Wall clock time and date at job start Sat Apr 11 2020 05:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47444 * 2 1 4 4 C 1.53000 * 109.46898 * 120.00333 * 2 1 3 5 5 H 1.09005 * 109.46723 * 297.71150 * 4 2 1 6 6 C 1.50700 * 109.47799 * 57.71460 * 4 2 1 7 7 O 1.21277 * 119.99935 * 110.93691 * 6 4 2 8 8 N 1.34777 * 119.99785 * 290.94539 * 6 4 2 9 9 C 1.46501 * 120.00054 * 176.30392 * 8 6 4 10 10 C 1.52992 * 109.47451 * 179.97438 * 9 8 6 11 11 O 1.42903 * 112.94508 * 53.40401 * 10 9 8 12 12 C 1.53951 * 113.74250 * 281.67738 * 10 9 8 13 13 N 1.47576 * 86.11820 * 222.04859 * 12 10 9 14 14 C 1.36937 * 134.49206 * 204.64194 * 13 12 10 15 15 H 1.08001 * 119.99627 * 184.20395 * 14 13 12 16 16 C 1.38807 * 120.00111 * 4.20774 * 14 13 12 17 17 N 1.31620 * 119.99933 * 6.10850 * 16 14 13 18 18 Si 1.86802 * 120.00373 * 186.11472 * 16 14 13 19 19 H 1.48499 * 109.47390 * 94.97062 * 18 16 14 20 20 H 1.48498 * 109.47276 * 214.97304 * 18 16 14 21 21 H 1.48509 * 109.46928 * 334.97215 * 18 16 14 22 22 C 1.47576 * 91.01657 * 24.63536 * 13 12 10 23 23 N 1.46505 * 109.47243 * 177.71959 * 4 2 1 24 24 C 1.46761 * 124.34729 * 125.38260 * 23 4 2 25 25 C 1.54485 * 105.47089 * 197.01540 * 24 23 4 26 26 C 1.54635 * 101.76562 * 334.58665 * 25 24 23 27 27 C 1.34418 * 124.34613 * 305.08556 * 23 4 2 28 28 O 1.21284 * 124.94109 * 359.56381 * 27 23 4 29 29 H 1.08994 * 109.47067 * 306.39438 * 1 2 3 30 30 H 1.09000 * 109.46619 * 66.39515 * 1 2 3 31 31 H 1.08996 * 109.47165 * 186.38997 * 1 2 3 32 32 H 1.08999 * 109.47188 * 239.99789 * 2 1 3 33 33 H 1.09001 * 109.47169 * 65.28040 * 3 2 1 34 34 H 1.08997 * 109.47316 * 185.27818 * 3 2 1 35 35 H 1.09001 * 109.46856 * 305.28108 * 3 2 1 36 36 H 0.97001 * 120.00499 * 356.30123 * 8 6 4 37 37 H 1.09002 * 109.46892 * 59.99869 * 9 8 6 38 38 H 1.08999 * 109.46646 * 300.00051 * 9 8 6 39 39 H 0.96693 * 114.00021 * 309.67446 * 11 10 9 40 40 H 1.09004 * 113.76406 * 336.34479 * 12 10 9 41 41 H 1.08992 * 113.77198 * 107.74241 * 12 10 9 42 42 H 0.97003 * 120.00007 * 180.02562 * 17 16 14 43 43 H 1.08997 * 113.77487 * 221.05881 * 22 13 12 44 44 H 1.09003 * 113.76946 * 89.66275 * 22 13 12 45 45 H 1.08996 * 110.24918 * 316.01564 * 24 23 4 46 46 H 1.09000 * 110.24904 * 78.01931 * 24 23 4 47 47 H 1.09000 * 110.96630 * 92.70210 * 25 24 23 48 48 H 1.08997 * 110.97008 * 216.46995 * 25 24 23 49 49 H 1.08998 * 110.48966 * 143.47035 * 26 25 24 50 50 H 1.09001 * 110.48476 * 265.99095 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7105 -0.1843 2.1387 6 6 1.4920 -2.1249 1.2779 7 8 2.2343 -3.0692 1.1106 8 7 0.1769 -2.3306 1.4894 9 6 -0.3698 -3.6888 1.4369 10 6 -1.8744 -3.6439 1.7104 11 8 -2.5691 -2.7337 0.8554 12 6 -2.2293 -3.4915 3.2007 13 7 -3.2816 -4.4951 2.9495 14 6 -4.4759 -4.8029 3.5446 15 1 -5.0480 -5.6517 3.2001 16 6 -4.9513 -4.0239 4.5905 17 7 -4.3172 -2.9220 4.9314 18 14 -6.4908 -4.5394 5.5145 19 1 -6.1071 -5.3055 6.7274 20 1 -7.2564 -3.3313 5.9137 21 1 -7.3329 -5.3915 4.6367 22 6 -2.5301 -5.0339 1.7994 23 7 3.5040 -0.7692 1.2221 24 6 4.3687 -0.2775 2.3013 25 6 5.7708 -0.1282 1.6702 26 6 5.7048 -1.1485 0.5101 27 6 4.2277 -1.2741 0.2081 28 8 3.7639 -1.7578 -0.8028 29 1 -0.3633 0.6097 0.8272 30 1 -0.3632 0.4115 -0.9417 31 1 -0.3633 -1.0212 0.1144 32 1 1.8934 -0.5139 -0.8899 33 1 1.7561 1.9282 0.9335 34 1 3.1260 1.4438 -0.0945 35 1 1.6016 1.9828 -0.8389 36 1 -0.4077 -1.5794 1.6763 37 1 0.1180 -4.3061 2.1913 38 1 -0.1922 -4.1139 0.4491 39 1 -2.1771 -1.8505 0.8197 40 1 -1.4461 -3.8358 3.8761 41 1 -2.6152 -2.5062 3.4619 42 1 -4.6492 -2.3778 5.6626 43 1 -3.1561 -5.2800 0.9418 44 1 -1.8352 -5.8312 2.0632 45 1 4.0119 0.6877 2.6604 46 1 4.3979 -0.9977 3.1190 47 1 5.9227 0.8829 1.2923 48 1 6.5501 -0.3979 2.3830 49 1 6.2441 -0.7729 -0.3595 50 1 6.1112 -2.1099 0.8241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733516056.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:33 Heat of formation + Delta-G solvation = -46.261704 kcal Electronic energy + Delta-G solvation = -31366.404391 eV Core-core repulsion = 27203.321642 eV Total energy + Delta-G solvation = -4163.082749 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.14614 -39.61282 -38.49600 -36.52481 -36.03598 -34.91583 -33.97810 -32.02168 -31.90853 -29.06814 -27.79453 -27.39510 -27.11208 -25.60674 -24.96279 -22.31921 -22.00930 -21.14292 -20.87318 -19.52930 -19.19472 -17.80350 -17.20812 -16.77387 -16.48322 -15.90309 -15.81697 -15.43098 -15.02855 -14.80845 -14.37637 -14.19055 -14.01408 -13.83070 -13.64959 -13.47862 -13.39427 -13.16676 -13.01955 -12.79414 -12.67733 -12.66817 -12.38152 -12.24964 -11.82863 -11.79280 -11.38742 -11.35226 -11.25752 -11.04882 -11.04569 -10.95250 -10.74576 -10.41885 -10.05379 -9.79200 -9.68972 -9.54586 -9.19060 -8.86543 -8.83135 -8.79381 -6.89566 -5.77831 -3.10614 2.47512 2.63807 2.66973 3.31748 3.38903 3.43872 3.45819 4.10022 4.16978 4.42462 4.47276 4.47690 4.53815 4.58184 4.63762 4.81722 4.92873 4.98335 5.06482 5.15526 5.21904 5.25016 5.28262 5.35845 5.38075 5.40974 5.49879 5.56555 5.59635 5.61996 5.65364 5.77321 5.87851 6.02892 6.04113 6.06324 6.30212 6.31331 6.40840 6.53417 6.57250 6.96569 6.98515 7.19043 7.46633 7.49610 7.96093 8.10140 8.13597 8.27640 9.02044 9.69058 10.55239 11.38172 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020518 B = 0.002572 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.314867 B =10881.960639 C =10918.223117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.106 4.106 3 C -0.138 4.138 4 C 0.147 3.853 5 H 0.111 0.889 6 C 0.503 3.497 7 O -0.520 6.520 8 N -0.724 5.724 9 C 0.101 3.899 10 C 0.065 3.935 11 O -0.524 6.524 12 C 0.136 3.864 13 N -0.601 5.601 14 C -0.218 4.218 15 H 0.081 0.919 16 C -0.009 4.009 17 N -0.920 5.920 18 Si 0.913 3.087 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.136 3.864 23 N -0.606 5.606 24 C 0.103 3.897 25 C -0.129 4.129 26 C -0.155 4.155 27 C 0.526 3.474 28 O -0.515 6.515 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.401 0.599 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.359 0.641 40 H 0.031 0.969 41 H 0.086 0.914 42 H 0.252 0.748 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.099 0.901 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.114 11.976 -6.506 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.126 4.126 3 C -0.195 4.195 4 C 0.040 3.960 5 H 0.129 0.871 6 C 0.287 3.713 7 O -0.395 6.395 8 N -0.380 5.380 9 C -0.023 4.023 10 C 0.023 3.977 11 O -0.328 6.328 12 C 0.010 3.990 13 N -0.327 5.327 14 C -0.345 4.345 15 H 0.099 0.901 16 C -0.205 4.205 17 N -0.568 5.568 18 Si 0.744 3.256 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.009 3.991 23 N -0.340 5.340 24 C -0.020 4.020 25 C -0.167 4.167 26 C -0.196 4.196 27 C 0.314 3.686 28 O -0.390 6.390 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.238 0.762 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.206 0.794 40 H 0.048 0.952 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.100 0.900 48 H 0.108 0.892 49 H 0.118 0.882 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 19.659 10.525 -7.039 23.384 hybrid contribution -0.696 0.481 1.038 1.339 sum 18.963 11.006 -6.000 22.732 Atomic orbital electron populations 1.22324 0.94003 1.03629 1.03223 1.21410 0.96540 0.96697 0.97911 1.21745 1.00986 0.94772 1.02009 1.20953 0.80046 0.93775 1.01213 0.87093 1.20808 0.82277 0.91487 0.76722 1.90714 1.57552 1.43593 1.47638 1.46324 1.08764 1.10376 1.72525 1.22068 0.94362 0.83331 1.02562 1.23730 0.86752 0.93771 0.93484 1.86639 1.55464 1.23510 1.67166 1.23004 0.89416 0.97045 0.89535 1.45588 1.17532 1.37318 1.32245 1.19005 0.94050 1.09517 1.11956 0.90149 1.24756 0.99182 0.96967 0.99579 1.69804 1.41198 1.14624 1.31134 0.86076 0.82291 0.77393 0.79875 1.21705 1.21695 1.20530 1.22558 0.93303 0.91287 0.91934 1.47888 1.04244 1.62109 1.19794 1.22120 0.89920 0.99936 0.90058 1.22570 0.96499 0.99927 0.97731 1.22323 0.94815 1.01869 1.00545 1.20706 0.89093 0.76250 0.82559 1.90707 1.76854 1.43522 1.27881 0.91785 0.91305 0.90701 0.88665 0.92515 0.92824 0.92131 0.76182 0.90388 0.91134 0.79439 0.95160 0.89639 0.93778 0.92624 0.93189 0.90190 0.91003 0.89966 0.89157 0.88249 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 8.19 37.16 0.30 -1.23 16 2 C -0.11 -1.06 2.33 -90.62 -0.21 -1.27 16 3 C -0.14 -1.07 8.98 37.15 0.33 -0.73 16 4 C 0.15 1.58 2.31 -69.08 -0.16 1.42 16 5 H 0.11 0.90 8.07 -51.93 -0.42 0.48 16 6 C 0.50 7.25 6.73 -10.99 -0.07 7.18 16 7 O -0.52 -9.67 14.96 -7.51 -0.11 -9.78 16 8 N -0.72 -9.70 3.76 -60.30 -0.23 -9.93 16 9 C 0.10 1.61 5.28 -4.04 -0.02 1.59 16 10 C 0.07 1.22 1.52 -89.70 -0.14 1.08 16 11 O -0.52 -9.70 13.51 -35.23 -0.48 -10.18 16 12 C 0.14 3.09 7.12 -2.97 -0.02 3.07 16 13 N -0.60 -15.54 3.69 -177.80 -0.66 -16.20 16 14 C -0.22 -6.19 10.69 -15.06 -0.16 -6.35 16 15 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 16 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 17 N -0.92 -26.90 11.30 55.49 0.63 -26.27 16 18 Si 0.91 22.23 29.56 -169.99 -5.02 17.21 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.14 2.85 8.34 -2.98 -0.02 2.82 16 23 N -0.61 -6.29 2.07 -166.15 -0.34 -6.64 16 24 C 0.10 0.67 7.30 -3.12 -0.02 0.65 16 25 C -0.13 -0.63 7.18 -25.09 -0.18 -0.81 16 26 C -0.16 -1.22 6.86 -26.73 -0.18 -1.41 16 27 C 0.53 6.61 6.72 -10.86 -0.07 6.54 16 28 O -0.52 -8.78 15.22 -7.51 -0.11 -8.90 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.76 3.84 -51.93 -0.20 0.56 16 32 H 0.10 1.27 6.39 -51.93 -0.33 0.93 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.43 7.83 -51.93 -0.41 0.03 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.40 4.55 5.32 -40.82 -0.22 4.34 16 37 H 0.08 1.30 8.04 -51.93 -0.42 0.89 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.36 5.04 6.72 45.56 0.31 5.35 16 40 H 0.03 0.70 8.03 -51.93 -0.42 0.28 16 41 H 0.09 2.14 6.87 -51.93 -0.36 1.78 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.97 8.10 -51.93 -0.42 0.54 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 49 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 393.51 15.07 5.93 5.93 Total: -1.00 -37.76 393.51 -8.62 -46.38 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.50 Total: 6.18 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: -0.73 Total: 12.19 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.60 Total: -59.04 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.70 Total: -28.86 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.76 -8.62 -46.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733516056.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.122 kcal (2) G-P(sol) polarization free energy of solvation -37.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds