2005 10 6 3.8575 6.2177 -0.4017 11 6 3.7123 4.8744 -3.4341 12 6 4.8055 4.4620 -4.3858 13 1 5.6723 3.9340 -4.0165 14 6 4.6963 4.7532 -5.7291 15 7 3.6406 5.3958 -6.1789 16 14 6.0478 4.2353 -6.9100 17 1 5.7533 2.8776 -7.4346 18 1 6.1148 5.1981 -8.0385 19 1 7.3496 4.2183 -6.1958 20 6 4.0350 0.8859 1.2542 21 1 3.5872 -0.0867 1.4583 22 6 5.5721 0.7743 1.1959 23 6 6.0360 1.6767 2.3185 24 8 7.1913 1.8795 2.6246 25 7 4.9683 2.2147 2.9210 26 6 5.0783 3.1383 4.0528 27 6 3.7919 1.8391 2.4039 28 8 2.7043 2.2050 2.7948 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 5.1198 2.7852 -0.1257 37 1 3.6010 3.4849 0.4840 38 1 5.4266 4.7460 -0.5141 39 1 5.4742 5.9716 -1.8040 40 1 4.4252 6.8820 0.2499 41 1 3.2537 6.8113 -1.0880 42 1 3.2061 5.5857 0.2020 43 1 3.6009 5.9585 -3.4565 44 1 2.7744 4.4065 -3.7334 45 1 3.5639 5.6010 -7.1239 46 1 5.8892 -0.2533 1.3737 47 1 5.9466 1.1323 0.2368 48 1 6.1297 3.2929 4.2948 49 1 4.6221 4.0924 3.7887 50 1 4.5648 2.7168 4.9169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282468401.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:35 Heat of formation + Delta-G solvation = -106.729321 kcal Electronic energy + Delta-G solvation = -31879.043627 eV Core-core repulsion = 27713.338805 eV Total energy + Delta-G solvation = -4165.704822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.27848 -40.91468 -39.87707 -38.33759 -37.02211 -36.81482 -34.94086 -34.57804 -32.84258 -31.65929 -30.04264 -28.28987 -28.05906 -27.05585 -25.42129 -24.58372 -23.99582 -22.91014 -22.11631 -20.56231 -19.94700 -18.81973 -18.49398 -18.35582 -17.72260 -17.42304 -17.18826 -16.77898 -16.39727 -16.29995 -15.93587 -15.76062 -15.40102 -15.33545 -14.91608 -14.76847 -14.53411 -14.37998 -14.15261 -13.88242 -13.84579 -13.59235 -13.49727 -13.44051 -13.29568 -13.10155 -12.76986 -12.70351 -12.65809 -12.53445 -12.40807 -12.19258 -12.07489 -11.94784 -11.78030 -11.69377 -11.44356 -11.29395 -10.89460 -10.62975 -10.54667 -9.53945 -9.38759 -8.20656 -6.34997 0.31548 1.38549 1.41451 1.44861 1.50758 1.54590 1.78546 2.09405 2.40276 2.67416 2.97649 3.09481 3.19932 3.30225 3.54111 3.87724 3.91828 3.96256 4.11374 4.20260 4.24263 4.25222 4.34208 4.37230 4.39234 4.45700 4.52461 4.58123 4.67222 4.72048 4.79053 4.82219 4.88076 4.91926 4.94907 5.02811 5.19305 5.20401 5.29839 5.34931 5.37565 5.58594 5.62079 5.70129 5.81191 5.85903 6.07837 6.15683 6.63287 6.71071 6.78270 7.30114 7.48124 8.86500 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.003720 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.361822 B = 7524.437798 C = 8422.768704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C 0.043 3.957 4 N -0.493 5.493 5 C 0.039 3.961 6 C 0.502 3.498 7 O -0.565 6.565 8 N -0.604 5.604 9 C 0.101 3.899 10 C -0.160 4.160 11 C 0.266 3.734 12 C -0.539 4.539 13 H 0.055 0.945 14 C 0.009 3.991 15 N -0.929 5.929 16 Si 0.966 3.034 17 H -0.280 1.280 18 H -0.277 1.277 19 H -0.261 1.261 20 C 0.052 3.948 21 H 0.167 0.833 22 C -0.148 4.148 23 C 0.532 3.468 24 O -0.507 6.507 25 N -0.576 5.576 26 C 0.059 3.941 27 C 0.498 3.502 28 O -0.498 6.498 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.049 0.951 43 H 0.020 0.980 44 H -0.002 1.002 45 H 0.266 0.734 46 H 0.165 0.835 47 H 0.130 0.870 48 H 0.098 0.902 49 H 0.080 0.920 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 -8.175 22.249 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.084 4.084 4 N -0.216 5.216 5 C -0.092 4.092 6 C 0.289 3.711 7 O -0.444 6.444 8 N -0.336 5.336 9 C -0.022 4.022 10 C -0.218 4.218 11 C 0.144 3.856 12 C -0.578 4.578 13 H 0.073 0.927 14 C -0.190 4.190 15 N -0.569 5.569 16 Si 0.790 3.210 17 H -0.206 1.206 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.059 4.059 21 H 0.184 0.816 22 C -0.188 4.188 23 C 0.323 3.677 24 O -0.380 6.380 25 N -0.319 5.319 26 C -0.081 4.081 27 C 0.285 3.715 28 O -0.369 6.369 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.137 0.863 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.038 0.962 44 H 0.016 0.984 45 H 0.075 0.925 46 H 0.183 0.817 47 H 0.148 0.852 48 H 0.117 0.883 49 H 0.098 0.902 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.336 -8.418 21.722 23.413 hybrid contribution -0.045 0.931 -0.409 1.018 sum 2.291 -7.486 21.314 22.706 Atomic orbital electron populations 1.21698 0.95161 1.02467 1.01292 1.21426 0.96012 0.94457 1.02695 1.22434 0.85093 0.99721 1.01152 1.62058 1.09883 1.20377 1.29311 1.22100 1.02720 0.90835 0.93528 1.20730 0.79709 0.81257 0.89364 1.90642 1.41452 1.53382 1.58905 1.48258 1.54278 1.15914 1.15168 1.21693 0.94236 0.93238 0.93016 1.22143 0.99878 0.99934 0.99888 1.18680 0.94889 0.93878 0.78113 1.21698 1.05639 1.37145 0.93298 0.92685 1.25834 0.98332 0.94908 0.99947 1.70056 1.30025 1.41412 1.15424 0.85438 0.79348 0.77918 0.78253 1.20592 1.20225 1.18532 1.23024 0.97403 1.00325 0.85159 0.81599 1.22786 0.92765 1.04258 0.98957 1.21139 0.83924 0.79457 0.83205 1.90784 1.18851 1.61310 1.67042 1.46845 1.09233 1.43318 1.32536 1.22100 1.05196 0.93156 0.87671 1.22355 0.83055 0.81787 0.84278 1.90751 1.26023 1.57017 1.63139 0.92568 0.94179 0.90840 0.91849 0.90071 0.93331 0.91933 0.86258 0.91485 0.89094 0.90428 0.88662 0.93799 0.93179 0.96220 0.98430 0.92492 0.81735 0.85189 0.88309 0.90168 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.91 71.98 0.71 -2.39 16 2 C -0.11 -2.39 5.88 30.59 0.18 -2.21 16 3 C 0.04 1.19 4.48 86.30 0.39 1.58 16 4 N -0.49 -12.36 4.22 -876.31 -3.70 -16.06 16 5 C 0.04 1.08 3.16 85.56 0.27 1.35 16 6 C 0.50 20.30 7.30 87.66 0.64 20.94 16 7 O -0.56 -28.07 13.97 -3.05 -0.04 -28.12 16 8 N -0.60 -25.27 2.46 -826.16 -2.03 -27.30 16 9 C 0.10 3.09 5.93 86.38 0.51 3.60 16 10 C -0.16 -4.12 10.24 71.98 0.74 -3.39 16 11 C 0.27 14.25 5.16 85.64 0.44 14.69 16 12 C -0.54 -30.79 9.39 25.60 0.24 -30.55 16 13 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 14 C 0.01 0.50 5.46 84.66 0.46 0.96 16 15 N -0.93 -56.21 13.29 21.45 0.28 -55.92 16 16 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 20 C 0.05 0.87 3.02 44.78 0.14 1.00 16 21 H 0.17 1.91 6.24 -2.39 -0.01 1.90 16 22 C -0.15 -1.93 6.06 30.46 0.18 -1.75 16 23 C 0.53 9.10 8.01 87.99 0.70 9.81 16 24 O -0.51 -11.61 17.23 -2.86 -0.05 -11.66 16 25 N -0.58 -9.56 2.95 -780.03 -2.30 -11.87 16 26 C 0.06 0.79 10.65 127.77 1.36 2.15 16 27 C 0.50 9.52 5.92 87.99 0.52 10.04 16 28 O -0.50 -12.36 15.75 -2.87 -0.05 -12.40 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.34 6.42 -2.39 -0.02 1.32 16 34 H 0.05 1.36 5.98 -2.39 -0.01 1.34 16 35 H 0.06 2.28 5.79 -2.39 -0.01 2.27 16 36 H 0.12 2.78 5.40 -2.39 -0.01 2.77 16 37 H 0.07 1.77 6.43 -2.38 -0.02 1.75 16 38 H 0.09 2.20 6.44 -2.38 -0.02 2.18 16 39 H 0.08 2.50 8.07 -2.38 -0.02 2.48 16 40 H 0.09 1.80 8.14 -2.39 -0.02 1.79 16 41 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.05 1.26 7.22 -2.39 -0.02 1.25 16 43 H 0.02 1.09 8.07 -2.38 -0.02 1.07 16 44 H 0.00 -0.15 7.42 -2.39 -0.02 -0.17 16 45 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 46 H 0.17 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.13 1.95 6.63 -2.38 -0.02 1.93 16 48 H 0.10 1.23 7.41 -2.39 -0.02 1.21 16 49 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 50 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -78.35 398.21 2.58 -75.77 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.94 Total: 14.97 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: 7.49 Total: 25.82 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -7.75 Total: -111.14 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -0.14 Total: -52.18 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -78.35 2.58 -75.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282468401.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.961 kcal (2) G-P(sol) polarization free energy of solvation -78.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds