Wall clock time and date at job start Sat Apr 11 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47358 * 2 1 4 4 N 1.46500 * 109.47241 * 120.00506 * 2 1 3 5 5 C 1.34774 * 119.99972 * 84.99919 * 4 2 1 6 6 O 1.21585 * 120.00226 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99856 * 180.02562 * 5 4 2 8 8 C 1.47017 * 125.64941 * 359.95348 * 7 5 4 9 9 C 1.54328 * 107.27380 * 178.97755 * 8 7 5 10 10 C 1.55158 * 102.93816 * 337.81200 * 9 8 7 11 11 C 1.47425 * 125.64772 * 180.02562 * 7 5 4 12 12 H 1.08996 * 110.46462 * 85.20496 * 11 7 5 13 13 C 1.50701 * 110.36607 * 322.92744 * 11 7 5 14 14 O 1.21283 * 119.99930 * 344.58984 * 13 11 7 15 15 N 1.34779 * 120.00087 * 164.59390 * 13 11 7 16 16 C 1.47418 * 125.64604 * 359.95786 * 15 13 11 17 17 C 1.55388 * 104.87171 * 204.16963 * 16 15 13 18 18 C 1.55155 * 101.36757 * 323.01585 * 17 16 15 19 19 O 1.42905 * 110.72265 * 277.04478 * 18 17 16 20 20 C 1.50701 * 110.72200 * 153.94682 * 18 17 16 21 21 H 1.08000 * 119.99666 * 243.84538 * 20 18 17 22 22 C 1.37875 * 120.00020 * 63.84654 * 20 18 17 23 23 N 1.31514 * 120.00056 * 359.97438 * 22 20 18 24 24 Si 1.86799 * 120.00248 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47056 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47253 * 119.99841 * 24 22 20 27 27 H 1.48495 * 109.47433 * 239.99969 * 24 22 20 28 28 C 1.47023 * 125.64775 * 179.97438 * 15 13 11 29 29 H 1.08999 * 109.46791 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46863 * 299.99634 * 1 2 3 31 31 H 1.09002 * 109.46558 * 59.99718 * 1 2 3 32 32 H 1.09004 * 109.47128 * 240.00594 * 2 1 3 33 33 H 1.09002 * 109.47542 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47528 * 300.00430 * 3 2 1 35 35 H 1.09004 * 109.46516 * 60.00220 * 3 2 1 36 36 H 0.97000 * 119.99780 * 264.99602 * 4 2 1 37 37 H 1.09000 * 109.88050 * 59.56043 * 8 7 5 38 38 H 1.09002 * 110.01364 * 298.46931 * 8 7 5 39 39 H 1.08991 * 110.72192 * 219.44948 * 9 8 7 40 40 H 1.08998 * 110.71770 * 96.16742 * 9 8 7 41 41 H 1.09004 * 111.00237 * 277.42345 * 10 9 8 42 42 H 1.08999 * 110.99990 * 153.57750 * 10 9 8 43 43 H 1.09003 * 110.37061 * 322.99857 * 16 15 13 44 44 H 1.08994 * 110.37044 * 85.22160 * 16 15 13 45 45 H 1.09006 * 111.19119 * 204.98499 * 17 16 15 46 46 H 1.08997 * 111.02739 * 80.97988 * 17 16 15 47 47 H 0.96696 * 114.00036 * 296.15508 * 19 18 17 48 48 H 0.97001 * 120.00180 * 180.02562 * 23 22 20 49 49 H 1.09006 * 109.88369 * 59.48864 * 28 15 13 50 50 H 1.09002 * 109.88440 * 298.32675 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -2.0323 1.1942 6 8 1.8575 -2.6694 0.2000 7 7 2.5959 -2.6678 2.2948 8 6 2.9800 -2.0237 3.5593 9 6 3.4027 -3.1432 4.5338 10 6 2.6954 -4.3956 3.9521 11 6 2.7843 -4.1237 2.4295 12 1 3.7618 -4.4184 2.0477 13 6 1.6927 -4.8635 1.7000 14 8 0.6874 -4.2777 1.3575 15 7 1.8334 -6.1761 1.4283 16 6 2.9978 -7.0071 1.7845 17 6 2.9768 -8.1805 0.7660 18 6 1.4528 -8.4335 0.6223 19 8 0.9759 -9.2644 1.6826 20 6 1.1384 -9.0485 -0.7171 21 1 0.5292 -8.5108 -1.4285 22 6 1.6284 -10.2976 -1.0343 23 7 2.3707 -10.9521 -0.1681 24 14 1.2381 -11.0603 -2.6942 25 1 0.3916 -10.1275 -3.4808 26 1 2.5021 -11.3202 -3.4290 27 1 0.5109 -12.3392 -2.4926 28 6 0.8513 -7.0162 0.7273 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 2.2491 -0.1824 1.9894 37 1 2.1313 -1.4763 3.9692 38 1 3.8146 -1.3427 3.3926 39 1 3.0458 -2.9321 5.5418 40 1 4.4849 -3.2730 4.5259 41 1 1.6572 -4.4458 4.2804 42 1 3.2321 -5.3063 4.2182 43 1 3.9189 -6.4333 1.6824 44 1 2.8975 -7.3845 2.8021 45 1 3.4825 -9.0591 1.1667 46 1 3.4144 -7.8800 -0.1859 47 1 1.3527 -10.1550 1.6842 48 1 2.7158 -11.8308 -0.3913 49 1 0.6669 -6.6171 -0.2701 50 1 -0.0795 -7.0492 1.2935 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:57 Heat of formation + Delta-G solvation = -128.561764 kcal Electronic energy + Delta-G solvation = -31505.199525 eV Core-core repulsion = 27338.547977 eV Total energy + Delta-G solvation = -4166.651548 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.86871 -40.56413 -39.13999 -38.18924 -36.81291 -36.06753 -34.20238 -33.40253 -31.75785 -31.38552 -30.47453 -29.67731 -28.11414 -27.04393 -25.15541 -24.02912 -22.50060 -22.45054 -21.59793 -21.12632 -20.27003 -19.28397 -18.90755 -18.38517 -17.30290 -16.97269 -16.80865 -16.66949 -16.19816 -16.00153 -15.90380 -15.54744 -15.03153 -14.81422 -14.74180 -14.49577 -14.28489 -13.93811 -13.89887 -13.74526 -13.45849 -13.26156 -13.23651 -13.14331 -13.08808 -13.00584 -12.71120 -12.68130 -12.42812 -12.30847 -12.30401 -12.21678 -12.00729 -11.92296 -11.71005 -11.31328 -11.17431 -10.81008 -10.63722 -10.16562 -10.14205 -9.58486 -9.50100 -8.28112 -6.41732 1.37026 1.40599 1.43620 1.51750 1.74154 2.03821 2.31278 2.38562 2.96763 3.06875 3.42638 3.56181 3.70370 3.87014 3.93108 3.95944 4.04442 4.14685 4.16580 4.27723 4.30568 4.40681 4.45889 4.54826 4.63723 4.69006 4.72365 4.72842 4.82952 4.87168 4.90394 4.91409 4.99537 5.08676 5.16088 5.19687 5.22861 5.26647 5.31207 5.35679 5.46119 5.50493 5.64970 5.73775 6.02664 6.05824 6.58157 6.67710 7.05760 7.24025 7.28829 7.41484 7.69801 8.78412 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.003095 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.675923 B = 9043.497465 C =10332.481931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 C -0.144 4.144 4 N -0.726 5.726 5 C 0.710 3.290 6 O -0.619 6.619 7 N -0.630 5.630 8 C 0.092 3.908 9 C -0.111 4.111 10 C -0.118 4.118 11 C 0.142 3.858 12 H 0.106 0.894 13 C 0.510 3.490 14 O -0.567 6.567 15 N -0.614 5.614 16 C 0.105 3.895 17 C -0.126 4.126 18 C 0.240 3.760 19 O -0.590 6.590 20 C -0.567 4.567 21 H 0.042 0.958 22 C 0.040 3.960 23 N -0.902 5.902 24 Si 0.958 3.042 25 H -0.282 1.282 26 H -0.272 1.272 27 H -0.273 1.273 28 C 0.136 3.864 29 H 0.015 0.985 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.408 0.592 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.050 0.950 47 H 0.382 0.618 48 H 0.274 0.726 49 H 0.039 0.961 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.665 21.493 12.187 26.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 C -0.202 4.202 4 N -0.384 5.384 5 C 0.412 3.588 6 O -0.497 6.497 7 N -0.369 5.369 8 C -0.029 4.029 9 C -0.148 4.148 10 C -0.156 4.156 11 C 0.034 3.966 12 H 0.124 0.876 13 C 0.299 3.701 14 O -0.445 6.445 15 N -0.348 5.348 16 C -0.016 4.016 17 C -0.165 4.165 18 C 0.200 3.800 19 O -0.400 6.400 20 C -0.605 4.605 21 H 0.060 0.940 22 C -0.162 4.162 23 N -0.541 5.541 24 Si 0.784 3.216 25 H -0.207 1.207 26 H -0.197 1.197 27 H -0.199 1.199 28 C 0.012 3.988 29 H 0.034 0.966 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.245 0.755 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.113 0.887 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.069 0.931 47 H 0.232 0.768 48 H 0.083 0.917 49 H 0.057 0.943 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.642 21.887 11.396 25.833 hybrid contribution -0.472 -1.296 -1.339 1.922 sum 7.171 20.592 10.057 24.012 Atomic orbital electron populations 1.22149 0.96032 1.00288 1.03182 1.20851 0.93624 0.94071 0.86821 1.21981 1.01879 0.91997 1.04318 1.45041 1.71540 1.03764 1.18056 1.15764 0.77870 0.82689 0.82486 1.90973 1.57156 1.66497 1.35109 1.47448 1.69857 1.05872 1.13705 1.22366 1.00987 0.97126 0.82398 1.22655 1.02272 0.90772 0.99134 1.22812 1.02493 1.01893 0.88436 1.21779 0.95945 0.80512 0.98398 0.87642 1.21033 0.89121 0.80282 0.79656 1.90665 1.33053 1.66931 1.53812 1.48606 1.20872 1.08298 1.57068 1.22634 0.87772 0.91861 0.99383 1.23154 0.98586 0.97200 0.97511 1.19503 0.90040 0.85039 0.85467 1.86095 1.72301 1.28809 1.52763 1.21740 1.33867 1.03655 1.01225 0.93950 1.25544 0.93490 0.96612 1.00514 1.69678 1.34044 1.14252 1.36155 0.85512 0.78216 0.78130 0.79755 1.20721 1.19712 1.19859 1.21641 0.91744 0.90835 0.94552 0.96597 0.91092 0.90155 0.92802 0.91420 0.89700 0.90252 0.75489 0.90829 0.88569 0.86992 0.87625 0.91849 0.86732 0.88701 0.89807 0.89650 0.93108 0.76750 0.91657 0.94252 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 9.48 71.98 0.68 -3.09 16 2 C 0.15 3.40 3.18 44.99 0.14 3.54 16 3 C -0.14 -1.73 9.38 71.98 0.68 -1.06 16 4 N -0.73 -17.10 5.04 -457.81 -2.31 -19.41 16 5 C 0.71 24.12 7.70 179.05 1.38 25.50 16 6 O -0.62 -29.05 13.38 19.03 0.25 -28.80 16 7 N -0.63 -17.04 3.14 -810.10 -2.55 -19.58 16 8 C 0.09 1.28 6.15 86.73 0.53 1.81 16 9 C -0.11 -1.10 6.95 31.78 0.22 -0.87 16 10 C -0.12 -2.24 6.49 31.99 0.21 -2.03 16 11 C 0.14 4.08 2.91 44.73 0.13 4.21 16 12 H 0.11 2.74 7.06 -2.39 -0.02 2.72 16 13 C 0.51 21.59 6.27 87.66 0.55 22.14 16 14 O -0.57 -29.44 14.09 19.98 0.28 -29.16 16 15 N -0.61 -26.55 3.33 -810.83 -2.70 -29.25 16 16 C 0.11 3.74 6.70 87.03 0.58 4.32 16 17 C -0.13 -5.59 5.61 32.15 0.18 -5.41 16 18 C 0.24 12.36 0.85 -10.35 -0.01 12.35 16 19 O -0.59 -30.78 13.07 -148.98 -1.95 -32.73 16 20 C -0.57 -32.04 8.21 25.60 0.21 -31.83 16 21 H 0.04 2.51 7.55 -2.91 -0.02 2.48 16 22 C 0.04 2.13 5.28 84.65 0.45 2.58 16 23 N -0.90 -46.71 10.67 21.45 0.23 -46.48 16 24 Si 0.96 43.18 29.54 68.60 2.03 45.21 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 28 C 0.14 6.99 6.22 86.73 0.54 7.53 16 29 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.57 7.58 -2.39 -0.02 1.55 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.41 6.26 7.59 -92.71 -0.70 5.56 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 1.46 8.05 -2.39 -0.02 1.44 16 42 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.09 2.68 7.00 -2.39 -0.02 2.66 16 44 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.08 3.80 7.64 -2.38 -0.02 3.78 16 46 H 0.05 2.38 8.04 -2.39 -0.02 2.36 16 47 H 0.38 19.70 7.23 -74.06 -0.54 19.17 16 48 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 49 H 0.04 2.21 7.65 -2.38 -0.02 2.19 16 50 H 0.04 2.03 8.07 -2.39 -0.02 2.01 16 Total: -1.00 -83.31 394.42 -0.52 -83.83 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.29 Total: 36.68 kcal Atomic # 6 Polarization: 33.21 SS G_CDS: 6.47 Total: 39.69 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -7.32 Total: -114.72 kcal Atomic # 8 Polarization: -89.27 SS G_CDS: -1.41 Total: -90.68 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -83.31 -0.52 -83.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.734 kcal (2) G-P(sol) polarization free energy of solvation -83.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds