Wall clock time and date at job start Sat Apr 11 2020 05:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47135 * 2 1 4 4 H 1.08995 * 109.82259 * 54.43243 * 3 2 1 5 5 O 1.43235 * 109.82747 * 293.54268 * 3 2 1 6 6 C 1.43645 * 109.97529 * 242.10684 * 5 3 2 7 7 C 1.54944 * 105.22260 * 335.52671 * 6 5 3 8 8 C 1.54383 * 109.90564 * 175.36972 * 3 2 1 9 9 H 1.09000 * 110.84920 * 22.71783 * 8 3 2 10 10 C 1.50703 * 110.84793 * 259.10125 * 8 3 2 11 11 O 1.21287 * 119.99508 * 0.02562 * 10 8 3 12 12 N 1.34777 * 120.00181 * 179.97438 * 10 8 3 13 13 C 1.46503 * 119.99675 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.46651 * 180.02562 * 13 12 10 15 15 H 1.08994 * 112.74437 * 284.22584 * 14 13 12 16 16 C 1.53514 * 113.47207 * 153.38125 * 14 13 12 17 17 C 1.53525 * 83.57262 * 219.20782 * 16 14 13 18 18 N 1.47479 * 113.47617 * 54.99922 * 14 13 12 19 19 C 1.46893 * 111.00389 * 253.46668 * 18 14 13 20 20 C 1.50692 * 109.47598 * 190.00338 * 19 18 14 21 21 O 1.21287 * 120.00138 * 359.97438 * 20 19 18 22 22 N 1.34777 * 120.00287 * 180.02562 * 20 19 18 23 23 C 1.37091 * 120.00588 * 179.97438 * 22 20 19 24 24 H 1.08008 * 119.99557 * 359.97438 * 23 22 20 25 25 C 1.38945 * 120.00605 * 179.97438 * 23 22 20 26 26 N 1.31411 * 119.99980 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00401 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47189 * 90.00021 * 27 25 23 29 29 H 1.48493 * 109.47690 * 210.00220 * 27 25 23 30 30 H 1.48504 * 109.46951 * 330.00242 * 27 25 23 31 31 H 1.08998 * 109.47387 * 60.00257 * 1 2 3 32 32 H 1.08997 * 109.47456 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47121 * 300.00184 * 1 2 3 34 34 H 1.08996 * 109.47150 * 239.99982 * 2 1 3 35 35 H 1.08998 * 109.47387 * 119.99743 * 2 1 3 36 36 H 1.09002 * 110.30923 * 94.49115 * 6 5 3 37 37 H 1.09000 * 110.31166 * 216.56243 * 6 5 3 38 38 H 1.08997 * 111.13230 * 154.41072 * 7 6 5 39 39 H 1.09003 * 111.12649 * 278.57419 * 7 6 5 40 40 H 0.96995 * 119.99831 * 0.02562 * 12 10 8 41 41 H 1.08994 * 109.47248 * 299.99684 * 13 12 10 42 42 H 1.09001 * 109.47271 * 60.00049 * 13 12 10 43 43 H 1.08999 * 114.17378 * 332.84993 * 16 14 13 44 44 H 1.09000 * 114.17051 * 105.56839 * 16 14 13 45 45 H 1.08995 * 113.47387 * 271.25614 * 17 16 14 46 46 H 1.08993 * 113.52761 * 140.80168 * 17 16 14 47 47 H 1.09005 * 109.46934 * 310.00879 * 19 18 14 48 48 H 1.09007 * 109.47054 * 69.99512 * 19 18 14 49 49 H 0.97005 * 119.99877 * 359.97438 * 22 20 19 50 50 H 0.97004 * 120.00383 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6008 1.9898 0.8341 5 8 1.6945 2.0800 -1.2353 6 6 2.8861 2.4654 -1.9387 7 6 3.9743 2.6122 -0.8455 8 6 3.5793 1.4558 0.1172 9 1 4.0022 0.5093 -0.2197 10 6 4.0070 1.7638 1.5290 11 8 3.1720 1.9594 2.3866 12 7 5.3175 1.8209 1.8389 13 6 5.7332 2.1198 3.2115 14 6 7.2611 2.1252 3.2918 15 1 7.6871 1.1220 3.2825 16 6 7.8112 3.0143 4.4159 17 6 8.8819 3.3710 3.3750 18 7 7.8969 3.0424 2.3277 19 6 8.5257 2.2979 1.2286 20 6 9.3675 3.2363 0.4031 21 8 9.4365 4.4101 0.7007 22 7 10.0430 2.7716 -0.6666 23 6 10.8084 3.6254 -1.4180 24 1 10.8698 4.6706 -1.1530 25 6 11.5052 3.1462 -2.5205 26 7 11.4301 1.8745 -2.8433 27 14 12.5475 4.3097 -3.5447 28 1 13.9285 4.3468 -3.0000 29 1 12.5829 3.8348 -4.9512 30 1 11.9599 5.6727 -3.4971 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.1699 1.6931 -2.6537 37 1 2.7330 3.4157 -2.4501 38 1 4.9707 2.4579 -1.2596 39 1 3.9033 3.5794 -0.3479 40 1 5.9852 1.6642 1.1531 41 1 5.3511 3.0984 3.5020 42 1 5.3362 1.3602 3.8850 43 1 7.1593 3.8444 4.6879 44 1 8.1911 2.4626 5.2758 45 1 9.7411 2.7005 3.3887 46 1 9.1678 4.4227 3.3878 47 1 9.1565 1.5090 1.6384 48 1 7.7525 1.8553 0.6005 49 1 9.9876 1.8329 -0.9049 50 1 11.9168 1.5398 -3.6127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733222141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:09 Heat of formation + Delta-G solvation = -89.614333 kcal Electronic energy + Delta-G solvation = -30347.972057 eV Core-core repulsion = 26183.009397 eV Total energy + Delta-G solvation = -4164.962660 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.81298 -40.22857 -38.58392 -37.81205 -34.68612 -33.99844 -33.64064 -32.57334 -31.47056 -30.73029 -28.88218 -28.11630 -25.90611 -24.38828 -23.83193 -23.19886 -22.37775 -20.96367 -20.33155 -19.65553 -19.36146 -18.00018 -17.92407 -16.78400 -16.26526 -16.11357 -15.94656 -15.52280 -15.16479 -14.93376 -14.69433 -14.49725 -14.27888 -14.08078 -13.90261 -13.72533 -13.54305 -13.30973 -12.99680 -12.82851 -12.44874 -12.32840 -12.01014 -11.94889 -11.73229 -11.58471 -11.54511 -11.45043 -11.20816 -11.13657 -10.98940 -10.93282 -10.88859 -10.58359 -10.45557 -10.29447 -9.91347 -9.58882 -9.58325 -9.13625 -8.85855 -8.36055 -8.05510 -6.50204 -3.91209 2.49086 2.97810 3.11632 3.21358 3.26849 3.61964 3.77226 3.89386 4.13864 4.21371 4.37425 4.45658 4.53284 4.68580 4.85404 4.88121 4.92028 4.95546 5.00824 5.03038 5.13890 5.21015 5.26238 5.30678 5.32947 5.40208 5.55266 5.56392 5.60423 5.64405 5.66945 5.73238 5.74529 5.80144 5.81121 5.83338 5.97861 6.09010 6.12489 6.15246 6.17991 6.32836 6.49393 6.86681 7.09661 7.37714 7.47254 7.96494 8.08675 8.51677 9.09481 9.44031 9.95477 10.67330 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009871 B = 0.003000 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.043966 B = 9332.559242 C =11562.075710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.095 3.905 4 H 0.101 0.899 5 O -0.375 6.375 6 C 0.052 3.948 7 C -0.146 4.146 8 C -0.145 4.145 9 H 0.111 0.889 10 C 0.526 3.474 11 O -0.542 6.542 12 N -0.717 5.717 13 C 0.141 3.859 14 C 0.003 3.997 15 H 0.082 0.918 16 C -0.136 4.136 17 C 0.013 3.987 18 N -0.436 5.436 19 C 0.008 3.992 20 C 0.443 3.557 21 O -0.576 6.576 22 N -0.563 5.563 23 C -0.299 4.299 24 H 0.103 0.897 25 C 0.024 3.976 26 N -0.901 5.901 27 Si 0.929 3.071 28 H -0.278 1.278 29 H -0.283 1.283 30 H -0.269 1.269 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.402 0.598 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.057 0.943 48 H 0.082 0.918 49 H 0.391 0.609 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.673 -6.659 7.795 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.037 3.963 4 H 0.118 0.882 5 O -0.295 6.295 6 C -0.024 4.024 7 C -0.184 4.184 8 C -0.167 4.167 9 H 0.129 0.871 10 C 0.312 3.688 11 O -0.419 6.419 12 N -0.369 5.369 13 C 0.017 3.983 14 C -0.107 4.107 15 H 0.100 0.900 16 C -0.174 4.174 17 C -0.115 4.115 18 N -0.159 5.159 19 C -0.124 4.124 20 C 0.228 3.772 21 O -0.459 6.459 22 N -0.200 5.200 23 C -0.429 4.429 24 H 0.121 0.879 25 C -0.178 4.178 26 N -0.543 5.543 27 Si 0.756 3.244 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.237 0.763 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.112 0.888 47 H 0.075 0.925 48 H 0.100 0.900 49 H 0.224 0.776 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.712 -5.271 8.011 17.561 hybrid contribution 1.844 -1.045 -0.875 2.293 sum -12.868 -6.317 7.136 16.012 Atomic orbital electron populations 1.21673 0.95090 1.01284 1.02350 1.21878 0.97250 0.95570 1.02186 1.22703 0.91316 0.94310 0.87986 0.88174 1.88436 1.29573 1.78282 1.33194 1.23364 0.84122 1.00613 0.94324 1.23326 1.00870 0.98308 0.95879 1.22975 0.98256 1.01637 0.93797 0.87148 1.20124 0.82464 0.76512 0.89690 1.90687 1.51405 1.49858 1.49956 1.45944 1.07039 1.71658 1.12230 1.21342 0.92538 1.01655 0.82791 1.23816 0.94848 0.97111 0.94955 0.89971 1.23199 0.98731 0.99489 0.95954 1.23585 0.94240 1.03719 0.90001 1.68879 1.18258 1.25967 1.02749 1.22539 0.98131 0.96094 0.95621 1.19578 0.84772 0.88980 0.83915 1.90540 1.66770 1.17203 1.71399 1.41865 1.41949 1.11622 1.24545 1.19685 1.22667 0.93724 1.06807 0.87933 1.25253 0.98311 0.96520 0.97738 1.69602 1.43046 1.13209 1.28397 0.85867 0.79812 0.80129 0.78572 1.20387 1.20864 1.19369 0.92054 0.92982 0.92701 0.91630 0.91086 0.91830 0.89269 0.88655 0.89563 0.76263 0.90710 0.91219 0.88610 0.90471 0.91545 0.88842 0.92501 0.90028 0.77571 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.82 37.15 0.36 -1.00 16 2 C -0.13 -1.29 5.51 -26.73 -0.15 -1.43 16 3 C 0.09 1.08 2.97 -26.00 -0.08 1.01 16 4 H 0.10 1.34 6.78 -51.93 -0.35 0.99 16 5 O -0.38 -4.57 10.63 -35.23 -0.37 -4.94 16 6 C 0.05 0.53 7.77 38.18 0.30 0.83 16 7 C -0.15 -1.53 6.62 -24.34 -0.16 -1.69 16 8 C -0.15 -1.53 2.92 -89.68 -0.26 -1.80 16 9 H 0.11 0.97 7.85 -51.93 -0.41 0.56 16 10 C 0.53 6.65 7.14 -10.98 -0.08 6.57 16 11 O -0.54 -8.46 15.42 5.55 0.09 -8.38 16 12 N -0.72 -8.29 5.46 -60.29 -0.33 -8.62 16 13 C 0.14 1.58 5.82 -4.04 -0.02 1.56 16 14 C 0.00 0.03 3.25 -71.43 -0.23 -0.20 16 15 H 0.08 0.80 7.77 -51.93 -0.40 0.40 16 16 C -0.14 -1.39 8.00 -26.19 -0.21 -1.60 16 17 C 0.01 0.19 6.71 -7.53 -0.05 0.13 16 18 N -0.44 -6.45 5.63 -237.92 -1.34 -7.79 16 19 C 0.01 0.13 5.07 -4.98 -0.03 0.11 16 20 C 0.44 9.80 7.62 -10.99 -0.08 9.72 16 21 O -0.58 -14.95 15.34 5.55 0.09 -14.86 16 22 N -0.56 -13.49 5.29 -10.97 -0.06 -13.54 16 23 C -0.30 -8.03 9.68 -14.94 -0.14 -8.17 16 24 H 0.10 2.91 7.16 -52.48 -0.38 2.54 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -23.60 13.05 55.50 0.72 -22.88 16 27 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 29 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 30 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 31 H 0.06 0.60 7.88 -51.93 -0.41 0.19 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 1.01 8.04 -51.93 -0.42 0.59 16 40 H 0.40 4.39 6.22 -40.82 -0.25 4.14 16 41 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 0.97 7.94 -51.93 -0.41 0.56 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.90 7.70 -51.93 -0.40 0.50 16 46 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 47 H 0.06 0.81 7.56 -51.93 -0.39 0.41 16 48 H 0.08 1.12 6.33 -51.92 -0.33 0.79 16 49 H 0.39 8.90 7.90 -40.82 -0.32 8.58 16 50 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 402.81 15.07 6.07 6.07 Total: -1.00 -32.19 402.81 -9.34 -41.52 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -8.25 Total: 13.45 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -0.93 Total: 4.53 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -1.00 Total: -52.82 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.20 Total: -28.18 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.19 -9.34 -41.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733222141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.090 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds