Wall clock time and date at job start Sat Apr 11 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47523 * 2 1 4 4 N 1.46892 * 109.47530 * 179.97438 * 3 2 1 5 5 C 1.46898 * 111.00326 * 287.82153 * 4 3 2 6 6 C 1.52999 * 109.46763 * 294.65720 * 5 4 3 7 7 C 1.50704 * 109.47003 * 181.86258 * 6 5 4 8 8 O 1.21275 * 120.00140 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99698 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00314 * 359.97438 * 9 7 6 11 11 C 1.46500 * 119.99622 * 180.02562 * 9 7 6 12 12 C 1.50700 * 109.47383 * 89.99862 * 11 9 7 13 13 H 1.08003 * 120.00135 * 359.97438 * 12 11 9 14 14 C 1.37874 * 120.00352 * 179.97438 * 12 11 9 15 15 N 1.31509 * 120.00428 * 179.97438 * 14 12 11 16 16 Si 1.86809 * 119.99639 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.46842 * 90.00229 * 16 14 12 18 18 H 1.48503 * 109.46981 * 209.99850 * 16 14 12 19 19 H 1.48497 * 109.47115 * 329.99920 * 16 14 12 20 20 C 1.46906 * 111.00085 * 163.86336 * 4 3 2 21 21 H 1.08998 * 110.65871 * 62.47619 * 20 4 3 22 22 C 1.54225 * 110.60894 * 299.54450 * 20 4 3 23 23 C 1.51312 * 103.55852 * 241.48170 * 22 20 4 24 24 O 1.21223 * 125.40074 * 179.97438 * 23 22 20 25 25 N 1.33875 * 109.20496 * 0.02562 * 23 22 20 26 26 C 1.46504 * 122.76331 * 180.02562 * 25 23 22 27 27 C 1.33880 * 114.47853 * 359.97438 * 25 23 22 28 28 O 1.21222 * 125.39922 * 179.73770 * 27 25 23 29 29 H 1.09000 * 109.47274 * 300.00208 * 1 2 3 30 30 H 1.08995 * 109.46785 * 60.00138 * 1 2 3 31 31 H 1.08997 * 109.47037 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47274 * 239.99792 * 2 1 3 33 33 H 1.09004 * 109.47388 * 119.99953 * 2 1 3 34 34 H 1.09000 * 109.47320 * 59.91976 * 3 2 1 35 35 H 1.09009 * 109.46965 * 299.92448 * 3 2 1 36 36 H 1.08995 * 109.47192 * 54.65481 * 5 4 3 37 37 H 1.09001 * 109.47332 * 174.66180 * 5 4 3 38 38 H 1.08999 * 109.47495 * 301.86347 * 6 5 4 39 39 H 1.09004 * 109.47448 * 61.86412 * 6 5 4 40 40 H 1.09004 * 109.46780 * 90.00716 * 10 9 7 41 41 H 1.09001 * 109.47335 * 209.99700 * 10 9 7 42 42 H 1.08994 * 109.47512 * 330.00977 * 10 9 7 43 43 H 1.08999 * 109.46888 * 209.99677 * 11 9 7 44 44 H 1.08995 * 109.47220 * 329.99451 * 11 9 7 45 45 H 0.97005 * 120.00291 * 180.02562 * 15 14 12 46 46 H 1.09006 * 110.60844 * 122.96098 * 22 20 4 47 47 H 1.09002 * 110.73884 * 0.06271 * 22 20 4 48 48 H 1.09003 * 109.46459 * 269.99171 * 26 25 23 49 49 H 1.08995 * 109.47113 * 29.98742 * 26 25 23 50 50 H 1.08993 * 109.47481 * 149.99578 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0349 1.0229 1.3065 6 6 3.6554 2.0594 2.3659 7 6 4.2338 1.6524 3.6967 8 8 4.8850 0.6335 3.7888 9 7 4.0266 2.4204 4.7847 10 6 3.2395 3.6510 4.6737 11 6 4.5893 2.0250 6.0783 12 6 5.9650 2.6209 6.2309 13 1 6.3791 3.2326 5.4429 14 6 6.6953 2.3853 7.3764 15 7 7.8960 2.9048 7.5094 16 14 5.9789 1.3278 8.7396 17 1 6.3478 -0.0923 8.5102 18 1 6.5197 1.7745 10.0486 19 1 4.4999 1.4607 8.7437 20 6 4.0356 2.7598 -0.3805 21 1 3.7331 3.5184 0.3413 22 6 3.5662 3.1424 -1.7989 23 6 4.8576 3.2735 -2.5766 24 8 4.9441 3.5654 -3.7500 25 7 5.8894 3.0148 -1.7638 26 6 7.2831 3.0580 -2.2133 27 6 5.5429 2.7144 -0.5059 28 8 6.3142 2.4436 0.3892 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6756 1.9567 0.8892 35 1 1.6778 1.9559 -0.8907 36 1 3.6101 0.0559 1.5757 37 1 5.1204 0.9403 1.2515 38 1 4.0523 3.0335 2.0799 39 1 2.5698 2.1182 2.4443 40 1 2.1883 3.4276 4.8562 41 1 3.5903 4.3743 5.4098 42 1 3.3541 4.0665 3.6726 43 1 3.9457 2.3867 6.8802 44 1 4.6564 0.9383 6.1284 45 1 8.4099 2.7387 8.3151 46 1 3.0302 4.0914 -1.7827 47 1 2.9408 2.3571 -2.2235 48 1 7.5781 2.0737 -2.5771 49 1 7.3831 3.7874 -3.0171 50 1 7.9248 3.3449 -1.3804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282614411.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:38 Heat of formation + Delta-G solvation = -80.642713 kcal Electronic energy + Delta-G solvation = -31065.182501 eV Core-core repulsion = 26900.608880 eV Total energy + Delta-G solvation = -4164.573622 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.25151 -39.54920 -38.79221 -37.95969 -36.03626 -34.93111 -33.96549 -32.81095 -32.41232 -30.16195 -28.33359 -27.22730 -26.88482 -25.99088 -25.20521 -23.50630 -22.24129 -22.13259 -20.29090 -19.65936 -18.51004 -17.71588 -17.47362 -16.94752 -16.64561 -16.57491 -15.99779 -15.41499 -15.34691 -15.12792 -14.86907 -14.51962 -14.38519 -14.33794 -14.05957 -13.81066 -13.30860 -13.22834 -12.91235 -12.81917 -12.71643 -12.53951 -12.41341 -12.26405 -12.09773 -12.03039 -11.95179 -11.82957 -11.45166 -11.33508 -11.12866 -10.91106 -10.77603 -10.55208 -10.51624 -10.15411 -10.13793 -9.96665 -9.52569 -9.03811 -8.69335 -8.57199 -7.69816 -6.06592 -4.05357 1.24290 2.21990 2.42568 3.29846 3.34718 3.35849 3.37486 3.43054 3.66510 3.86536 3.94623 4.10368 4.40883 4.60099 4.62878 4.79047 4.90485 4.97085 5.02958 5.06025 5.08458 5.09323 5.14009 5.18466 5.21270 5.25621 5.28177 5.32169 5.42877 5.49012 5.51512 5.67433 5.77456 5.80832 5.87451 5.91713 6.04677 6.12027 6.34075 6.50909 6.59442 6.69974 6.71365 6.95420 7.06083 7.34050 7.53950 7.62706 8.25006 8.49090 8.95040 9.00771 9.53442 11.06900 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012095 B = 0.003219 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.483740 B = 8695.665596 C =10307.063002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.043 3.957 4 N -0.517 5.517 5 C 0.057 3.943 6 C -0.173 4.173 7 C 0.513 3.487 8 O -0.537 6.537 9 N -0.600 5.600 10 C 0.085 3.915 11 C 0.216 3.784 12 C -0.528 4.528 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.266 1.266 20 C 0.041 3.959 21 H 0.101 0.899 22 C -0.154 4.154 23 C 0.534 3.466 24 O -0.488 6.488 25 N -0.574 5.574 26 C 0.067 3.933 27 C 0.532 3.468 28 O -0.450 6.450 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.029 0.971 44 H 0.036 0.964 45 H 0.264 0.736 46 H 0.122 0.878 47 H 0.131 0.869 48 H 0.073 0.927 49 H 0.086 0.914 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.270 1.430 -20.141 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.084 4.084 4 N -0.241 5.241 5 C -0.070 4.070 6 C -0.215 4.215 7 C 0.299 3.701 8 O -0.414 6.414 9 N -0.332 5.332 10 C -0.059 4.059 11 C 0.095 3.905 12 C -0.567 4.567 13 H 0.092 0.908 14 C -0.130 4.130 15 N -0.536 5.536 16 Si 0.704 3.296 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.071 4.071 21 H 0.118 0.882 22 C -0.193 4.193 23 C 0.324 3.676 24 O -0.360 6.360 25 N -0.318 5.318 26 C -0.074 4.074 27 C 0.318 3.682 28 O -0.317 6.317 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.140 0.860 47 H 0.149 0.851 48 H 0.092 0.908 49 H 0.105 0.895 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.077 0.572 -20.439 24.825 hybrid contribution -0.356 0.319 1.457 1.534 sum -14.433 0.891 -18.982 23.863 Atomic orbital electron populations 1.21731 0.95499 1.01930 1.01701 1.21512 0.95277 0.95844 1.03257 1.22375 0.86063 0.98338 1.01603 1.62454 1.08462 1.22541 1.30654 1.22288 1.03417 0.97753 0.83551 1.22272 1.01747 1.01879 0.95575 1.20089 0.80806 0.84177 0.85002 1.90675 1.39776 1.25760 1.85167 1.47847 1.51965 1.22983 1.10431 1.21624 0.94390 0.87797 1.02062 1.19648 0.94548 0.96802 0.79472 1.21337 0.99047 1.32133 1.04171 0.90797 1.24865 0.94636 0.95413 0.98135 1.69900 1.10823 1.44849 1.28014 0.86846 0.79739 0.81468 0.81585 1.19881 1.21082 1.19113 1.22425 0.92202 0.94736 0.97696 0.88203 1.22668 0.96779 1.06212 0.93678 1.20684 0.86649 0.74092 0.86217 1.90770 1.86565 1.44394 1.14272 1.46576 1.09907 1.62669 1.12598 1.21954 0.79632 1.03780 1.02048 1.20560 0.91376 0.74978 0.81272 1.90889 1.57972 1.41610 1.41235 0.92732 0.92754 0.92465 0.91082 0.91402 0.93396 0.90334 0.89028 0.87737 0.89554 0.89591 0.93764 0.90582 0.92503 0.95347 0.94571 0.92585 0.86016 0.85121 0.90820 0.89532 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.90 5.99 -26.73 -0.16 -1.06 16 3 C 0.04 0.31 4.61 -3.83 -0.02 0.29 16 4 N -0.52 -4.99 4.50 -226.91 -1.02 -6.02 16 5 C 0.06 0.77 4.15 -3.83 -0.02 0.75 16 6 C -0.17 -2.39 3.61 -27.88 -0.10 -2.49 16 7 C 0.51 10.39 7.67 -10.98 -0.08 10.31 16 8 O -0.54 -13.27 15.55 5.56 0.09 -13.19 16 9 N -0.60 -12.38 2.86 -182.96 -0.52 -12.90 16 10 C 0.09 1.28 10.24 59.85 0.61 1.89 16 11 C 0.22 5.36 4.23 -5.19 -0.02 5.33 16 12 C -0.53 -15.50 9.94 -34.44 -0.34 -15.84 16 13 H 0.07 2.39 8.06 -52.48 -0.42 1.97 16 14 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 15 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 16 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 17 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 20 C 0.04 0.36 2.29 -67.92 -0.16 0.21 16 21 H 0.10 0.77 6.40 -51.93 -0.33 0.44 16 22 C -0.15 -0.97 5.94 -26.94 -0.16 -1.13 16 23 C 0.53 5.16 8.08 -11.09 -0.09 5.07 16 24 O -0.49 -5.98 17.48 5.61 0.10 -5.88 16 25 N -0.57 -6.00 2.95 -122.73 -0.36 -6.36 16 26 C 0.07 0.61 10.58 59.85 0.63 1.24 16 27 C 0.53 6.44 7.37 -11.08 -0.08 6.36 16 28 O -0.45 -7.43 15.23 5.61 0.09 -7.34 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.62 6.68 -51.93 -0.35 0.27 16 34 H 0.05 0.34 6.02 -51.93 -0.31 0.02 16 35 H 0.08 0.39 6.10 -51.92 -0.32 0.08 16 36 H 0.09 1.27 6.52 -51.93 -0.34 0.93 16 37 H 0.10 1.79 5.78 -51.93 -0.30 1.49 16 38 H 0.09 1.13 5.58 -51.93 -0.29 0.84 16 39 H 0.09 0.93 6.36 -51.93 -0.33 0.60 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 42 H 0.06 0.70 6.44 -51.93 -0.33 0.36 16 43 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 44 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.13 0.70 6.68 -51.93 -0.35 0.35 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.09 0.68 7.83 -51.93 -0.41 0.28 16 50 H 0.09 0.84 7.83 -51.93 -0.41 0.43 16 LS Contribution 394.46 15.07 5.94 5.94 Total: -1.00 -38.04 394.46 -7.06 -45.10 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.76 Total: -1.54 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 0.29 Total: 12.39 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -1.13 Total: -52.65 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: 0.27 Total: -26.41 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.04 -7.06 -45.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282614411.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.545 kcal (2) G-P(sol) polarization free energy of solvation -38.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds