Wall clock time and date at job start Sat Apr 11 2020 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47051 * 2 1 4 4 C 1.52996 * 109.47546 * 239.99851 * 2 1 3 5 5 N 1.46506 * 109.46975 * 119.99700 * 2 1 3 6 6 C 1.46759 * 124.34920 * 180.02562 * 5 2 1 7 7 C 1.54483 * 105.47456 * 197.04003 * 6 5 2 8 8 H 1.08997 * 111.00158 * 92.71642 * 7 6 5 9 9 C 1.50701 * 110.97029 * 216.46734 * 7 6 5 10 10 O 1.21280 * 119.99781 * 353.82694 * 9 7 6 11 11 N 1.34771 * 119.99622 * 173.83370 * 9 7 6 12 12 C 1.46505 * 119.99622 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 11 9 14 14 O 1.42908 * 112.94320 * 55.32896 * 13 12 11 15 15 C 1.53951 * 113.74369 * 283.74039 * 13 12 11 16 16 N 1.47809 * 86.03702 * 222.08130 * 15 13 12 17 17 C 1.36937 * 134.45792 * 204.63907 * 16 15 13 18 18 H 1.07995 * 120.00481 * 179.87025 * 17 16 15 19 19 C 1.38816 * 119.99881 * 359.87465 * 17 16 15 20 20 N 1.31625 * 119.99967 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00222 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46855 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47065 * 119.99592 * 21 19 17 24 24 H 1.48492 * 109.46974 * 239.99630 * 21 19 17 25 25 C 1.47588 * 91.05044 * 24.54951 * 16 15 13 26 26 C 1.54629 * 101.76107 * 334.58343 * 7 6 5 27 27 C 1.34413 * 124.34724 * 0.03057 * 5 2 1 28 28 O 1.21284 * 124.94706 * 359.53057 * 27 5 2 29 29 H 1.08993 * 109.47166 * 300.00579 * 1 2 3 30 30 H 1.09007 * 109.46596 * 60.00487 * 1 2 3 31 31 H 1.09000 * 109.46745 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47092 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47493 * 299.99934 * 3 2 1 34 34 H 1.09004 * 109.47181 * 59.99863 * 3 2 1 35 35 H 1.09003 * 109.46861 * 300.00199 * 4 2 1 36 36 H 1.08997 * 109.47014 * 59.99877 * 4 2 1 37 37 H 1.08999 * 109.47115 * 180.02562 * 4 2 1 38 38 H 1.09002 * 110.25067 * 78.03878 * 6 5 2 39 39 H 1.09001 * 110.24883 * 316.03716 * 6 5 2 40 40 H 0.96996 * 120.00772 * 359.97438 * 11 9 7 41 41 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 42 42 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 43 43 H 0.96693 * 114.00184 * 309.66681 * 14 13 12 44 44 H 1.09001 * 113.76572 * 336.34848 * 15 13 12 45 45 H 1.09008 * 113.76849 * 107.74358 * 15 13 12 46 46 H 0.96991 * 120.00221 * 180.02562 * 20 19 17 47 47 H 1.09001 * 113.76348 * 221.15153 * 25 16 15 48 48 H 1.08997 * 113.87185 * 89.76660 * 25 16 15 49 49 H 1.09007 * 110.48623 * 143.47588 * 26 7 6 50 50 H 1.08996 * 110.48701 * 266.11821 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1963 6 6 3.4367 -0.8785 1.5229 7 6 3.4697 -1.9972 2.5878 8 1 3.6030 -2.9744 2.1237 9 6 4.5461 -1.7373 3.6099 10 8 5.3150 -0.8116 3.4588 11 7 4.6543 -2.5336 4.6918 12 6 5.7011 -2.2812 5.6853 13 6 5.6039 -3.3205 6.8039 14 8 5.6577 -4.6647 6.3216 15 6 4.4517 -3.0621 7.7917 16 7 5.4155 -3.4255 8.8517 17 6 5.3010 -3.9171 10.1247 18 1 6.1870 -4.1056 10.7126 19 6 4.0458 -4.1732 10.6594 20 7 2.9658 -3.9430 9.9431 21 14 3.8894 -4.8445 12.3956 22 1 5.2422 -5.0151 12.9840 23 1 3.1047 -3.8947 13.2247 24 1 3.1971 -6.1576 12.3581 25 6 6.5504 -3.0481 7.9870 26 6 2.0642 -1.8720 3.2201 27 6 1.2248 -1.2335 2.1355 28 8 0.0123 -1.2139 2.1167 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2491 36 1 1.6768 -0.2075 -2.1391 37 1 3.1301 -0.7216 -1.2489 38 1 3.8553 0.0420 1.9298 39 1 3.9906 -1.1858 0.6358 40 1 4.0393 -3.2738 4.8129 41 1 6.6789 -2.3505 5.2084 42 1 5.5713 -1.2835 6.1045 43 1 5.0434 -4.8477 5.5977 44 1 4.1298 -2.0214 7.8285 45 1 3.6221 -3.7621 7.6918 46 1 2.0888 -4.1216 10.3168 47 1 7.3933 -3.7370 8.0429 48 1 6.8478 -2.0036 8.0802 49 1 1.6721 -2.8563 3.4765 50 1 2.0983 -1.2324 4.1020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754768569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:58 Heat of formation + Delta-G solvation = -55.158125 kcal Electronic energy + Delta-G solvation = -30433.044837 eV Core-core repulsion = 26269.576310 eV Total energy + Delta-G solvation = -4163.468527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.30145 -39.81082 -38.67487 -36.97724 -35.81996 -34.97131 -34.13882 -32.03262 -31.01152 -28.57826 -28.22978 -27.70445 -27.38214 -26.11316 -25.05767 -23.45831 -21.83188 -21.74750 -20.38858 -19.37366 -18.90266 -18.01710 -16.93839 -16.79859 -16.42847 -16.10900 -15.70072 -15.34382 -15.19940 -14.69207 -14.38608 -14.32228 -14.13186 -14.01012 -13.90493 -13.71211 -13.54061 -13.33581 -12.91586 -12.76499 -12.59648 -12.40253 -12.36619 -12.30757 -11.99519 -11.85969 -11.76969 -11.69076 -11.38034 -11.32216 -11.10310 -10.97070 -10.79192 -10.46989 -10.17697 -9.83488 -9.60729 -9.53385 -9.31510 -9.05275 -8.93576 -8.85946 -6.93631 -5.80511 -3.12247 2.36205 2.43757 2.56144 3.03098 3.37947 3.43260 3.45799 3.93490 4.02048 4.40017 4.42728 4.45100 4.47106 4.55051 4.61402 4.69143 4.83945 4.98199 5.09249 5.15632 5.18675 5.22441 5.24585 5.30639 5.36220 5.39485 5.48218 5.51555 5.53679 5.59505 5.61035 5.67158 5.70979 5.94298 5.95219 6.05043 6.22137 6.32462 6.38724 6.45937 6.50860 6.88145 6.95553 7.11668 7.32136 7.46190 7.92512 7.96310 8.01430 8.09392 9.00439 9.66928 10.51988 11.36912 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019128 B = 0.002329 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.495425 B =12017.607116 C =12961.795475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.173 3.827 3 C -0.159 4.159 4 C -0.158 4.158 5 N -0.611 5.611 6 C 0.119 3.881 7 C -0.124 4.124 8 H 0.119 0.881 9 C 0.526 3.474 10 O -0.537 6.537 11 N -0.719 5.719 12 C 0.102 3.898 13 C 0.063 3.937 14 O -0.526 6.526 15 C 0.144 3.856 16 N -0.603 5.603 17 C -0.219 4.219 18 H 0.082 0.918 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.136 3.864 26 C -0.149 4.149 27 C 0.522 3.478 28 O -0.524 6.524 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.401 0.599 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.362 0.638 44 H 0.034 0.966 45 H 0.078 0.922 46 H 0.253 0.747 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.113 0.887 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.598 6.336 -23.698 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.090 3.910 3 C -0.217 4.217 4 C -0.216 4.216 5 N -0.346 5.346 6 C -0.004 4.004 7 C -0.146 4.146 8 H 0.137 0.863 9 C 0.311 3.689 10 O -0.414 6.414 11 N -0.370 5.370 12 C -0.022 4.022 13 C 0.020 3.980 14 O -0.329 6.329 15 C 0.019 3.981 16 N -0.328 5.328 17 C -0.346 4.346 18 H 0.099 0.901 19 C -0.205 4.205 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.010 3.990 26 C -0.190 4.190 27 C 0.310 3.690 28 O -0.401 6.401 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.236 0.764 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.207 0.793 44 H 0.052 0.948 45 H 0.097 0.903 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.131 0.869 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.401 6.881 -23.091 24.097 hybrid contribution -0.741 -0.586 0.665 1.155 sum -1.142 6.295 -22.426 23.321 Atomic orbital electron populations 1.22104 0.92033 1.03599 1.02098 1.20478 0.95339 0.91627 0.83548 1.22201 1.01710 0.95053 1.02698 1.22190 1.01589 1.01008 0.96797 1.48461 1.07075 1.56446 1.22626 1.21893 0.81856 0.98987 0.97713 1.22243 0.94211 1.01971 0.96151 0.86277 1.20008 0.84765 0.82131 0.81964 1.90721 1.43782 1.30319 1.76537 1.45913 1.35010 1.33094 1.23009 1.22098 0.90677 1.00406 0.89067 1.23772 1.02059 0.81158 0.90981 1.86631 1.63764 1.27493 1.55030 1.22934 0.93258 0.98177 0.83780 1.45715 1.00677 1.73565 1.12886 1.19038 0.92799 1.34887 0.87892 0.90063 1.24773 0.95190 1.01846 0.98660 1.69795 0.96972 1.53887 1.36308 0.86019 0.77558 0.78262 0.83757 1.20437 1.21753 1.21677 1.22542 0.92755 0.97837 0.85904 1.22426 0.92960 1.04641 0.98924 1.20706 0.87419 0.78015 0.82891 1.90748 1.12623 1.59562 1.77148 0.91169 0.92429 0.91255 0.92014 0.91278 0.92036 0.92079 0.91222 0.92098 0.89132 0.89822 0.76421 0.90954 0.90150 0.79262 0.94817 0.90350 0.93700 0.92662 0.93252 0.86859 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 7.00 37.16 0.26 -1.04 16 2 C 0.17 1.39 1.20 -131.82 -0.16 1.23 16 3 C -0.16 -1.12 8.54 37.16 0.32 -0.80 16 4 C -0.16 -0.98 8.49 37.16 0.32 -0.67 16 5 N -0.61 -5.55 2.76 -157.57 -0.43 -5.98 16 6 C 0.12 0.96 5.91 -3.12 -0.02 0.94 16 7 C -0.12 -0.96 3.55 -90.14 -0.32 -1.28 16 8 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 9 C 0.53 5.72 7.07 -10.99 -0.08 5.64 16 10 O -0.54 -7.69 15.57 5.56 0.09 -7.61 16 11 N -0.72 -7.76 5.28 -60.29 -0.32 -8.08 16 12 C 0.10 1.39 5.26 -4.04 -0.02 1.37 16 13 C 0.06 1.08 1.49 -89.69 -0.13 0.95 16 14 O -0.53 -8.94 13.50 -35.23 -0.48 -9.42 16 15 C 0.14 3.15 6.92 -2.84 -0.02 3.13 16 16 N -0.60 -15.17 3.70 -177.57 -0.66 -15.82 16 17 C -0.22 -6.12 10.70 -15.06 -0.16 -6.28 16 18 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -26.84 11.39 55.49 0.63 -26.21 16 21 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.14 2.71 8.34 -2.96 -0.02 2.68 16 26 C -0.15 -1.31 6.37 -26.74 -0.17 -1.48 16 27 C 0.52 5.79 7.84 -10.86 -0.09 5.71 16 28 O -0.52 -7.53 13.99 5.55 0.08 -7.45 16 29 H 0.07 0.79 7.06 -51.93 -0.37 0.42 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.74 7.08 -51.93 -0.37 0.38 16 32 H 0.06 0.41 7.90 -51.92 -0.41 0.00 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.34 7.21 -51.93 -0.37 -0.03 16 38 H 0.09 0.87 7.06 -51.93 -0.37 0.50 16 39 H 0.08 0.55 7.12 -51.93 -0.37 0.18 16 40 H 0.40 3.59 7.42 -40.82 -0.30 3.28 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 43 H 0.36 4.40 7.73 45.56 0.35 4.75 16 44 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 45 H 0.08 1.89 7.17 -51.92 -0.37 1.52 16 46 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 49 H 0.11 0.84 8.14 -51.92 -0.42 0.42 16 50 H 0.11 1.07 7.89 -51.93 -0.41 0.66 16 LS Contribution 398.55 15.07 6.01 6.01 Total: -1.00 -35.41 398.55 -8.10 -43.51 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.60 Total: 4.20 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -0.39 Total: 9.77 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.78 Total: -56.10 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.31 Total: -24.48 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.41 -8.10 -43.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754768569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.648 kcal (2) G-P(sol) polarization free energy of solvation -35.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds