Wall clock time and date at job start Sat Apr 11 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99952 * 2 1 4 4 C 1.52995 * 109.47309 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47521 * 64.99490 * 4 3 2 6 6 C 1.42897 * 114.00297 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47272 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47510 * 179.97438 * 7 6 5 9 9 N 1.30857 * 125.41477 * 305.02999 * 8 7 6 10 10 C 1.33325 * 109.68340 * 179.73934 * 9 8 7 11 11 C 1.36665 * 107.78100 * 0.37365 * 10 9 8 12 12 C 1.46766 * 126.83816 * 179.89677 * 11 10 9 13 13 O 1.21685 * 120.00640 * 350.43560 * 12 11 10 14 14 N 1.34782 * 119.99569 * 170.43682 * 12 11 10 15 15 C 1.46501 * 120.00134 * 0.90446 * 14 12 11 16 16 C 1.50690 * 109.47162 * 82.76880 * 15 14 12 17 17 H 1.07999 * 120.00188 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00111 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00385 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99776 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46663 * 90.00376 * 20 18 16 22 22 H 1.48500 * 109.47221 * 210.00442 * 20 18 16 23 23 H 1.48497 * 109.47173 * 330.00671 * 20 18 16 24 24 C 1.46504 * 119.99993 * 180.90571 * 14 12 11 25 25 C 1.53004 * 109.46658 * 304.43369 * 24 14 12 26 26 C 1.52996 * 109.47303 * 64.43135 * 24 14 12 27 27 N 1.34493 * 125.41846 * 124.99425 * 8 7 6 28 28 H 0.96995 * 126.47441 * 0.05428 * 27 8 7 29 29 H 1.08993 * 109.47282 * 59.99977 * 1 2 3 30 30 H 1.09001 * 109.46571 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46945 * 299.99917 * 1 2 3 32 32 H 1.09001 * 109.47352 * 60.00215 * 3 2 1 33 33 H 1.09007 * 109.46758 * 300.00521 * 3 2 1 34 34 H 1.09002 * 109.46998 * 304.99875 * 4 3 2 35 35 H 1.08996 * 109.47362 * 184.99983 * 4 3 2 36 36 H 1.08997 * 109.46869 * 59.99875 * 6 5 4 37 37 H 1.09011 * 109.46823 * 299.99886 * 6 5 4 38 38 H 1.09002 * 109.47106 * 59.99809 * 7 6 5 39 39 H 1.08998 * 109.47137 * 300.00139 * 7 6 5 40 40 H 1.07993 * 126.10947 * 180.27221 * 10 9 8 41 41 H 1.09002 * 109.46700 * 202.77042 * 15 14 12 42 42 H 1.09003 * 109.46540 * 322.76448 * 15 14 12 43 43 H 0.96992 * 120.00245 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.46989 * 184.43539 * 24 14 12 45 45 H 1.09000 * 109.47553 * 65.26007 * 25 24 14 46 46 H 1.09009 * 109.46692 * 185.25914 * 25 24 14 47 47 H 1.08996 * 109.47018 * 305.25575 * 25 24 14 48 48 H 1.09002 * 109.47214 * 64.95564 * 26 24 14 49 49 H 1.08993 * 109.47366 * 184.95631 * 26 24 14 50 50 H 1.09004 * 109.47378 * 304.95720 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9650 0.5797 -1.2219 6 6 5.3812 0.4192 -1.3245 7 6 5.7247 -0.2340 -2.6647 8 6 7.2183 -0.4026 -2.7732 9 7 8.1009 0.5546 -2.6433 10 6 9.3287 0.0567 -2.7926 11 6 9.2090 -1.2825 -3.0371 12 6 10.3008 -2.2360 -3.2674 13 8 11.4380 -1.8325 -3.4247 14 7 10.0437 -3.5585 -3.3047 15 6 8.6716 -4.0432 -3.1352 16 6 7.9441 -3.9628 -4.4524 17 1 8.4528 -3.5877 -5.3282 18 6 6.6288 -4.3670 -4.5393 19 7 5.9940 -4.2973 -5.6890 20 14 5.7488 -5.0150 -3.0242 21 1 5.0958 -3.8878 -2.3112 22 1 4.7197 -6.0038 -3.4345 23 1 6.7313 -5.6683 -2.1226 24 6 11.1365 -4.5115 -3.5148 25 6 11.8791 -4.1593 -4.8053 26 6 12.1064 -4.4438 -2.3335 27 7 7.8561 -1.5611 -3.0184 28 1 7.4440 -2.4282 -3.1563 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8515 0.5683 0.8410 35 1 3.9785 2.1766 0.0889 36 1 5.7350 -0.2132 -0.5103 37 1 5.8628 1.3951 -1.2623 38 1 5.3708 0.3989 -3.4786 39 1 5.2430 -1.2097 -2.7274 40 1 10.2526 0.6127 -2.7329 41 1 8.6915 -5.0781 -2.7936 42 1 8.1573 -3.4270 -2.3977 43 1 5.0688 -4.5820 -5.7502 44 1 10.7293 -5.5195 -3.5934 45 1 12.3648 -3.1901 -4.6922 46 1 12.6314 -4.9210 -5.0110 47 1 11.1703 -4.1162 -5.6322 48 1 11.6005 -4.7792 -1.4282 49 1 12.9639 -5.0872 -2.5301 50 1 12.4460 -3.4165 -2.2006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549969521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:55 Heat of formation + Delta-G solvation = -58.375661 kcal Electronic energy + Delta-G solvation = -30539.557322 eV Core-core repulsion = 26375.949272 eV Total energy + Delta-G solvation = -4163.608050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77282 -39.19420 -38.55600 -37.31782 -35.73816 -33.84535 -32.84376 -32.28680 -31.23987 -30.17857 -28.32442 -27.50886 -26.74259 -26.41833 -23.70931 -23.04771 -22.69658 -22.38791 -21.11687 -19.76765 -18.96393 -17.36269 -17.18604 -16.95821 -16.60714 -15.96417 -15.73958 -15.55827 -15.38787 -15.25323 -14.96414 -14.47845 -14.03220 -13.82081 -13.57568 -13.52986 -13.27778 -13.10704 -12.89438 -12.77239 -12.69730 -12.33306 -12.20638 -11.85231 -11.79818 -11.54344 -11.52205 -11.25047 -11.17237 -11.13103 -10.99294 -10.80930 -10.58084 -10.42514 -9.93366 -9.89904 -9.78349 -9.58719 -9.51299 -9.11476 -9.04164 -8.12609 -7.78823 -6.55641 -4.63033 1.94551 2.90816 3.01531 3.05477 3.22180 3.36274 3.56974 3.63251 3.92313 3.93671 4.03433 4.70568 4.75873 4.80430 4.97222 5.05413 5.12884 5.13379 5.16334 5.19636 5.29582 5.40975 5.47657 5.49171 5.53751 5.54455 5.55913 5.66682 5.73731 5.87252 5.96632 5.99710 6.08837 6.11000 6.15170 6.21848 6.30218 6.37462 6.51449 6.64030 6.79860 6.92812 7.01943 7.10062 7.18951 7.24609 7.86417 7.95340 8.11150 8.43108 8.55320 8.77959 8.97395 10.55000 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003237 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.591427 B = 8647.832786 C =10109.634251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.065 3.935 5 O -0.381 6.381 6 C 0.074 3.926 7 C -0.033 4.033 8 C 0.213 3.787 9 N -0.501 5.501 10 C 0.044 3.956 11 C -0.067 4.067 12 C 0.600 3.400 13 O -0.549 6.549 14 N -0.587 5.587 15 C 0.193 3.807 16 C -0.564 4.564 17 H 0.088 0.912 18 C 0.080 3.920 19 N -0.865 5.865 20 Si 0.845 3.155 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.258 1.258 24 C 0.150 3.850 25 C -0.167 4.167 26 C -0.166 4.166 27 N -0.519 5.519 28 H 0.443 0.557 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.177 0.823 41 H 0.046 0.954 42 H 0.021 0.979 43 H 0.274 0.726 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.049 0.951 49 H 0.060 0.940 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.651 6.123 11.193 13.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.012 4.012 5 O -0.300 6.300 6 C -0.003 4.003 7 C -0.072 4.072 8 C -0.051 4.051 9 N -0.221 5.221 10 C -0.111 4.111 11 C -0.187 4.187 12 C 0.389 3.611 13 O -0.428 6.428 14 N -0.317 5.317 15 C 0.070 3.930 16 C -0.602 4.602 17 H 0.106 0.894 18 C -0.127 4.127 19 N -0.499 5.499 20 Si 0.669 3.331 21 H -0.188 1.188 22 H -0.195 1.195 23 H -0.182 1.182 24 C 0.046 3.954 25 C -0.225 4.225 26 C -0.224 4.224 27 N -0.135 5.135 28 H 0.300 0.700 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.194 0.806 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.079 0.921 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.480 6.756 10.991 13.657 hybrid contribution -0.823 -1.503 0.486 1.781 sum -5.302 5.253 11.477 13.690 Atomic orbital electron populations 1.22743 0.81204 1.02873 0.99739 1.87997 1.19482 1.27316 1.95337 1.22580 0.92554 0.85498 1.00767 1.22480 0.93133 0.97666 0.87954 1.87899 1.22286 1.82125 1.37714 1.22334 0.80893 1.00391 0.96673 1.19746 0.85794 1.03316 0.98375 1.22817 0.95680 0.82707 1.03936 1.69989 0.99300 1.30648 1.22208 1.22440 0.96038 0.90120 1.02511 1.21140 0.83817 0.97054 1.16648 1.16835 0.86505 0.81320 0.76468 1.90681 1.21168 1.78713 1.52276 1.47892 1.08925 1.05005 1.69925 1.20147 0.79358 0.96115 0.97348 1.21513 0.97094 1.45905 0.95686 0.89423 1.24975 0.97204 0.94416 0.96141 1.69849 1.11836 1.44116 1.24115 0.87314 0.81084 0.81088 0.83619 1.18785 1.19472 1.18197 1.20913 0.86949 0.92439 0.95055 1.22202 1.00323 1.03072 0.96898 1.22196 0.98971 1.03481 0.97721 1.45060 1.06331 1.13055 1.49044 0.70000 0.93980 0.89605 0.94327 0.91956 0.92294 0.92507 0.91613 0.93281 0.91636 0.88155 0.89392 0.80617 0.93604 0.96190 0.91560 0.89735 0.90169 0.92769 0.92272 0.93190 0.92137 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.76 10.67 -40.08 -0.43 -5.19 16 3 C 0.06 0.62 6.32 37.16 0.23 0.85 16 4 C 0.06 0.70 6.32 37.16 0.23 0.94 16 5 O -0.38 -5.51 10.31 -40.08 -0.41 -5.92 16 6 C 0.07 1.07 5.89 37.16 0.22 1.29 16 7 C -0.03 -0.55 6.21 -27.88 -0.17 -0.72 16 8 C 0.21 4.07 7.40 -155.62 -1.15 2.92 16 9 N -0.50 -9.62 11.16 -10.58 -0.12 -9.74 16 10 C 0.04 0.86 11.67 -17.47 -0.20 0.65 16 11 C -0.07 -1.41 6.62 -82.14 -0.54 -1.95 16 12 C 0.60 12.72 6.98 -12.81 -0.09 12.64 16 13 O -0.55 -11.88 13.19 5.20 0.07 -11.81 16 14 N -0.59 -11.93 2.43 -168.97 -0.41 -12.34 16 15 C 0.19 4.12 3.80 -5.20 -0.02 4.10 16 16 C -0.56 -13.92 7.91 -34.44 -0.27 -14.19 16 17 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 18 C 0.08 2.00 5.18 -17.82 -0.09 1.91 16 19 N -0.86 -23.36 13.96 55.43 0.77 -22.58 16 20 Si 0.84 18.06 26.98 -169.99 -4.59 13.48 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.26 -5.24 6.54 56.52 0.37 -4.87 16 24 C 0.15 2.63 3.27 -67.93 -0.22 2.40 16 25 C -0.17 -2.88 8.94 37.16 0.33 -2.55 16 26 C -0.17 -2.52 9.24 37.16 0.34 -2.17 16 27 N -0.52 -10.84 4.85 -7.02 -0.03 -10.87 16 28 H 0.44 9.63 3.04 -40.82 -0.12 9.51 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 38 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 39 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.18 2.99 8.06 -52.49 -0.42 2.57 16 41 H 0.05 0.95 6.87 -51.93 -0.36 0.59 16 42 H 0.02 0.44 4.62 -51.93 -0.24 0.20 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.08 1.41 7.74 -51.93 -0.40 1.01 16 45 H 0.08 1.49 6.02 -51.93 -0.31 1.18 16 46 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.07 1.24 6.42 -51.93 -0.33 0.90 16 LS Contribution 402.30 15.07 6.06 6.06 Total: -1.00 -29.52 402.30 -7.50 -37.02 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -8.12 Total: 14.41 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -0.29 Total: 7.49 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.21 Total: -55.54 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.77 Total: -22.93 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -4.59 Total: 13.48 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.52 -7.50 -37.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549969521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.361 kcal (2) G-P(sol) polarization free energy of solvation -29.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds