Wall clock time and date at job start Sat Apr 11 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99952 * 2 1 4 4 C 1.52995 * 109.47309 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47521 * 64.99490 * 4 3 2 6 6 C 1.42897 * 114.00297 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47272 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47510 * 179.97438 * 7 6 5 9 9 N 1.30857 * 125.41477 * 305.02999 * 8 7 6 10 10 C 1.33325 * 109.68340 * 179.73934 * 9 8 7 11 11 C 1.36665 * 107.78100 * 0.37365 * 10 9 8 12 12 C 1.46766 * 126.83816 * 179.89677 * 11 10 9 13 13 O 1.21685 * 120.00640 * 350.43560 * 12 11 10 14 14 N 1.34782 * 119.99569 * 170.43682 * 12 11 10 15 15 C 1.46501 * 120.00134 * 0.90446 * 14 12 11 16 16 C 1.50690 * 109.47162 * 82.76880 * 15 14 12 17 17 H 1.07999 * 120.00188 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00111 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00385 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99776 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46663 * 90.00376 * 20 18 16 22 22 H 1.48500 * 109.47221 * 210.00442 * 20 18 16 23 23 H 1.48497 * 109.47173 * 330.00671 * 20 18 16 24 24 C 1.46504 * 119.99993 * 180.90571 * 14 12 11 25 25 C 1.53004 * 109.46658 * 304.43369 * 24 14 12 26 26 C 1.52996 * 109.47303 * 64.43135 * 24 14 12 27 27 N 1.34493 * 125.41846 * 124.99425 * 8 7 6 28 28 H 0.96995 * 126.47441 * 0.05428 * 27 8 7 29 29 H 1.08993 * 109.47282 * 59.99977 * 1 2 3 30 30 H 1.09001 * 109.46571 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46945 * 299.99917 * 1 2 3 32 32 H 1.09001 * 109.47352 * 60.00215 * 3 2 1 33 33 H 1.09007 * 109.46758 * 300.00521 * 3 2 1 34 34 H 1.09002 * 109.46998 * 304.99875 * 4 3 2 35 35 H 1.08996 * 109.47362 * 184.99983 * 4 3 2 36 36 H 1.08997 * 109.46869 * 59.99875 * 6 5 4 37 37 H 1.09011 * 109.46823 * 299.99886 * 6 5 4 38 38 H 1.09002 * 109.47106 * 59.99809 * 7 6 5 39 39 H 1.08998 * 109.47137 * 300.00139 * 7 6 5 40 40 H 1.07993 * 126.10947 * 180.27221 * 10 9 8 41 41 H 1.09002 * 109.46700 * 202.77042 * 15 14 12 42 42 H 1.09003 * 109.46540 * 322.76448 * 15 14 12 43 43 H 0.96992 * 120.00245 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.46989 * 184.43539 * 24 14 12 45 45 H 1.09000 * 109.47553 * 65.26007 * 25 24 14 46 46 H 1.09009 * 109.46692 * 185.25914 * 25 24 14 47 47 H 1.08996 * 109.47018 * 305.25575 * 25 24 14 48 48 H 1.09002 * 109.47214 * 64.95564 * 26 24 14 49 49 H 1.08993 * 109.47366 * 184.95631 * 26 24 14 50 50 H 1.09004 * 109.47378 * 304.95720 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9650 0.5797 -1.2219 6 6 5.3812 0.4192 -1.3245 7 6 5.7247 -0.2340 -2.6647 8 6 7.2183 -0.4026 -2.7732 9 7 8.1009 0.5546 -2.6433 10 6 9.3287 0.0567 -2.7926 11 6 9.2090 -1.2825 -3.0371 12 6 10.3008 -2.2360 -3.2674 13 8 11.4380 -1.8325 -3.4247 14 7 10.0437 -3.5585 -3.3047 15 6 8.6716 -4.0432 -3.1352 16 6 7.9441 -3.9628 -4.4524 17 1 8.4528 -3.5877 -5.3282 18 6 6.6288 -4.3670 -4.5393 19 7 5.9940 -4.2973 -5.6890 20 14 5.7488 -5.0150 -3.0242 21 1 5.0958 -3.8878 -2.3112 22 1 4.7197 -6.0038 -3.4345 23 1 6.7313 -5.6683 -2.1226 24 6 11.1365 -4.5115 -3.5148 25 6 11.8791 -4.1593 -4.8053 26 6 12.1064 -4.4438 -2.3335 27 7 7.8561 -1.5611 -3.0184 28 1 7.4440 -2.4282 -3.1563 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8515 0.5683 0.8410 35 1 3.9785 2.1766 0.0889 36 1 5.7350 -0.2132 -0.5103 37 1 5.8628 1.3951 -1.2623 38 1 5.3708 0.3989 -3.4786 39 1 5.2430 -1.2097 -2.7274 40 1 10.2526 0.6127 -2.7329 41 1 8.6915 -5.0781 -2.7936 42 1 8.1573 -3.4270 -2.3977 43 1 5.0688 -4.5820 -5.7502 44 1 10.7293 -5.5195 -3.5934 45 1 12.3648 -3.1901 -4.6922 46 1 12.6314 -4.9210 -5.0110 47 1 11.1703 -4.1162 -5.6322 48 1 11.6005 -4.7792 -1.4282 49 1 12.9639 -5.0872 -2.5301 50 1 12.4460 -3.4165 -2.2006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000549969521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:55 Heat of formation + Delta-G solvation = -77.006713 kcal Electronic energy + Delta-G solvation = -30540.365225 eV Core-core repulsion = 26375.949272 eV Total energy + Delta-G solvation = -4164.415953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.33472 -40.76912 -39.45853 -38.23347 -37.38104 -35.48928 -34.24126 -33.91777 -32.76246 -31.13650 -30.00007 -28.99406 -28.05199 -27.13046 -25.23851 -24.43828 -24.07029 -23.49533 -22.64103 -21.26413 -20.50342 -19.28282 -18.45273 -18.01951 -17.80367 -17.32144 -16.98178 -16.80515 -16.58726 -16.37355 -16.20653 -16.05909 -15.43507 -15.25553 -15.08679 -14.84554 -14.68046 -14.48865 -14.25246 -14.11235 -14.10888 -13.73783 -13.46061 -13.18646 -12.89087 -12.81797 -12.73793 -12.68980 -12.48959 -12.29039 -12.20197 -12.10862 -11.95327 -11.92794 -11.84885 -11.33477 -11.16188 -10.93347 -10.67808 -10.64570 -10.57832 -9.73938 -9.36386 -8.50098 -6.62689 0.35768 1.23055 1.29112 1.35935 1.73117 1.89627 2.12563 2.17293 2.37272 2.72259 2.81073 2.88599 3.33995 3.62003 3.90926 3.98274 4.06186 4.16626 4.17480 4.18902 4.25250 4.25448 4.35519 4.42448 4.44576 4.47322 4.51985 4.58146 4.58485 4.61820 4.73723 4.76646 4.77056 4.81562 4.86182 4.87201 4.93134 4.98669 5.01385 5.14300 5.29256 5.39150 5.57771 5.72152 5.99541 6.14438 6.29653 6.31738 6.40987 6.51526 6.86379 7.00331 7.17588 8.64444 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003237 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.591427 B = 8647.832786 C =10109.634251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.059 3.941 4 C 0.055 3.945 5 O -0.402 6.402 6 C 0.085 3.915 7 C -0.035 4.035 8 C 0.217 3.783 9 N -0.502 5.502 10 C 0.051 3.949 11 C -0.096 4.096 12 C 0.594 3.406 13 O -0.559 6.559 14 N -0.590 5.590 15 C 0.199 3.801 16 C -0.557 4.557 17 H 0.037 0.963 18 C 0.038 3.962 19 N -0.914 5.914 20 Si 0.900 3.100 21 H -0.252 1.252 22 H -0.271 1.271 23 H -0.233 1.233 24 C 0.137 3.863 25 C -0.159 4.159 26 C -0.154 4.154 27 N -0.533 5.533 28 H 0.438 0.562 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.197 0.803 41 H 0.062 0.938 42 H 0.029 0.971 43 H 0.276 0.724 44 H 0.095 0.905 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.029 0.971 48 H 0.058 0.942 49 H 0.089 0.911 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.900 6.132 13.687 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.017 4.017 4 C -0.021 4.021 5 O -0.322 6.322 6 C 0.008 3.992 7 C -0.074 4.074 8 C -0.047 4.047 9 N -0.223 5.223 10 C -0.105 4.105 11 C -0.214 4.214 12 C 0.383 3.617 13 O -0.440 6.440 14 N -0.320 5.320 15 C 0.076 3.924 16 C -0.596 4.596 17 H 0.055 0.945 18 C -0.165 4.165 19 N -0.550 5.550 20 Si 0.720 3.280 21 H -0.177 1.177 22 H -0.196 1.196 23 H -0.156 1.156 24 C 0.035 3.965 25 C -0.217 4.217 26 C -0.212 4.212 27 N -0.148 5.148 28 H 0.294 0.706 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.214 0.786 41 H 0.080 0.920 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.083 0.917 46 H 0.106 0.894 47 H 0.048 0.952 48 H 0.077 0.923 49 H 0.108 0.892 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.700 6.772 13.502 15.819 hybrid contribution -0.745 -1.430 -0.370 1.654 sum -5.445 5.342 13.132 15.186 Atomic orbital electron populations 1.22899 0.79649 1.03508 1.00976 1.87937 1.21407 1.28944 1.95625 1.22745 0.91732 0.84921 1.02269 1.22792 0.94097 0.98708 0.86503 1.87867 1.21912 1.82791 1.39666 1.22166 0.81400 1.00582 0.95090 1.19848 0.84006 1.03257 1.00246 1.23362 0.96756 0.82141 1.02479 1.70045 0.99252 1.30396 1.22558 1.22834 0.96842 0.89732 1.01050 1.21333 0.83938 0.97821 1.18356 1.16975 0.86549 0.81731 0.76463 1.90663 1.21478 1.78928 1.52914 1.47989 1.09139 1.05275 1.69616 1.20018 0.79786 0.97066 0.95527 1.21430 0.97286 1.45385 0.95486 0.94508 1.25673 0.97688 0.94312 0.98868 1.69985 1.12385 1.45909 1.26722 0.86423 0.80321 0.80856 0.80364 1.17664 1.19607 1.15623 1.21250 0.86867 0.92241 0.96175 1.22122 1.00242 1.03403 0.95916 1.22094 0.99272 1.02996 0.96836 1.45065 1.06527 1.13277 1.49885 0.70643 0.93497 0.89403 0.92287 0.88901 0.92209 0.92450 0.89124 0.93139 0.90674 0.87495 0.90342 0.78605 0.91988 0.95348 0.91439 0.88693 0.91748 0.89392 0.95161 0.92264 0.89227 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -9.89 10.67 -144.34 -1.54 -11.43 16 3 C 0.06 1.05 6.32 71.98 0.45 1.51 16 4 C 0.06 1.09 6.32 71.98 0.45 1.55 16 5 O -0.40 -11.11 10.31 -144.34 -1.49 -12.60 16 6 C 0.08 2.32 5.89 71.98 0.42 2.75 16 7 C -0.03 -1.12 6.21 29.85 0.19 -0.93 16 8 C 0.22 8.21 7.40 138.20 1.02 9.23 16 9 N -0.50 -18.84 11.16 -187.40 -2.09 -20.93 16 10 C 0.05 1.93 11.67 84.10 0.98 2.91 16 11 C -0.10 -4.05 6.62 40.01 0.26 -3.78 16 12 C 0.59 25.33 6.98 86.47 0.60 25.93 16 13 O -0.56 -24.32 13.19 -4.30 -0.06 -24.38 16 14 N -0.59 -23.86 2.43 -806.71 -1.96 -25.82 16 15 C 0.20 8.39 3.80 85.63 0.33 8.72 16 16 C -0.56 -28.16 7.91 25.60 0.20 -27.96 16 17 H 0.04 2.20 8.06 -2.91 -0.02 2.18 16 18 C 0.04 1.92 5.18 84.66 0.44 2.36 16 19 N -0.91 -50.81 13.96 21.45 0.30 -50.52 16 20 Si 0.90 36.50 26.98 68.60 1.85 38.35 16 21 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.23 -8.52 6.54 99.48 0.65 -7.87 16 24 C 0.14 4.64 3.27 44.99 0.15 4.79 16 25 C -0.16 -5.43 8.94 71.98 0.64 -4.79 16 26 C -0.15 -4.34 9.24 71.98 0.67 -3.67 16 27 N -0.53 -22.29 4.85 -176.12 -0.85 -23.14 16 28 H 0.44 19.13 3.04 -92.71 -0.28 18.85 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 39 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.20 6.47 8.06 -2.91 -0.02 6.44 16 41 H 0.06 2.43 6.87 -2.39 -0.02 2.41 16 42 H 0.03 1.20 4.62 -2.39 -0.01 1.19 16 43 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 44 H 0.09 3.01 7.74 -2.39 -0.02 2.99 16 45 H 0.06 2.40 6.02 -2.39 -0.01 2.39 16 46 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 47 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.05 1.75 6.42 -2.39 -0.02 1.74 16 Total: -1.00 -65.44 402.30 2.82 -62.62 By element: Atomic # 1 Polarization: 47.00 SS G_CDS: 0.60 Total: 47.60 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 8.06 Total: 20.26 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -4.60 Total: -120.42 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -3.08 Total: -48.41 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 1.85 Total: 38.35 kcal Total: -65.44 2.82 -62.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549969521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.385 kcal (2) G-P(sol) polarization free energy of solvation -65.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds