Wall clock time and date at job start Sat Apr 11 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47051 * 2 1 4 4 C 1.52996 * 109.47546 * 239.99851 * 2 1 3 5 5 N 1.46506 * 109.46975 * 119.99700 * 2 1 3 6 6 C 1.46759 * 124.34920 * 180.02562 * 5 2 1 7 7 C 1.54483 * 105.47456 * 197.04003 * 6 5 2 8 8 H 1.08997 * 111.00158 * 92.71642 * 7 6 5 9 9 C 1.50701 * 110.97029 * 216.46734 * 7 6 5 10 10 O 1.21280 * 119.99781 * 353.82694 * 9 7 6 11 11 N 1.34771 * 119.99622 * 173.83370 * 9 7 6 12 12 C 1.46505 * 119.99622 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 11 9 14 14 O 1.42908 * 112.94320 * 55.32896 * 13 12 11 15 15 C 1.53951 * 113.74369 * 283.74039 * 13 12 11 16 16 N 1.47809 * 86.03702 * 222.08130 * 15 13 12 17 17 C 1.36937 * 134.45792 * 204.63907 * 16 15 13 18 18 H 1.07995 * 120.00481 * 179.87025 * 17 16 15 19 19 C 1.38816 * 119.99881 * 359.87465 * 17 16 15 20 20 N 1.31625 * 119.99967 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00222 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46855 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47065 * 119.99592 * 21 19 17 24 24 H 1.48492 * 109.46974 * 239.99630 * 21 19 17 25 25 C 1.47588 * 91.05044 * 24.54951 * 16 15 13 26 26 C 1.54629 * 101.76107 * 334.58343 * 7 6 5 27 27 C 1.34413 * 124.34724 * 0.03057 * 5 2 1 28 28 O 1.21284 * 124.94706 * 359.53057 * 27 5 2 29 29 H 1.08993 * 109.47166 * 300.00579 * 1 2 3 30 30 H 1.09007 * 109.46596 * 60.00487 * 1 2 3 31 31 H 1.09000 * 109.46745 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47092 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47493 * 299.99934 * 3 2 1 34 34 H 1.09004 * 109.47181 * 59.99863 * 3 2 1 35 35 H 1.09003 * 109.46861 * 300.00199 * 4 2 1 36 36 H 1.08997 * 109.47014 * 59.99877 * 4 2 1 37 37 H 1.08999 * 109.47115 * 180.02562 * 4 2 1 38 38 H 1.09002 * 110.25067 * 78.03878 * 6 5 2 39 39 H 1.09001 * 110.24883 * 316.03716 * 6 5 2 40 40 H 0.96996 * 120.00772 * 359.97438 * 11 9 7 41 41 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 42 42 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 43 43 H 0.96693 * 114.00184 * 309.66681 * 14 13 12 44 44 H 1.09001 * 113.76572 * 336.34848 * 15 13 12 45 45 H 1.09008 * 113.76849 * 107.74358 * 15 13 12 46 46 H 0.96991 * 120.00221 * 180.02562 * 20 19 17 47 47 H 1.09001 * 113.76348 * 221.15153 * 25 16 15 48 48 H 1.08997 * 113.87185 * 89.76660 * 25 16 15 49 49 H 1.09007 * 110.48623 * 143.47588 * 26 7 6 50 50 H 1.08996 * 110.48701 * 266.11821 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1963 6 6 3.4367 -0.8785 1.5229 7 6 3.4697 -1.9972 2.5878 8 1 3.6030 -2.9744 2.1237 9 6 4.5461 -1.7373 3.6099 10 8 5.3150 -0.8116 3.4588 11 7 4.6543 -2.5336 4.6918 12 6 5.7011 -2.2812 5.6853 13 6 5.6039 -3.3205 6.8039 14 8 5.6577 -4.6647 6.3216 15 6 4.4517 -3.0621 7.7917 16 7 5.4155 -3.4255 8.8517 17 6 5.3010 -3.9171 10.1247 18 1 6.1870 -4.1056 10.7126 19 6 4.0458 -4.1732 10.6594 20 7 2.9658 -3.9430 9.9431 21 14 3.8894 -4.8445 12.3956 22 1 5.2422 -5.0151 12.9840 23 1 3.1047 -3.8947 13.2247 24 1 3.1971 -6.1576 12.3581 25 6 6.5504 -3.0481 7.9870 26 6 2.0642 -1.8720 3.2201 27 6 1.2248 -1.2335 2.1355 28 8 0.0123 -1.2139 2.1167 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2491 36 1 1.6768 -0.2075 -2.1391 37 1 3.1301 -0.7216 -1.2489 38 1 3.8553 0.0420 1.9298 39 1 3.9906 -1.1858 0.6358 40 1 4.0393 -3.2738 4.8129 41 1 6.6789 -2.3505 5.2084 42 1 5.5713 -1.2835 6.1045 43 1 5.0434 -4.8477 5.5977 44 1 4.1298 -2.0214 7.8285 45 1 3.6221 -3.7621 7.6918 46 1 2.0888 -4.1216 10.3168 47 1 7.3933 -3.7370 8.0429 48 1 6.8478 -2.0036 8.0802 49 1 1.6721 -2.8563 3.4765 50 1 2.0983 -1.2324 4.1020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754768569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:57 Heat of formation + Delta-G solvation = -82.473608 kcal Electronic energy + Delta-G solvation = -30434.229326 eV Core-core repulsion = 26269.576310 eV Total energy + Delta-G solvation = -4164.653015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.09688 -40.94836 -39.98121 -37.78723 -36.60651 -36.42142 -35.27960 -33.99613 -31.81795 -30.09542 -28.95844 -28.23532 -28.17559 -27.60705 -26.72054 -24.55267 -23.33585 -22.46590 -21.31543 -20.86982 -19.67398 -19.06100 -18.58966 -17.70558 -17.44773 -17.15200 -17.04096 -16.46772 -16.19177 -16.01684 -15.73782 -15.41659 -15.07122 -14.96087 -14.83393 -14.75766 -14.65232 -14.37161 -14.19428 -13.94811 -13.81361 -13.37365 -13.21506 -13.05188 -12.98333 -12.92330 -12.85537 -12.63313 -12.52939 -12.46541 -12.39294 -12.16744 -12.04327 -11.94608 -11.76260 -11.41436 -10.99472 -10.95142 -10.69408 -10.46179 -10.12755 -9.68054 -8.92244 -7.91076 -5.23044 1.45643 1.46167 1.51402 1.56342 1.56858 1.81663 2.16083 2.46486 3.09108 3.18511 3.28899 3.31913 3.37308 3.59768 3.78303 3.80549 3.92982 3.93740 3.95228 4.09408 4.18466 4.41312 4.49154 4.58285 4.68264 4.71321 4.71941 4.72989 4.79990 4.81202 4.82069 4.85039 4.93356 4.93521 4.96732 4.99011 5.18802 5.19079 5.30061 5.32211 5.36199 5.37528 5.51610 5.69094 5.93278 6.12458 6.44822 6.88269 6.92535 7.13859 7.17544 7.59919 8.53102 9.25527 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019128 B = 0.002329 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.495425 B =12017.607116 C =12961.795475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.164 3.836 3 C -0.154 4.154 4 C -0.151 4.151 5 N -0.606 5.606 6 C 0.119 3.881 7 C -0.108 4.108 8 H 0.155 0.845 9 C 0.531 3.469 10 O -0.569 6.569 11 N -0.713 5.713 12 C 0.118 3.882 13 C 0.100 3.900 14 O -0.540 6.540 15 C 0.143 3.857 16 N -0.638 5.638 17 C -0.231 4.231 18 H 0.081 0.919 19 C -0.067 4.067 20 N -0.950 5.950 21 Si 0.977 3.023 22 H -0.267 1.267 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.128 3.872 26 C -0.145 4.145 27 C 0.512 3.488 28 O -0.566 6.566 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.412 0.588 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.384 0.616 44 H 0.026 0.974 45 H 0.050 0.950 46 H 0.248 0.752 47 H 0.057 0.943 48 H 0.072 0.928 49 H 0.129 0.871 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.790 5.983 -25.583 26.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.082 3.918 3 C -0.212 4.212 4 C -0.209 4.209 5 N -0.340 5.340 6 C -0.004 4.004 7 C -0.129 4.129 8 H 0.172 0.828 9 C 0.318 3.682 10 O -0.448 6.448 11 N -0.365 5.365 12 C -0.007 4.007 13 C 0.057 3.943 14 O -0.347 6.347 15 C 0.017 3.983 16 N -0.365 5.365 17 C -0.359 4.359 18 H 0.099 0.901 19 C -0.260 4.260 20 N -0.599 5.599 21 Si 0.806 3.194 22 H -0.191 1.191 23 H -0.220 1.220 24 H -0.219 1.219 25 C 0.003 3.997 26 C -0.186 4.186 27 C 0.301 3.699 28 O -0.446 6.446 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.249 0.751 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.233 0.767 44 H 0.044 0.956 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.147 0.853 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.024 6.525 -25.023 25.880 hybrid contribution -1.139 -0.431 1.207 1.715 sum -0.115 6.094 -23.816 24.583 Atomic orbital electron populations 1.22006 0.93214 1.02228 1.01731 1.20687 0.94513 0.92530 0.84098 1.22171 1.02053 0.94269 1.02732 1.22141 1.02238 1.00486 0.96049 1.48586 1.07360 1.55539 1.22469 1.21964 0.81170 0.98541 0.98732 1.22216 0.92065 1.03625 0.95019 0.82771 1.20395 0.84751 0.81160 0.81904 1.90719 1.45277 1.31610 1.77219 1.45800 1.34610 1.33608 1.22494 1.21732 0.92120 0.98376 0.88448 1.23100 0.97811 0.82245 0.91097 1.86581 1.64566 1.27326 1.56219 1.22890 0.93581 0.96784 0.85025 1.46129 1.03585 1.73930 1.12806 1.19390 0.92894 1.34287 0.89377 0.90132 1.25573 0.95064 1.02965 1.02365 1.69965 0.96999 1.55302 1.37650 0.85029 0.77765 0.77143 0.79509 1.19138 1.21976 1.21866 1.22798 0.92091 0.98881 0.85951 1.22408 0.93265 1.05065 0.97830 1.21094 0.87155 0.78066 0.83619 1.90729 1.14390 1.61305 1.78145 0.93873 0.90363 0.93106 0.91330 0.89488 0.93815 0.92652 0.89706 0.90931 0.90582 0.87381 0.75140 0.89732 0.90905 0.76661 0.95638 0.93166 0.94319 0.92512 0.91091 0.85275 0.88058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 7.00 71.98 0.50 -1.96 16 2 C 0.16 2.43 1.20 3.60 0.00 2.43 16 3 C -0.15 -1.96 8.54 71.98 0.61 -1.34 16 4 C -0.15 -1.49 8.49 71.98 0.61 -0.88 16 5 N -0.61 -10.31 2.76 -771.03 -2.13 -12.43 16 6 C 0.12 1.65 5.91 86.83 0.51 2.16 16 7 C -0.11 -1.39 3.55 -10.48 -0.04 -1.43 16 8 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 9 C 0.53 10.30 7.07 87.66 0.62 10.92 16 10 O -0.57 -15.22 15.57 -3.03 -0.05 -15.26 16 11 N -0.71 -13.75 5.28 -463.06 -2.45 -16.20 16 12 C 0.12 2.98 5.26 86.38 0.45 3.43 16 13 C 0.10 3.29 1.49 -10.13 -0.02 3.28 16 14 O -0.54 -17.32 13.50 -148.98 -2.01 -19.33 16 15 C 0.14 6.27 6.92 86.44 0.60 6.87 16 16 N -0.64 -32.24 3.70 -719.54 -2.66 -34.90 16 17 C -0.23 -13.02 10.70 84.03 0.90 -12.12 16 18 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 19 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 20 N -0.95 -56.45 11.39 21.65 0.25 -56.20 16 21 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 25 C 0.13 4.96 8.34 86.48 0.72 5.68 16 26 C -0.15 -2.37 6.37 30.59 0.19 -2.18 16 27 C 0.51 11.24 7.84 87.90 0.69 11.93 16 28 O -0.57 -16.82 13.99 -3.04 -0.04 -16.86 16 29 H 0.04 1.01 7.06 -2.39 -0.02 1.00 16 30 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.05 1.11 7.08 -2.39 -0.02 1.10 16 32 H 0.07 0.78 7.90 -2.38 -0.02 0.76 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.07 0.56 7.21 -2.39 -0.02 0.55 16 38 H 0.08 1.34 7.06 -2.39 -0.02 1.33 16 39 H 0.11 1.02 7.12 -2.39 -0.02 1.01 16 40 H 0.41 6.34 7.42 -92.71 -0.69 5.65 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.07 2.00 8.09 -2.39 -0.02 1.98 16 43 H 0.38 8.36 7.73 -74.06 -0.57 7.79 16 44 H 0.03 1.16 8.06 -2.39 -0.02 1.14 16 45 H 0.05 2.48 7.17 -2.38 -0.02 2.46 16 46 H 0.25 14.33 8.31 -92.72 -0.77 13.56 16 47 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.07 2.46 8.10 -2.39 -0.02 2.44 16 49 H 0.13 1.69 8.14 -2.38 -0.02 1.67 16 50 H 0.10 1.90 7.89 -2.39 -0.02 1.89 16 Total: -1.00 -78.90 398.55 -0.53 -79.43 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -0.31 Total: 20.35 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 6.84 Total: 23.45 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -6.99 Total: -119.74 kcal Atomic # 8 Polarization: -49.35 SS G_CDS: -2.10 Total: -51.45 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -78.90 -0.53 -79.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754768569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.044 kcal (2) G-P(sol) polarization free energy of solvation -78.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds