Wall clock time and date at job start Sat Apr 11 2020 05:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47444 * 2 1 4 4 C 1.53000 * 109.46898 * 120.00333 * 2 1 3 5 5 H 1.09005 * 109.46723 * 297.71150 * 4 2 1 6 6 C 1.50700 * 109.47799 * 57.71460 * 4 2 1 7 7 O 1.21277 * 119.99935 * 110.93691 * 6 4 2 8 8 N 1.34777 * 119.99785 * 290.94539 * 6 4 2 9 9 C 1.46501 * 120.00054 * 176.30392 * 8 6 4 10 10 C 1.52992 * 109.47451 * 179.97438 * 9 8 6 11 11 O 1.42903 * 112.94508 * 53.40401 * 10 9 8 12 12 C 1.53951 * 113.74250 * 281.67738 * 10 9 8 13 13 N 1.47576 * 86.11820 * 222.04859 * 12 10 9 14 14 C 1.36937 * 134.49206 * 204.64194 * 13 12 10 15 15 H 1.08001 * 119.99627 * 184.20395 * 14 13 12 16 16 C 1.38807 * 120.00111 * 4.20774 * 14 13 12 17 17 N 1.31620 * 119.99933 * 6.10850 * 16 14 13 18 18 Si 1.86802 * 120.00373 * 186.11472 * 16 14 13 19 19 H 1.48499 * 109.47390 * 94.97062 * 18 16 14 20 20 H 1.48498 * 109.47276 * 214.97304 * 18 16 14 21 21 H 1.48509 * 109.46928 * 334.97215 * 18 16 14 22 22 C 1.47576 * 91.01657 * 24.63536 * 13 12 10 23 23 N 1.46505 * 109.47243 * 177.71959 * 4 2 1 24 24 C 1.46761 * 124.34729 * 125.38260 * 23 4 2 25 25 C 1.54485 * 105.47089 * 197.01540 * 24 23 4 26 26 C 1.54635 * 101.76562 * 334.58665 * 25 24 23 27 27 C 1.34418 * 124.34613 * 305.08556 * 23 4 2 28 28 O 1.21284 * 124.94109 * 359.56381 * 27 23 4 29 29 H 1.08994 * 109.47067 * 306.39438 * 1 2 3 30 30 H 1.09000 * 109.46619 * 66.39515 * 1 2 3 31 31 H 1.08996 * 109.47165 * 186.38997 * 1 2 3 32 32 H 1.08999 * 109.47188 * 239.99789 * 2 1 3 33 33 H 1.09001 * 109.47169 * 65.28040 * 3 2 1 34 34 H 1.08997 * 109.47316 * 185.27818 * 3 2 1 35 35 H 1.09001 * 109.46856 * 305.28108 * 3 2 1 36 36 H 0.97001 * 120.00499 * 356.30123 * 8 6 4 37 37 H 1.09002 * 109.46892 * 59.99869 * 9 8 6 38 38 H 1.08999 * 109.46646 * 300.00051 * 9 8 6 39 39 H 0.96693 * 114.00021 * 309.67446 * 11 10 9 40 40 H 1.09004 * 113.76406 * 336.34479 * 12 10 9 41 41 H 1.08992 * 113.77198 * 107.74241 * 12 10 9 42 42 H 0.97003 * 120.00007 * 180.02562 * 17 16 14 43 43 H 1.08997 * 113.77487 * 221.05881 * 22 13 12 44 44 H 1.09003 * 113.76946 * 89.66275 * 22 13 12 45 45 H 1.08996 * 110.24918 * 316.01564 * 24 23 4 46 46 H 1.09000 * 110.24904 * 78.01931 * 24 23 4 47 47 H 1.09000 * 110.96630 * 92.70210 * 25 24 23 48 48 H 1.08997 * 110.97008 * 216.46995 * 25 24 23 49 49 H 1.08998 * 110.48966 * 143.47035 * 26 25 24 50 50 H 1.09001 * 110.48476 * 265.99095 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7105 -0.1843 2.1387 6 6 1.4920 -2.1249 1.2779 7 8 2.2343 -3.0692 1.1106 8 7 0.1769 -2.3306 1.4894 9 6 -0.3698 -3.6888 1.4369 10 6 -1.8744 -3.6439 1.7104 11 8 -2.5691 -2.7337 0.8554 12 6 -2.2293 -3.4915 3.2007 13 7 -3.2816 -4.4951 2.9495 14 6 -4.4759 -4.8029 3.5446 15 1 -5.0480 -5.6517 3.2001 16 6 -4.9513 -4.0239 4.5905 17 7 -4.3172 -2.9220 4.9314 18 14 -6.4908 -4.5394 5.5145 19 1 -6.1071 -5.3055 6.7274 20 1 -7.2564 -3.3313 5.9137 21 1 -7.3329 -5.3915 4.6367 22 6 -2.5301 -5.0339 1.7994 23 7 3.5040 -0.7692 1.2221 24 6 4.3687 -0.2775 2.3013 25 6 5.7708 -0.1282 1.6702 26 6 5.7048 -1.1485 0.5101 27 6 4.2277 -1.2741 0.2081 28 8 3.7639 -1.7578 -0.8028 29 1 -0.3633 0.6097 0.8272 30 1 -0.3632 0.4115 -0.9417 31 1 -0.3633 -1.0212 0.1144 32 1 1.8934 -0.5139 -0.8899 33 1 1.7561 1.9282 0.9335 34 1 3.1260 1.4438 -0.0945 35 1 1.6016 1.9828 -0.8389 36 1 -0.4077 -1.5794 1.6763 37 1 0.1180 -4.3061 2.1913 38 1 -0.1922 -4.1139 0.4491 39 1 -2.1771 -1.8505 0.8197 40 1 -1.4461 -3.8358 3.8761 41 1 -2.6152 -2.5062 3.4619 42 1 -4.6492 -2.3778 5.6626 43 1 -3.1561 -5.2800 0.9418 44 1 -1.8352 -5.8312 2.0632 45 1 4.0119 0.6877 2.6604 46 1 4.3979 -0.9977 3.1190 47 1 5.9227 0.8829 1.2923 48 1 6.5501 -0.3979 2.3830 49 1 6.2441 -0.7729 -0.3595 50 1 6.1112 -2.1099 0.8241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733516056.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:32 Heat of formation + Delta-G solvation = -73.978891 kcal Electronic energy + Delta-G solvation = -31367.606299 eV Core-core repulsion = 27203.321642 eV Total energy + Delta-G solvation = -4164.284657 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07551 -40.90203 -39.87896 -37.46681 -36.89976 -36.48115 -35.28089 -34.02100 -32.61950 -30.55117 -28.73767 -28.40199 -27.84190 -27.08205 -26.68741 -23.85505 -22.80468 -22.09218 -21.81070 -21.05466 -20.30785 -18.97768 -18.60907 -18.07706 -17.46869 -17.15823 -16.96981 -16.72307 -16.39285 -15.97322 -15.78245 -15.60812 -15.08156 -15.02760 -14.82736 -14.60387 -14.42544 -14.32218 -14.01316 -13.85800 -13.72063 -13.66835 -13.43077 -13.29532 -13.00065 -12.94926 -12.85701 -12.56568 -12.33204 -12.22104 -12.14493 -11.99753 -11.98255 -11.79476 -11.70213 -11.45883 -11.02523 -10.98628 -10.71998 -10.60817 -10.10786 -9.65738 -8.92995 -7.90528 -5.24769 1.45525 1.46953 1.51437 1.55488 1.56083 1.86837 2.28717 2.45701 3.01525 3.25415 3.33020 3.41041 3.53110 3.65312 3.70425 3.76335 3.86346 3.90516 4.08392 4.18440 4.27071 4.31461 4.33347 4.60923 4.64088 4.69023 4.71297 4.73286 4.74413 4.78121 4.88361 4.89660 4.95395 4.97879 5.11870 5.14144 5.21401 5.24385 5.25415 5.30861 5.34059 5.37794 5.48821 5.57461 5.93210 6.20191 6.36851 6.77877 6.90842 7.10642 7.28329 7.58346 8.51779 9.24532 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020518 B = 0.002572 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.314867 B =10881.960639 C =10918.223117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.100 4.100 3 C -0.131 4.131 4 C 0.146 3.854 5 H 0.146 0.854 6 C 0.499 3.501 7 O -0.567 6.567 8 N -0.713 5.713 9 C 0.117 3.883 10 C 0.099 3.901 11 O -0.538 6.538 12 C 0.137 3.863 13 N -0.633 5.633 14 C -0.237 4.237 15 H 0.079 0.921 16 C -0.063 4.063 17 N -0.946 5.946 18 Si 0.979 3.021 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.271 1.271 22 C 0.128 3.872 23 N -0.606 5.606 24 C 0.093 3.907 25 C -0.114 4.114 26 C -0.154 4.154 27 C 0.508 3.492 28 O -0.574 6.574 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.412 0.588 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.380 0.620 40 H 0.027 0.973 41 H 0.061 0.939 42 H 0.249 0.751 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.070 0.930 47 H 0.100 0.900 48 H 0.113 0.887 49 H 0.109 0.891 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.931 13.862 -5.629 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.120 4.120 3 C -0.188 4.188 4 C 0.039 3.961 5 H 0.163 0.837 6 C 0.285 3.715 7 O -0.445 6.445 8 N -0.370 5.370 9 C -0.008 4.008 10 C 0.056 3.944 11 O -0.345 6.345 12 C 0.011 3.989 13 N -0.359 5.359 14 C -0.365 4.365 15 H 0.097 0.903 16 C -0.257 4.257 17 N -0.594 5.594 18 Si 0.807 3.193 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.196 1.196 22 C 0.003 3.997 23 N -0.338 5.338 24 C -0.028 4.028 25 C -0.151 4.151 26 C -0.194 4.194 27 C 0.297 3.703 28 O -0.453 6.453 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.252 0.748 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.229 0.771 40 H 0.045 0.955 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.127 0.873 46 H 0.088 0.912 47 H 0.119 0.881 48 H 0.132 0.868 49 H 0.127 0.873 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 20.494 12.456 -6.147 24.758 hybrid contribution -0.935 -0.126 0.723 1.189 sum 19.559 12.330 -5.424 23.749 Atomic orbital electron populations 1.22315 0.93178 1.03022 1.04504 1.21324 0.97181 0.97664 0.95798 1.21697 1.00677 0.93001 1.03403 1.21110 0.80619 0.91378 1.02964 0.83651 1.21578 0.81854 0.92757 0.75276 1.90693 1.58645 1.45417 1.49724 1.46223 1.08957 1.09697 1.72119 1.21706 0.92164 0.84776 1.02178 1.23133 0.88043 0.92412 0.90772 1.86592 1.56276 1.24951 1.66653 1.22943 0.88578 0.95162 0.92177 1.45947 1.17748 1.38687 1.33564 1.19351 0.95334 1.09478 1.12329 0.90285 1.25575 1.02333 0.97199 1.00549 1.69966 1.42582 1.15422 1.31428 0.85060 0.78871 0.76917 0.78461 1.21459 1.21746 1.19562 1.22791 0.93340 0.93129 0.90488 1.48113 1.04342 1.61168 1.20210 1.22466 0.90302 1.01120 0.88940 1.22614 0.96085 0.99868 0.96582 1.22374 0.91540 1.03058 1.02408 1.21591 0.91222 0.75345 0.82102 1.90664 1.78278 1.46103 1.30289 0.89284 0.90975 0.92380 0.92611 0.90202 0.93203 0.91768 0.74773 0.91004 0.91263 0.77095 0.95506 0.92045 0.94163 0.92660 0.91117 0.87265 0.91180 0.88104 0.86826 0.87286 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 8.19 71.98 0.59 -2.18 16 2 C -0.10 -1.89 2.33 -10.79 -0.03 -1.92 16 3 C -0.13 -1.71 8.98 71.98 0.65 -1.06 16 4 C 0.15 2.92 2.31 44.24 0.10 3.03 16 5 H 0.15 1.87 8.07 -2.38 -0.02 1.85 16 6 C 0.50 14.27 6.73 87.66 0.59 14.86 16 7 O -0.57 -21.57 14.96 9.47 0.14 -21.43 16 8 N -0.71 -18.67 3.76 -463.07 -1.74 -20.42 16 9 C 0.12 3.69 5.28 86.38 0.46 4.14 16 10 C 0.10 3.65 1.52 -10.14 -0.02 3.64 16 11 O -0.54 -19.50 13.51 -148.98 -2.01 -21.52 16 12 C 0.14 6.27 7.12 86.48 0.62 6.89 16 13 N -0.63 -32.98 3.69 -720.25 -2.66 -35.64 16 14 C -0.24 -13.55 10.69 84.03 0.90 -12.66 16 15 H 0.08 4.39 7.84 -2.91 -0.02 4.36 16 16 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16 17 N -0.95 -55.77 11.30 21.65 0.24 -55.52 16 18 Si 0.98 45.85 29.56 68.60 2.03 47.88 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 C 0.13 5.35 8.34 86.48 0.72 6.07 16 23 N -0.61 -11.79 2.07 -798.17 -1.65 -13.45 16 24 C 0.09 0.94 7.30 86.83 0.63 1.58 16 25 C -0.11 -0.74 7.18 31.66 0.23 -0.51 16 26 C -0.15 -2.25 6.86 30.59 0.21 -2.04 16 27 C 0.51 12.82 6.72 87.90 0.59 13.41 16 28 O -0.57 -20.66 15.22 9.45 0.14 -20.52 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.12 3.84 -2.39 -0.01 1.11 16 32 H 0.06 1.54 6.39 -2.39 -0.02 1.52 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 0.70 7.83 -2.39 -0.02 0.68 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.41 8.81 5.32 -92.71 -0.49 8.32 16 37 H 0.07 2.39 8.04 -2.39 -0.02 2.37 16 38 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.38 10.17 6.72 -74.06 -0.50 9.67 16 40 H 0.03 1.25 8.03 -2.39 -0.02 1.23 16 41 H 0.06 3.11 6.87 -2.39 -0.02 3.09 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.07 2.67 8.10 -2.39 -0.02 2.66 16 45 H 0.11 0.50 8.14 -2.39 -0.02 0.49 16 46 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 49 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -85.54 393.51 1.16 -84.38 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.03 Total: 26.11 kcal Atomic # 6 Polarization: 23.41 SS G_CDS: 6.71 Total: 30.12 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -5.81 Total: -125.03 kcal Atomic # 8 Polarization: -61.74 SS G_CDS: -1.73 Total: -63.46 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -85.54 1.16 -84.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733516056.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.402 kcal (2) G-P(sol) polarization free energy of solvation -85.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds