Wall clock time and date at job start Sat Apr 11 2020 05:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47135 * 2 1 4 4 H 1.08995 * 109.82259 * 54.43243 * 3 2 1 5 5 O 1.43235 * 109.82747 * 293.54268 * 3 2 1 6 6 C 1.43645 * 109.97529 * 242.10684 * 5 3 2 7 7 C 1.54944 * 105.22260 * 335.52671 * 6 5 3 8 8 C 1.54383 * 109.90564 * 175.36972 * 3 2 1 9 9 H 1.09000 * 110.84920 * 22.71783 * 8 3 2 10 10 C 1.50703 * 110.84793 * 259.10125 * 8 3 2 11 11 O 1.21287 * 119.99508 * 0.02562 * 10 8 3 12 12 N 1.34777 * 120.00181 * 179.97438 * 10 8 3 13 13 C 1.46503 * 119.99675 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.46651 * 180.02562 * 13 12 10 15 15 H 1.08994 * 112.74437 * 284.22584 * 14 13 12 16 16 C 1.53514 * 113.47207 * 153.38125 * 14 13 12 17 17 C 1.53525 * 83.57262 * 219.20782 * 16 14 13 18 18 N 1.47479 * 113.47617 * 54.99922 * 14 13 12 19 19 C 1.46893 * 111.00389 * 253.46668 * 18 14 13 20 20 C 1.50692 * 109.47598 * 190.00338 * 19 18 14 21 21 O 1.21287 * 120.00138 * 359.97438 * 20 19 18 22 22 N 1.34777 * 120.00287 * 180.02562 * 20 19 18 23 23 C 1.37091 * 120.00588 * 179.97438 * 22 20 19 24 24 H 1.08008 * 119.99557 * 359.97438 * 23 22 20 25 25 C 1.38945 * 120.00605 * 179.97438 * 23 22 20 26 26 N 1.31411 * 119.99980 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00401 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47189 * 90.00021 * 27 25 23 29 29 H 1.48493 * 109.47690 * 210.00220 * 27 25 23 30 30 H 1.48504 * 109.46951 * 330.00242 * 27 25 23 31 31 H 1.08998 * 109.47387 * 60.00257 * 1 2 3 32 32 H 1.08997 * 109.47456 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47121 * 300.00184 * 1 2 3 34 34 H 1.08996 * 109.47150 * 239.99982 * 2 1 3 35 35 H 1.08998 * 109.47387 * 119.99743 * 2 1 3 36 36 H 1.09002 * 110.30923 * 94.49115 * 6 5 3 37 37 H 1.09000 * 110.31166 * 216.56243 * 6 5 3 38 38 H 1.08997 * 111.13230 * 154.41072 * 7 6 5 39 39 H 1.09003 * 111.12649 * 278.57419 * 7 6 5 40 40 H 0.96995 * 119.99831 * 0.02562 * 12 10 8 41 41 H 1.08994 * 109.47248 * 299.99684 * 13 12 10 42 42 H 1.09001 * 109.47271 * 60.00049 * 13 12 10 43 43 H 1.08999 * 114.17378 * 332.84993 * 16 14 13 44 44 H 1.09000 * 114.17051 * 105.56839 * 16 14 13 45 45 H 1.08995 * 113.47387 * 271.25614 * 17 16 14 46 46 H 1.08993 * 113.52761 * 140.80168 * 17 16 14 47 47 H 1.09005 * 109.46934 * 310.00879 * 19 18 14 48 48 H 1.09007 * 109.47054 * 69.99512 * 19 18 14 49 49 H 0.97005 * 119.99877 * 359.97438 * 22 20 19 50 50 H 0.97004 * 120.00383 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6008 1.9898 0.8341 5 8 1.6945 2.0800 -1.2353 6 6 2.8861 2.4654 -1.9387 7 6 3.9743 2.6122 -0.8455 8 6 3.5793 1.4558 0.1172 9 1 4.0022 0.5093 -0.2197 10 6 4.0070 1.7638 1.5290 11 8 3.1720 1.9594 2.3866 12 7 5.3175 1.8209 1.8389 13 6 5.7332 2.1198 3.2115 14 6 7.2611 2.1252 3.2918 15 1 7.6871 1.1220 3.2825 16 6 7.8112 3.0143 4.4159 17 6 8.8819 3.3710 3.3750 18 7 7.8969 3.0424 2.3277 19 6 8.5257 2.2979 1.2286 20 6 9.3675 3.2363 0.4031 21 8 9.4365 4.4101 0.7007 22 7 10.0430 2.7716 -0.6666 23 6 10.8084 3.6254 -1.4180 24 1 10.8698 4.6706 -1.1530 25 6 11.5052 3.1462 -2.5205 26 7 11.4301 1.8745 -2.8433 27 14 12.5475 4.3097 -3.5447 28 1 13.9285 4.3468 -3.0000 29 1 12.5829 3.8348 -4.9512 30 1 11.9599 5.6727 -3.4971 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.1699 1.6931 -2.6537 37 1 2.7330 3.4157 -2.4501 38 1 4.9707 2.4579 -1.2596 39 1 3.9033 3.5794 -0.3479 40 1 5.9852 1.6642 1.1531 41 1 5.3511 3.0984 3.5020 42 1 5.3362 1.3602 3.8850 43 1 7.1593 3.8444 4.6879 44 1 8.1911 2.4626 5.2758 45 1 9.7411 2.7005 3.3887 46 1 9.1678 4.4227 3.3878 47 1 9.1565 1.5090 1.6384 48 1 7.7525 1.8553 0.6005 49 1 9.9876 1.8329 -0.9049 50 1 11.9168 1.5398 -3.6127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733222141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:08 Heat of formation + Delta-G solvation = -114.736808 kcal Electronic energy + Delta-G solvation = -30349.061449 eV Core-core repulsion = 26183.009397 eV Total energy + Delta-G solvation = -4166.052052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81457 -41.26083 -39.72700 -39.37112 -35.98001 -35.63796 -34.43907 -33.47547 -33.31851 -32.03392 -29.78123 -29.01291 -27.54780 -25.36572 -25.25931 -24.08222 -23.28953 -21.80468 -21.29561 -21.08284 -20.57540 -19.91146 -18.84150 -17.85337 -17.55522 -17.23118 -17.01476 -16.61066 -16.51282 -16.20229 -16.02191 -15.59966 -15.54676 -15.27966 -15.06884 -14.86223 -14.65633 -14.17487 -14.07067 -13.87227 -13.82791 -13.53631 -13.25772 -13.07560 -12.91457 -12.78748 -12.73287 -12.44654 -12.37371 -12.34098 -12.14519 -12.02934 -11.92496 -11.78538 -11.74067 -11.61686 -11.48584 -10.90854 -10.46570 -10.34240 -10.10664 -10.01029 -9.76669 -8.47098 -5.94949 1.36737 1.41806 1.51076 1.53242 2.02698 2.07715 2.28030 2.76714 2.82784 3.19224 3.26422 3.36743 3.55774 3.62565 3.63805 3.78905 4.00678 4.07689 4.14133 4.16811 4.20597 4.22404 4.26590 4.35471 4.41524 4.43601 4.49865 4.52443 4.66075 4.77568 4.79687 4.84771 4.86350 4.89493 4.97280 4.99998 5.00704 5.08012 5.19480 5.28054 5.31876 5.39691 5.41346 5.47434 5.92204 6.02073 6.09784 6.43720 6.60508 7.13055 7.13552 7.56446 8.12818 8.69948 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009871 B = 0.003000 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.043966 B = 9332.559242 C =11562.075710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.094 3.906 4 H 0.074 0.926 5 O -0.392 6.392 6 C 0.049 3.951 7 C -0.144 4.144 8 C -0.139 4.139 9 H 0.136 0.864 10 C 0.525 3.475 11 O -0.576 6.576 12 N -0.711 5.711 13 C 0.141 3.859 14 C 0.016 3.984 15 H 0.108 0.892 16 C -0.116 4.116 17 C 0.003 3.997 18 N -0.465 5.465 19 C 0.021 3.979 20 C 0.441 3.559 21 O -0.619 6.619 22 N -0.572 5.572 23 C -0.330 4.330 24 H 0.075 0.925 25 C -0.009 4.009 26 N -0.917 5.917 27 Si 0.987 3.013 28 H -0.272 1.272 29 H -0.271 1.271 30 H -0.275 1.275 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.406 0.594 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.083 0.917 48 H 0.107 0.893 49 H 0.397 0.603 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.520 -8.686 7.792 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.036 3.964 4 H 0.092 0.908 5 O -0.312 6.312 6 C -0.027 4.027 7 C -0.182 4.182 8 C -0.160 4.160 9 H 0.154 0.846 10 C 0.311 3.689 11 O -0.456 6.456 12 N -0.362 5.362 13 C 0.017 3.983 14 C -0.093 4.093 15 H 0.126 0.874 16 C -0.154 4.154 17 C -0.126 4.126 18 N -0.188 5.188 19 C -0.111 4.111 20 C 0.229 3.771 21 O -0.505 6.505 22 N -0.210 5.210 23 C -0.460 4.460 24 H 0.093 0.907 25 C -0.209 4.209 26 N -0.558 5.558 27 Si 0.811 3.189 28 H -0.198 1.198 29 H -0.195 1.195 30 H -0.200 1.200 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.086 0.914 40 H 0.243 0.757 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.127 0.873 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.100 0.900 48 H 0.125 0.875 49 H 0.231 0.769 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.548 -7.325 8.008 18.151 hybrid contribution 1.770 -0.354 -0.824 1.984 sum -12.779 -7.679 7.183 16.549 Atomic orbital electron populations 1.21664 0.94958 1.02085 1.01606 1.21865 0.97415 0.94400 1.02871 1.22647 0.91841 0.94920 0.87003 0.90816 1.88416 1.30733 1.78576 1.33481 1.23505 0.83324 1.01544 0.94282 1.23294 1.01565 0.97392 0.95920 1.22985 0.97738 1.02732 0.92518 0.84577 1.20444 0.82418 0.75847 0.90148 1.90675 1.52301 1.51490 1.51119 1.45931 1.06815 1.70926 1.12560 1.21368 0.92754 1.01262 0.82876 1.23840 0.94206 0.97752 0.93496 0.87408 1.23142 0.96760 0.99411 0.96090 1.23614 0.95345 1.01969 0.91639 1.68871 1.18810 1.27729 1.03374 1.22441 0.98165 0.94863 0.95596 1.20695 0.83865 0.89353 0.83234 1.90516 1.67967 1.19683 1.72319 1.41909 1.42366 1.11524 1.25156 1.19579 1.24749 0.93233 1.08449 0.90675 1.25926 0.98836 0.97998 0.98136 1.69648 1.43364 1.14032 1.28784 0.85017 0.78314 0.77986 0.77601 1.19776 1.19526 1.20024 0.92832 0.91384 0.93426 0.90449 0.90700 0.90084 0.88767 0.87668 0.91428 0.75735 0.92446 0.89727 0.88802 0.87324 0.91064 0.92111 0.89957 0.87492 0.76925 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.82 71.98 0.71 -1.88 16 2 C -0.13 -2.33 5.51 30.59 0.17 -2.16 16 3 C 0.09 2.10 2.97 31.06 0.09 2.19 16 4 H 0.07 2.04 6.78 -2.39 -0.02 2.02 16 5 O -0.39 -9.32 10.63 -148.98 -1.58 -10.91 16 6 C 0.05 0.94 7.77 72.65 0.56 1.51 16 7 C -0.14 -2.87 6.62 32.14 0.21 -2.66 16 8 C -0.14 -2.73 2.92 -10.19 -0.03 -2.76 16 9 H 0.14 1.99 7.85 -2.39 -0.02 1.97 16 10 C 0.52 12.71 7.14 87.66 0.63 13.33 16 11 O -0.58 -17.90 15.42 -3.05 -0.05 -17.95 16 12 N -0.71 -15.09 5.46 -463.04 -2.53 -17.62 16 13 C 0.14 2.87 5.82 86.38 0.50 3.38 16 14 C 0.02 0.31 3.25 42.19 0.14 0.45 16 15 H 0.11 1.59 7.77 -2.39 -0.02 1.57 16 16 C -0.12 -2.09 8.00 30.94 0.25 -1.85 16 17 C 0.00 0.09 6.71 83.58 0.56 0.65 16 18 N -0.46 -13.07 5.63 -906.65 -5.10 -18.17 16 19 C 0.02 0.63 5.07 85.56 0.43 1.06 16 20 C 0.44 19.56 7.62 87.65 0.67 20.23 16 21 O -0.62 -33.01 15.34 -3.05 -0.05 -33.06 16 22 N -0.57 -27.52 5.29 -307.00 -1.62 -29.14 16 23 C -0.33 -18.04 9.68 84.04 0.81 -17.23 16 24 H 0.08 4.44 7.16 -2.91 -0.02 4.42 16 25 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 26 N -0.92 -47.31 13.05 21.66 0.28 -47.03 16 27 Si 0.99 41.71 29.55 68.60 2.03 43.74 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 29 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 30 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 31 H 0.05 1.02 7.88 -2.39 -0.02 1.00 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 1.59 8.04 -2.39 -0.02 1.57 16 40 H 0.41 7.84 6.22 -92.71 -0.58 7.27 16 41 H 0.06 1.39 7.87 -2.39 -0.02 1.37 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 1.76 7.94 -2.39 -0.02 1.74 16 44 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.07 1.82 7.70 -2.39 -0.02 1.80 16 46 H 0.06 2.00 8.13 -2.39 -0.02 1.98 16 47 H 0.08 2.06 7.56 -2.38 -0.02 2.05 16 48 H 0.11 2.63 6.33 -2.38 -0.02 2.61 16 49 H 0.40 17.87 7.90 -92.70 -0.73 17.14 16 50 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -71.69 402.81 -2.81 -74.50 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: -0.35 Total: 41.38 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 6.17 Total: 14.27 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -8.97 Total: -111.96 kcal Atomic # 8 Polarization: -60.24 SS G_CDS: -1.68 Total: -61.92 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -71.69 -2.81 -74.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733222141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.238 kcal (2) G-P(sol) polarization free energy of solvation -71.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds