Wall clock time and date at job start Sat Apr 11 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47523 * 2 1 4 4 N 1.46892 * 109.47530 * 179.97438 * 3 2 1 5 5 C 1.46898 * 111.00326 * 287.82153 * 4 3 2 6 6 C 1.52999 * 109.46763 * 294.65720 * 5 4 3 7 7 C 1.50704 * 109.47003 * 181.86258 * 6 5 4 8 8 O 1.21275 * 120.00140 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99698 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00314 * 359.97438 * 9 7 6 11 11 C 1.46500 * 119.99622 * 180.02562 * 9 7 6 12 12 C 1.50700 * 109.47383 * 89.99862 * 11 9 7 13 13 H 1.08003 * 120.00135 * 359.97438 * 12 11 9 14 14 C 1.37874 * 120.00352 * 179.97438 * 12 11 9 15 15 N 1.31509 * 120.00428 * 179.97438 * 14 12 11 16 16 Si 1.86809 * 119.99639 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.46842 * 90.00229 * 16 14 12 18 18 H 1.48503 * 109.46981 * 209.99850 * 16 14 12 19 19 H 1.48497 * 109.47115 * 329.99920 * 16 14 12 20 20 C 1.46906 * 111.00085 * 163.86336 * 4 3 2 21 21 H 1.08998 * 110.65871 * 62.47619 * 20 4 3 22 22 C 1.54225 * 110.60894 * 299.54450 * 20 4 3 23 23 C 1.51312 * 103.55852 * 241.48170 * 22 20 4 24 24 O 1.21223 * 125.40074 * 179.97438 * 23 22 20 25 25 N 1.33875 * 109.20496 * 0.02562 * 23 22 20 26 26 C 1.46504 * 122.76331 * 180.02562 * 25 23 22 27 27 C 1.33880 * 114.47853 * 359.97438 * 25 23 22 28 28 O 1.21222 * 125.39922 * 179.73770 * 27 25 23 29 29 H 1.09000 * 109.47274 * 300.00208 * 1 2 3 30 30 H 1.08995 * 109.46785 * 60.00138 * 1 2 3 31 31 H 1.08997 * 109.47037 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47274 * 239.99792 * 2 1 3 33 33 H 1.09004 * 109.47388 * 119.99953 * 2 1 3 34 34 H 1.09000 * 109.47320 * 59.91976 * 3 2 1 35 35 H 1.09009 * 109.46965 * 299.92448 * 3 2 1 36 36 H 1.08995 * 109.47192 * 54.65481 * 5 4 3 37 37 H 1.09001 * 109.47332 * 174.66180 * 5 4 3 38 38 H 1.08999 * 109.47495 * 301.86347 * 6 5 4 39 39 H 1.09004 * 109.47448 * 61.86412 * 6 5 4 40 40 H 1.09004 * 109.46780 * 90.00716 * 10 9 7 41 41 H 1.09001 * 109.47335 * 209.99700 * 10 9 7 42 42 H 1.08994 * 109.47512 * 330.00977 * 10 9 7 43 43 H 1.08999 * 109.46888 * 209.99677 * 11 9 7 44 44 H 1.08995 * 109.47220 * 329.99451 * 11 9 7 45 45 H 0.97005 * 120.00291 * 180.02562 * 15 14 12 46 46 H 1.09006 * 110.60844 * 122.96098 * 22 20 4 47 47 H 1.09002 * 110.73884 * 0.06271 * 22 20 4 48 48 H 1.09003 * 109.46459 * 269.99171 * 26 25 23 49 49 H 1.08995 * 109.47113 * 29.98742 * 26 25 23 50 50 H 1.08993 * 109.47481 * 149.99578 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0349 1.0229 1.3065 6 6 3.6554 2.0594 2.3659 7 6 4.2338 1.6524 3.6967 8 8 4.8850 0.6335 3.7888 9 7 4.0266 2.4204 4.7847 10 6 3.2395 3.6510 4.6737 11 6 4.5893 2.0250 6.0783 12 6 5.9650 2.6209 6.2309 13 1 6.3791 3.2326 5.4429 14 6 6.6953 2.3853 7.3764 15 7 7.8960 2.9048 7.5094 16 14 5.9789 1.3278 8.7396 17 1 6.3478 -0.0923 8.5102 18 1 6.5197 1.7745 10.0486 19 1 4.4999 1.4607 8.7437 20 6 4.0356 2.7598 -0.3805 21 1 3.7331 3.5184 0.3413 22 6 3.5662 3.1424 -1.7989 23 6 4.8576 3.2735 -2.5766 24 8 4.9441 3.5654 -3.7500 25 7 5.8894 3.0148 -1.7638 26 6 7.2831 3.0580 -2.2133 27 6 5.5429 2.7144 -0.5059 28 8 6.3142 2.4436 0.3892 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6756 1.9567 0.8892 35 1 1.6778 1.9559 -0.8907 36 1 3.6101 0.0559 1.5757 37 1 5.1204 0.9403 1.2515 38 1 4.0523 3.0335 2.0799 39 1 2.5698 2.1182 2.4443 40 1 2.1883 3.4276 4.8562 41 1 3.5903 4.3743 5.4098 42 1 3.3541 4.0665 3.6726 43 1 3.9457 2.3867 6.8802 44 1 4.6564 0.9383 6.1284 45 1 8.4099 2.7387 8.3151 46 1 3.0302 4.0914 -1.7827 47 1 2.9408 2.3571 -2.2235 48 1 7.5781 2.0737 -2.5771 49 1 7.3831 3.7874 -3.0171 50 1 7.9248 3.3449 -1.3804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282614411.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:38 Heat of formation + Delta-G solvation = -110.381751 kcal Electronic energy + Delta-G solvation = -31066.472083 eV Core-core repulsion = 26900.608880 eV Total energy + Delta-G solvation = -4165.863203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.07692 -40.87418 -39.85739 -38.91164 -36.97367 -36.63003 -34.74521 -34.54849 -33.56635 -31.39568 -29.95419 -28.02449 -27.54651 -27.33946 -26.26759 -24.67182 -23.70238 -22.86772 -21.16532 -20.52327 -19.89102 -19.16936 -18.62368 -18.31688 -17.89028 -17.48246 -17.12697 -16.92229 -16.42536 -16.21656 -15.92236 -15.63356 -15.38844 -15.27069 -15.16009 -14.74061 -14.54091 -14.29027 -14.18669 -13.98861 -13.72357 -13.64420 -13.58283 -13.53128 -13.24120 -13.08963 -12.91457 -12.82211 -12.59653 -12.48642 -12.41750 -12.08708 -11.99760 -11.83936 -11.76612 -11.57957 -11.26432 -11.06736 -10.86538 -10.85375 -10.66791 -9.47370 -9.38833 -8.35788 -6.41440 0.39215 1.30481 1.35689 1.43947 1.44432 1.63924 1.80842 2.29377 2.33007 2.71674 2.96858 2.98565 3.19541 3.43970 3.75539 3.91805 3.93964 4.04630 4.16800 4.23096 4.25711 4.30909 4.34571 4.39826 4.46785 4.49898 4.62620 4.65512 4.66560 4.72493 4.75789 4.79336 4.84872 4.94602 4.96500 4.98014 5.01217 5.21351 5.37601 5.38787 5.44613 5.53732 5.61590 5.71599 5.80027 5.99139 6.22172 6.24734 6.60110 6.69276 6.70657 7.19664 7.43740 8.81615 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012095 B = 0.003219 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.483740 B = 8695.665596 C =10307.063002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.042 3.958 4 N -0.517 5.517 5 C 0.069 3.931 6 C -0.154 4.154 7 C 0.499 3.501 8 O -0.596 6.596 9 N -0.610 5.610 10 C 0.077 3.923 11 C 0.224 3.776 12 C -0.538 4.538 13 H 0.023 0.977 14 C 0.008 3.992 15 N -0.947 5.947 16 Si 0.952 3.048 17 H -0.277 1.277 18 H -0.273 1.273 19 H -0.234 1.234 20 C 0.043 3.957 21 H 0.123 0.877 22 C -0.134 4.134 23 C 0.534 3.466 24 O -0.514 6.514 25 N -0.579 5.579 26 C 0.061 3.939 27 C 0.526 3.474 28 O -0.507 6.507 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.268 0.732 46 H 0.164 0.836 47 H 0.151 0.849 48 H 0.076 0.924 49 H 0.099 0.901 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.829 2.360 -20.970 28.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.084 4.084 4 N -0.242 5.242 5 C -0.060 4.060 6 C -0.195 4.195 7 C 0.288 3.712 8 O -0.477 6.477 9 N -0.342 5.342 10 C -0.065 4.065 11 C 0.101 3.899 12 C -0.577 4.577 13 H 0.041 0.959 14 C -0.190 4.190 15 N -0.587 5.587 16 Si 0.774 3.226 17 H -0.203 1.203 18 H -0.199 1.199 19 H -0.157 1.157 20 C -0.068 4.068 21 H 0.140 0.860 22 C -0.173 4.173 23 C 0.325 3.675 24 O -0.388 6.388 25 N -0.322 5.322 26 C -0.080 4.080 27 C 0.314 3.686 28 O -0.378 6.378 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.117 0.883 39 H 0.148 0.852 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.077 0.923 46 H 0.181 0.819 47 H 0.169 0.831 48 H 0.095 0.905 49 H 0.117 0.883 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.704 1.555 -21.320 28.404 hybrid contribution 1.158 0.067 1.580 1.960 sum -17.546 1.622 -19.740 26.461 Atomic orbital electron populations 1.21698 0.94142 1.02003 1.02606 1.21500 0.96370 0.96102 1.01968 1.22551 0.83695 0.98368 1.03793 1.62400 1.10393 1.23385 1.27978 1.21940 1.00860 0.97650 0.85528 1.22231 1.03840 1.02127 0.91313 1.21265 0.79881 0.83247 0.86842 1.90640 1.42358 1.28453 1.86238 1.48004 1.52157 1.24888 1.09132 1.21971 0.95544 0.85254 1.03685 1.19308 0.92605 0.95302 0.82680 1.21588 1.01534 1.31653 1.02901 0.95909 1.25928 0.94922 0.96848 1.01315 1.70065 1.12683 1.46731 1.29261 0.85660 0.80727 0.78465 0.77727 1.20315 1.19856 1.15735 1.22567 0.89466 0.94735 1.00067 0.86008 1.22784 0.95038 1.08896 0.90605 1.21282 0.87449 0.72895 0.85855 1.90766 1.87003 1.45620 1.15437 1.46769 1.10656 1.62176 1.12550 1.22024 0.79564 1.04379 1.02031 1.21265 0.92916 0.73499 0.80880 1.90876 1.59754 1.44205 1.42995 0.92465 0.91112 0.92952 0.91546 0.93717 0.92231 0.86893 0.90002 0.92211 0.88266 0.85218 0.89691 0.91876 0.89423 0.92982 0.96489 0.92264 0.81857 0.83128 0.90503 0.88261 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 71.98 0.71 -0.59 16 2 C -0.12 -1.49 5.99 30.59 0.18 -1.31 16 3 C 0.04 0.41 4.61 86.30 0.40 0.81 16 4 N -0.52 -8.74 4.50 -871.80 -3.92 -12.67 16 5 C 0.07 1.83 4.15 86.30 0.36 2.19 16 6 C -0.15 -3.95 3.61 29.85 0.11 -3.84 16 7 C 0.50 20.31 7.67 87.66 0.67 20.98 16 8 O -0.60 -30.92 15.55 -3.01 -0.05 -30.97 16 9 N -0.61 -24.79 2.86 -851.15 -2.43 -27.22 16 10 C 0.08 2.09 10.24 127.77 1.31 3.40 16 11 C 0.22 11.12 4.23 85.63 0.36 11.48 16 12 C -0.54 -32.79 9.94 25.60 0.25 -32.54 16 13 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 14 C 0.01 0.46 5.47 84.65 0.46 0.92 16 15 N -0.95 -61.66 13.96 21.45 0.30 -61.36 16 16 Si 0.95 45.38 27.47 68.60 1.88 47.26 16 17 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.23 -9.89 6.54 99.48 0.65 -9.23 16 20 C 0.04 0.63 2.29 44.78 0.10 0.73 16 21 H 0.12 1.31 6.40 -2.39 -0.02 1.30 16 22 C -0.13 -1.08 5.94 30.46 0.18 -0.90 16 23 C 0.53 9.11 8.08 87.99 0.71 9.82 16 24 O -0.51 -11.63 17.48 -2.85 -0.05 -11.68 16 25 N -0.58 -11.86 2.95 -780.04 -2.30 -14.17 16 26 C 0.06 1.16 10.58 127.77 1.35 2.51 16 27 C 0.53 12.69 7.37 87.99 0.65 13.34 16 28 O -0.51 -17.84 15.23 -2.85 -0.04 -17.89 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.04 0.76 6.68 -2.39 -0.02 0.74 16 34 H 0.06 0.49 6.02 -2.39 -0.01 0.47 16 35 H 0.11 0.40 6.10 -2.38 -0.01 0.38 16 36 H 0.08 2.32 6.52 -2.39 -0.02 2.30 16 37 H 0.06 2.18 5.78 -2.39 -0.01 2.17 16 38 H 0.10 2.32 5.58 -2.39 -0.01 2.31 16 39 H 0.13 2.20 6.36 -2.39 -0.02 2.18 16 40 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 42 H 0.09 1.81 6.44 -2.39 -0.02 1.80 16 43 H 0.05 2.34 7.13 -2.39 -0.02 2.32 16 44 H 0.02 0.91 6.85 -2.39 -0.02 0.89 16 45 H 0.27 16.17 8.31 -92.70 -0.77 15.40 16 46 H 0.16 0.12 8.14 -2.38 -0.02 0.10 16 47 H 0.15 0.75 6.68 -2.39 -0.02 0.73 16 48 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.10 1.59 7.83 -2.39 -0.02 1.57 16 50 H 0.08 1.65 7.83 -2.39 -0.02 1.64 16 Total: -1.00 -92.47 394.46 2.10 -90.38 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.90 Total: 11.32 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 7.82 Total: 27.00 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -8.36 Total: -115.42 kcal Atomic # 8 Polarization: -60.40 SS G_CDS: -0.14 Total: -60.54 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.26 kcal Total: -92.47 2.10 -90.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282614411.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.005 kcal (2) G-P(sol) polarization free energy of solvation -92.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds