Wall clock time and date at job start Sat Apr 11 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47358 * 2 1 4 4 N 1.46500 * 109.47241 * 120.00506 * 2 1 3 5 5 C 1.34774 * 119.99972 * 84.99919 * 4 2 1 6 6 O 1.21585 * 120.00226 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99856 * 180.02562 * 5 4 2 8 8 C 1.47017 * 125.64941 * 359.95348 * 7 5 4 9 9 C 1.54328 * 107.27380 * 178.97755 * 8 7 5 10 10 C 1.55158 * 102.93816 * 337.81200 * 9 8 7 11 11 C 1.47425 * 125.64772 * 180.02562 * 7 5 4 12 12 H 1.08996 * 110.46462 * 85.20496 * 11 7 5 13 13 C 1.50701 * 110.36607 * 322.92744 * 11 7 5 14 14 O 1.21283 * 119.99930 * 344.58984 * 13 11 7 15 15 N 1.34779 * 120.00087 * 164.59390 * 13 11 7 16 16 C 1.47418 * 125.64604 * 359.95786 * 15 13 11 17 17 C 1.55388 * 104.87171 * 204.16963 * 16 15 13 18 18 C 1.55155 * 101.36757 * 323.01585 * 17 16 15 19 19 O 1.42905 * 110.72265 * 277.04478 * 18 17 16 20 20 C 1.50701 * 110.72200 * 153.94682 * 18 17 16 21 21 H 1.08000 * 119.99666 * 243.84538 * 20 18 17 22 22 C 1.37875 * 120.00020 * 63.84654 * 20 18 17 23 23 N 1.31514 * 120.00056 * 359.97438 * 22 20 18 24 24 Si 1.86799 * 120.00248 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47056 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47253 * 119.99841 * 24 22 20 27 27 H 1.48495 * 109.47433 * 239.99969 * 24 22 20 28 28 C 1.47023 * 125.64775 * 179.97438 * 15 13 11 29 29 H 1.08999 * 109.46791 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46863 * 299.99634 * 1 2 3 31 31 H 1.09002 * 109.46558 * 59.99718 * 1 2 3 32 32 H 1.09004 * 109.47128 * 240.00594 * 2 1 3 33 33 H 1.09002 * 109.47542 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47528 * 300.00430 * 3 2 1 35 35 H 1.09004 * 109.46516 * 60.00220 * 3 2 1 36 36 H 0.97000 * 119.99780 * 264.99602 * 4 2 1 37 37 H 1.09000 * 109.88050 * 59.56043 * 8 7 5 38 38 H 1.09002 * 110.01364 * 298.46931 * 8 7 5 39 39 H 1.08991 * 110.72192 * 219.44948 * 9 8 7 40 40 H 1.08998 * 110.71770 * 96.16742 * 9 8 7 41 41 H 1.09004 * 111.00237 * 277.42345 * 10 9 8 42 42 H 1.08999 * 110.99990 * 153.57750 * 10 9 8 43 43 H 1.09003 * 110.37061 * 322.99857 * 16 15 13 44 44 H 1.08994 * 110.37044 * 85.22160 * 16 15 13 45 45 H 1.09006 * 111.19119 * 204.98499 * 17 16 15 46 46 H 1.08997 * 111.02739 * 80.97988 * 17 16 15 47 47 H 0.96696 * 114.00036 * 296.15508 * 19 18 17 48 48 H 0.97001 * 120.00180 * 180.02562 * 23 22 20 49 49 H 1.09006 * 109.88369 * 59.48864 * 28 15 13 50 50 H 1.09002 * 109.88440 * 298.32675 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -2.0323 1.1942 6 8 1.8575 -2.6694 0.2000 7 7 2.5959 -2.6678 2.2948 8 6 2.9800 -2.0237 3.5593 9 6 3.4027 -3.1432 4.5338 10 6 2.6954 -4.3956 3.9521 11 6 2.7843 -4.1237 2.4295 12 1 3.7618 -4.4184 2.0477 13 6 1.6927 -4.8635 1.7000 14 8 0.6874 -4.2777 1.3575 15 7 1.8334 -6.1761 1.4283 16 6 2.9978 -7.0071 1.7845 17 6 2.9768 -8.1805 0.7660 18 6 1.4528 -8.4335 0.6223 19 8 0.9759 -9.2644 1.6826 20 6 1.1384 -9.0485 -0.7171 21 1 0.5292 -8.5108 -1.4285 22 6 1.6284 -10.2976 -1.0343 23 7 2.3707 -10.9521 -0.1681 24 14 1.2381 -11.0603 -2.6942 25 1 0.3916 -10.1275 -3.4808 26 1 2.5021 -11.3202 -3.4290 27 1 0.5109 -12.3392 -2.4926 28 6 0.8513 -7.0162 0.7273 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 2.2491 -0.1824 1.9894 37 1 2.1313 -1.4763 3.9692 38 1 3.8146 -1.3427 3.3926 39 1 3.0458 -2.9321 5.5418 40 1 4.4849 -3.2730 4.5259 41 1 1.6572 -4.4458 4.2804 42 1 3.2321 -5.3063 4.2182 43 1 3.9189 -6.4333 1.6824 44 1 2.8975 -7.3845 2.8021 45 1 3.4825 -9.0591 1.1667 46 1 3.4144 -7.8800 -0.1859 47 1 1.3527 -10.1550 1.6842 48 1 2.7158 -11.8308 -0.3913 49 1 0.6669 -6.6171 -0.2701 50 1 -0.0795 -7.0492 1.2935 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:58 Heat of formation + Delta-G solvation = -102.944241 kcal Electronic energy + Delta-G solvation = -31504.088666 eV Core-core repulsion = 27338.547977 eV Total energy + Delta-G solvation = -4165.540688 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.63074 -39.04010 -37.77145 -36.70443 -35.69125 -34.20148 -32.33641 -32.13580 -30.53744 -30.14821 -29.01561 -28.03321 -27.32957 -25.20461 -24.00066 -22.48101 -21.68097 -21.27617 -20.27366 -19.52435 -18.91107 -17.66357 -17.39127 -16.95953 -16.11308 -15.40978 -15.25102 -15.00753 -14.88342 -14.73687 -14.36180 -14.09309 -14.06353 -13.69618 -13.32775 -13.10589 -12.97139 -12.78512 -12.57397 -12.46269 -12.41708 -12.13411 -11.96368 -11.59793 -11.51627 -11.48793 -11.40931 -11.30345 -11.26001 -11.02341 -10.99171 -10.84902 -10.54074 -10.41598 -10.06209 -9.80671 -9.36323 -9.25266 -8.97458 -8.63885 -8.43274 -8.16039 -7.81301 -6.24965 -4.31161 2.52375 3.22526 3.24281 3.31221 3.37157 3.44320 3.66102 4.02671 4.31632 4.33754 4.46125 4.69836 4.74256 4.93632 4.95637 5.04761 5.08695 5.11354 5.18376 5.39140 5.43701 5.50680 5.56780 5.59829 5.65836 5.66325 5.70661 5.76150 5.83682 5.92297 5.96499 6.00406 6.07601 6.13787 6.28217 6.35007 6.54061 6.62793 6.83681 6.99058 7.02254 7.09157 7.36568 7.40897 7.78413 8.07519 8.08133 8.27874 8.71367 8.77255 8.94107 9.36132 9.46440 10.82830 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.003095 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.675923 B = 9043.497465 C =10332.481931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.156 3.844 3 C -0.158 4.158 4 N -0.744 5.744 5 C 0.723 3.277 6 O -0.552 6.552 7 N -0.625 5.625 8 C 0.102 3.898 9 C -0.127 4.127 10 C -0.121 4.121 11 C 0.141 3.859 12 H 0.092 0.908 13 C 0.521 3.479 14 O -0.518 6.518 15 N -0.609 5.609 16 C 0.095 3.905 17 C -0.134 4.134 18 C 0.247 3.753 19 O -0.586 6.586 20 C -0.531 4.531 21 H 0.065 0.935 22 C 0.071 3.929 23 N -0.898 5.898 24 Si 0.902 3.098 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.282 1.282 28 C 0.128 3.872 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.389 0.611 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.383 0.617 48 H 0.267 0.733 49 H 0.070 0.930 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.081 19.734 9.791 22.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 C -0.216 4.216 4 N -0.401 5.401 5 C 0.424 3.576 6 O -0.426 6.426 7 N -0.365 5.365 8 C -0.021 4.021 9 C -0.165 4.165 10 C -0.160 4.160 11 C 0.034 3.966 12 H 0.110 0.890 13 C 0.307 3.693 14 O -0.393 6.393 15 N -0.344 5.344 16 C -0.028 4.028 17 C -0.173 4.173 18 C 0.207 3.793 19 O -0.395 6.395 20 C -0.570 4.570 21 H 0.083 0.917 22 C -0.131 4.131 23 N -0.538 5.538 24 Si 0.730 3.270 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.208 1.208 28 C 0.006 3.994 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.223 0.777 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.105 0.895 46 H 0.085 0.915 47 H 0.234 0.766 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.008 20.087 8.914 22.539 hybrid contribution 0.402 -0.752 -0.574 1.028 sum 5.409 19.335 8.339 21.741 Atomic orbital electron populations 1.22205 0.95513 1.03223 1.01350 1.20738 0.93998 0.91906 0.88227 1.22071 1.01507 0.95322 1.02678 1.45185 1.72661 1.05171 1.17065 1.15347 0.78043 0.81589 0.82580 1.91020 1.54344 1.64832 1.32366 1.47297 1.70600 1.05980 1.12656 1.21953 0.99455 0.96184 0.84529 1.22602 1.01180 0.93992 0.98723 1.22748 1.02597 0.98906 0.91741 1.21608 0.98241 0.80405 0.96389 0.89045 1.19831 0.88257 0.80813 0.80408 1.90694 1.30585 1.66109 1.51955 1.48493 1.20915 1.07772 1.57228 1.22559 0.87318 0.93188 0.99693 1.23370 1.01221 0.95674 0.97059 1.19458 0.88044 0.85402 0.86423 1.86114 1.71888 1.28835 1.52712 1.21598 1.32652 1.02489 1.00214 0.91723 1.24980 0.93815 0.96675 0.97607 1.69651 1.34694 1.14080 1.35403 0.86364 0.78231 0.79093 0.83327 1.19572 1.20853 1.20794 1.21994 0.91251 0.90122 0.95986 0.91436 0.92935 0.91987 0.89517 0.92156 0.90960 0.92315 0.77729 0.91797 0.91577 0.89620 0.90100 0.89960 0.88773 0.92543 0.92022 0.89530 0.91517 0.76599 0.92309 0.91205 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.16 0.35 -1.55 16 2 C 0.16 1.75 3.18 -67.93 -0.22 1.54 16 3 C -0.16 -1.14 9.38 37.16 0.35 -0.80 16 4 N -0.74 -8.98 5.04 -58.68 -0.30 -9.28 16 5 C 0.72 12.04 7.70 -86.92 -0.67 11.37 16 6 O -0.55 -12.14 13.38 -18.78 -0.25 -12.39 16 7 N -0.63 -8.85 3.14 -170.02 -0.53 -9.38 16 8 C 0.10 0.90 6.15 -3.06 -0.02 0.88 16 9 C -0.13 -0.94 6.95 -24.89 -0.17 -1.12 16 10 C -0.12 -1.34 6.49 -24.57 -0.16 -1.49 16 11 C 0.14 2.13 2.91 -67.56 -0.20 1.93 16 12 H 0.09 1.30 7.06 -51.93 -0.37 0.93 16 13 C 0.52 10.68 6.27 -10.98 -0.07 10.62 16 14 O -0.52 -12.62 14.09 -18.52 -0.26 -12.88 16 15 N -0.61 -12.81 3.33 -170.22 -0.57 -13.38 16 16 C 0.10 1.75 6.70 -2.27 -0.02 1.74 16 17 C -0.13 -2.97 5.61 -24.32 -0.14 -3.10 16 18 C 0.25 6.14 0.85 -89.94 -0.08 6.06 16 19 O -0.59 -14.93 13.07 -35.23 -0.46 -15.39 16 20 C -0.53 -14.37 8.21 -34.44 -0.28 -14.65 16 21 H 0.06 1.79 7.55 -52.49 -0.40 1.39 16 22 C 0.07 1.87 5.28 -17.82 -0.09 1.77 16 23 N -0.90 -23.31 10.67 55.43 0.59 -22.72 16 24 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.13 3.09 6.22 -3.06 -0.02 3.07 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.18 7.58 -51.93 -0.39 0.78 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.39 3.46 7.59 -40.82 -0.31 3.15 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.88 7.00 -51.93 -0.36 0.51 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.09 1.95 7.64 -51.93 -0.40 1.55 16 46 H 0.07 1.54 8.04 -51.93 -0.42 1.12 16 47 H 0.38 9.75 7.23 45.56 0.33 10.08 16 48 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 49 H 0.07 1.78 7.65 -51.93 -0.40 1.39 16 50 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 LS Contribution 394.42 15.07 5.94 5.94 Total: -1.00 -34.39 394.42 -10.04 -44.43 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -7.76 Total: 13.01 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: -1.43 Total: 16.27 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.80 Total: -54.76 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -0.97 Total: -40.67 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.39 -10.04 -44.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.514 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds