Wall clock time and date at job start Sat Apr 11 2020 05:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46974 * 2 1 4 4 H 1.09003 * 110.35217 * 304.31106 * 3 2 1 5 5 C 1.54947 * 110.31054 * 182.16810 * 3 2 1 6 6 C 1.55458 * 100.99063 * 204.69355 * 5 3 2 7 7 C 1.54383 * 102.18590 * 34.03344 * 6 5 3 8 8 H 1.09003 * 109.82559 * 98.30211 * 7 6 5 9 9 C 1.50694 * 109.83236 * 219.18387 * 7 6 5 10 10 O 1.21282 * 120.00130 * 106.87295 * 9 7 6 11 11 N 1.34777 * 120.00281 * 286.86910 * 9 7 6 12 12 C 1.46501 * 120.00241 * 184.64742 * 11 9 7 13 13 C 1.46497 * 119.99672 * 4.65449 * 11 9 7 14 14 C 1.53513 * 114.17043 * 239.99686 * 13 11 9 15 15 N 1.47486 * 87.93132 * 220.33114 * 14 13 11 16 16 C 1.46896 * 110.99783 * 138.70311 * 15 14 13 17 17 C 1.50706 * 109.47166 * 169.99748 * 16 15 14 18 18 O 1.21299 * 119.99579 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00083 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99568 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00030 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99667 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00326 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00030 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47288 * 180.02562 * 24 22 20 26 26 H 1.48507 * 109.46849 * 300.00023 * 24 22 20 27 27 H 1.48498 * 109.47451 * 59.99798 * 24 22 20 28 28 C 1.47479 * 87.83630 * 27.00868 * 15 14 13 29 29 O 1.43235 * 107.66502 * 338.74494 * 7 6 5 30 30 H 1.09002 * 109.46888 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47281 * 299.99798 * 1 2 3 32 32 H 1.09002 * 109.47029 * 60.00287 * 1 2 3 33 33 H 1.08997 * 109.47281 * 240.00202 * 2 1 3 34 34 H 1.09000 * 109.47549 * 119.99701 * 2 1 3 35 35 H 1.08999 * 111.12560 * 322.55566 * 5 3 2 36 36 H 1.08995 * 111.13082 * 86.67750 * 5 3 2 37 37 H 1.09005 * 110.82961 * 275.89290 * 6 5 3 38 38 H 1.08993 * 110.92758 * 152.22353 * 6 5 3 39 39 H 1.09000 * 109.47301 * 269.18489 * 12 11 9 40 40 H 1.09001 * 109.46744 * 29.18406 * 12 11 9 41 41 H 1.08996 * 109.46904 * 149.18076 * 12 11 9 42 42 H 1.09000 * 113.25976 * 12.95123 * 13 11 9 43 43 H 1.08993 * 113.47730 * 105.55947 * 14 13 11 44 44 H 1.09003 * 113.47480 * 335.09212 * 14 13 11 45 45 H 1.08996 * 109.47348 * 50.00018 * 16 15 14 46 46 H 1.08998 * 109.47441 * 289.99532 * 16 15 14 47 47 H 0.96993 * 119.99738 * 359.97438 * 19 17 16 48 48 H 0.97003 * 119.99562 * 0.02562 * 23 22 20 49 49 H 1.08999 * 113.47647 * 87.75827 * 28 15 14 50 50 H 1.08997 * 113.47317 * 218.22342 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6231 1.9920 -0.8441 5 6 3.5882 1.4656 -0.0550 6 6 3.8871 2.8482 0.5898 7 6 2.7559 2.9727 1.6330 8 1 3.1268 2.6843 2.6166 9 6 2.2513 4.3920 1.6731 10 8 1.1697 4.6648 1.1968 11 7 3.0016 5.3584 2.2384 12 6 2.4693 6.7170 2.3690 13 6 4.3497 5.0502 2.7220 14 6 4.5512 5.2998 4.2233 15 7 5.8825 5.8457 3.8994 16 6 6.1664 7.0475 4.6949 17 6 7.6131 7.4334 4.5233 18 8 8.3365 6.7719 3.8088 19 7 8.1030 8.5134 5.1635 20 6 9.4193 8.8640 5.0077 21 1 10.0634 8.2750 4.3716 22 6 9.9242 9.9778 5.6674 23 7 9.1402 10.6953 6.4402 24 14 11.7174 10.4560 5.4546 25 1 12.0043 11.6713 6.2583 26 1 12.5848 9.3422 5.9155 27 1 11.9888 10.7343 4.0214 28 6 5.3506 6.2044 2.5714 29 8 1.6987 2.0920 1.2350 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.0145 0.6566 0.5382 36 1 3.9455 1.4253 -1.0839 37 1 3.8201 3.6444 -0.1518 38 1 4.8634 2.8490 1.0743 39 1 2.7354 7.2980 1.4859 40 1 1.3841 6.6745 2.4625 41 1 2.8922 7.1892 3.2556 42 1 4.7210 4.0855 2.3762 43 1 4.5890 4.3849 4.8143 44 1 3.8667 6.0410 4.6359 45 1 5.9675 6.8424 5.7467 46 1 5.5298 7.8654 4.3575 47 1 7.5244 9.0425 5.7345 48 1 8.2089 10.4472 6.5504 49 1 4.8795 7.1869 2.5432 50 1 6.0661 6.0559 1.7626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733308535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:20 Heat of formation + Delta-G solvation = -70.029180 kcal Electronic energy + Delta-G solvation = -30011.037740 eV Core-core repulsion = 25846.924356 eV Total energy + Delta-G solvation = -4164.113384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28983 -40.15110 -38.68845 -37.92181 -35.06070 -34.24524 -34.00601 -32.58541 -31.22217 -30.08169 -29.65897 -27.08434 -26.11745 -25.49593 -24.26559 -23.63734 -22.30121 -21.42267 -20.53815 -19.75133 -19.18878 -18.13061 -17.90891 -17.05778 -16.65002 -16.37423 -16.15356 -15.73225 -15.34206 -14.98692 -14.59309 -14.47515 -14.35512 -13.87375 -13.75734 -13.68952 -13.51652 -13.35940 -13.22085 -12.96337 -12.82193 -12.62675 -12.34297 -12.19094 -12.14771 -11.88782 -11.77550 -11.48587 -11.25909 -11.21846 -11.15048 -11.05344 -10.94907 -10.83207 -10.48150 -10.22689 -9.88990 -9.56663 -9.53543 -9.01841 -8.91100 -8.34213 -8.06269 -6.77933 -3.91316 2.25946 2.51275 3.28753 3.32967 3.43295 3.53251 3.77830 3.81818 3.99026 4.12372 4.16023 4.24551 4.27529 4.48763 4.58404 4.66425 4.71090 4.77189 4.85405 4.97304 5.01234 5.03022 5.09127 5.16876 5.19548 5.26234 5.31759 5.37556 5.38490 5.42085 5.44574 5.49514 5.53176 5.59571 5.61945 5.64353 5.66564 5.83099 5.85137 5.95352 6.01236 6.12732 6.29080 6.59192 6.90347 7.06407 7.77224 7.89595 8.05188 8.57112 8.77469 9.44508 9.85344 10.65421 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027792 B = 0.001956 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.231865 B =14309.889866 C =14890.285672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.077 3.923 4 H 0.073 0.927 5 C -0.150 4.150 6 C -0.148 4.148 7 C 0.066 3.934 8 H 0.107 0.893 9 C 0.505 3.495 10 O -0.523 6.523 11 N -0.602 5.602 12 C 0.082 3.918 13 C 0.101 3.899 14 C -0.021 4.021 15 N -0.433 5.433 16 C 0.011 3.989 17 C 0.448 3.552 18 O -0.568 6.568 19 N -0.578 5.578 20 C -0.382 4.382 21 H 0.099 0.901 22 C -0.010 4.010 23 N -0.901 5.901 24 Si 1.091 2.909 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.284 1.284 28 C -0.004 4.004 29 O -0.346 6.346 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.130 0.870 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.059 0.941 47 H 0.375 0.625 48 H 0.260 0.740 49 H 0.075 0.925 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.681 -16.452 -9.934 24.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C 0.019 3.981 4 H 0.091 0.909 5 C -0.188 4.188 6 C -0.186 4.186 7 C 0.005 3.995 8 H 0.124 0.876 9 C 0.292 3.708 10 O -0.398 6.398 11 N -0.337 5.337 12 C -0.060 4.060 13 C -0.003 4.003 14 C -0.151 4.151 15 N -0.155 5.155 16 C -0.121 4.121 17 C 0.233 3.767 18 O -0.451 6.451 19 N -0.216 5.216 20 C -0.511 4.511 21 H 0.117 0.883 22 C -0.212 4.212 23 N -0.540 5.540 24 Si 0.917 3.083 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.210 1.210 28 C -0.133 4.133 29 O -0.264 6.264 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.147 0.853 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.077 0.923 47 H 0.207 0.793 48 H 0.072 0.928 49 H 0.093 0.907 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.187 -16.055 -10.033 23.658 hybrid contribution -1.956 0.058 -0.024 1.957 sum -16.143 -15.996 -10.057 24.852 Atomic orbital electron populations 1.21717 0.95132 1.01411 1.02563 1.21653 0.97043 0.94360 1.02677 1.23138 0.93678 0.93796 0.87447 0.90934 1.23360 0.95798 0.97060 1.02531 1.23217 0.98537 0.98764 0.98104 1.22632 0.88292 0.88036 1.00559 0.87580 1.21041 0.84831 0.87319 0.77578 1.90701 1.21543 1.82836 1.44736 1.47819 1.15479 1.10176 1.60222 1.21644 1.00479 0.82183 1.01665 1.23089 0.81384 1.00870 0.94976 1.24433 0.91930 1.01884 0.96895 1.68783 1.22146 1.22385 1.02204 1.22497 0.97532 0.92544 0.99565 1.19536 0.88440 0.83419 0.85279 1.90532 1.59613 1.53501 1.41441 1.41942 1.11461 1.25249 1.42980 1.20523 0.86237 1.13611 1.30727 0.88334 1.26508 1.07793 0.92807 0.94088 1.70911 1.06950 1.39634 1.36535 0.83132 0.72104 0.76513 0.76541 1.20408 1.20986 1.21029 1.24327 0.96040 0.97237 0.95725 1.88515 1.40914 1.57208 1.39806 0.92824 0.91870 0.92826 0.90655 0.91099 0.89668 0.89375 0.89828 0.88383 0.92329 0.90308 0.91164 0.85254 0.88831 0.90851 0.89234 0.92295 0.79250 0.92824 0.90669 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.83 37.16 0.37 -0.76 16 2 C -0.12 -0.82 5.68 -26.73 -0.15 -0.98 16 3 C 0.08 0.65 3.43 -25.70 -0.09 0.56 16 4 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.15 -0.97 6.57 -24.40 -0.16 -1.13 16 6 C -0.15 -1.12 5.59 -24.70 -0.14 -1.26 16 7 C 0.07 0.65 3.05 -27.16 -0.08 0.56 16 8 H 0.11 0.88 7.62 -51.93 -0.40 0.48 16 9 C 0.51 6.16 6.87 -10.99 -0.08 6.08 16 10 O -0.52 -8.36 16.17 -13.85 -0.22 -8.58 16 11 N -0.60 -6.34 3.11 -173.62 -0.54 -6.88 16 12 C 0.08 0.81 9.06 59.85 0.54 1.35 16 13 C 0.10 1.02 4.08 -67.72 -0.28 0.74 16 14 C -0.02 -0.23 7.24 -7.54 -0.05 -0.28 16 15 N -0.43 -6.44 5.82 -246.09 -1.43 -7.88 16 16 C 0.01 0.18 5.30 -4.97 -0.03 0.15 16 17 C 0.45 10.33 7.85 -10.98 -0.09 10.25 16 18 O -0.57 -15.33 16.01 5.54 0.09 -15.24 16 19 N -0.58 -14.27 5.28 -10.96 -0.06 -14.33 16 20 C -0.38 -10.62 9.68 -14.93 -0.14 -10.76 16 21 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 22 C -0.01 -0.26 5.50 -17.47 -0.10 -0.36 16 23 N -0.90 -24.97 13.68 55.50 0.76 -24.21 16 24 Si 1.09 24.03 29.92 -169.99 -5.09 18.94 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 28 C 0.00 -0.04 7.13 -7.54 -0.05 -0.10 16 29 O -0.35 -3.94 9.92 -54.64 -0.54 -4.48 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.58 7.91 -51.93 -0.41 0.17 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.69 7.84 -51.93 -0.41 0.28 16 38 H 0.10 0.62 6.74 -51.93 -0.35 0.27 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.82 7.47 -51.93 -0.39 0.44 16 41 H 0.07 0.60 6.22 -51.93 -0.32 0.28 16 42 H 0.13 1.13 4.50 -51.93 -0.23 0.90 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.73 6.72 -51.93 -0.35 0.38 16 45 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 46 H 0.06 0.85 7.30 -51.93 -0.38 0.47 16 47 H 0.37 8.50 6.73 -40.82 -0.27 8.23 16 48 H 0.26 6.92 6.78 -40.82 -0.28 6.64 16 49 H 0.08 0.90 5.87 -51.93 -0.30 0.60 16 50 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 396.37 15.07 5.97 5.97 Total: -1.00 -35.72 396.37 -9.50 -45.22 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.91 Total: 7.39 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -0.53 Total: 4.07 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -1.27 Total: -53.29 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.68 Total: -28.30 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.09 Total: 18.94 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.72 -9.50 -45.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733308535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.813 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds