Wall clock time and date at job start Sat Apr 11 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46737 * 2 1 4 4 H 1.09009 * 109.47195 * 304.99418 * 3 2 1 5 5 N 1.46496 * 109.47547 * 64.99851 * 3 2 1 6 6 C 1.34774 * 120.00126 * 275.00217 * 5 3 2 7 7 C 1.50700 * 120.00291 * 179.97438 * 6 5 3 8 8 O 1.21285 * 119.99951 * 359.97438 * 6 5 3 9 9 C 1.50703 * 109.47062 * 184.99974 * 3 2 1 10 10 O 1.21275 * 120.00106 * 239.99906 * 9 3 2 11 11 N 1.34779 * 119.99925 * 59.99602 * 9 3 2 12 12 C 1.46497 * 120.00149 * 179.97438 * 11 9 3 13 13 C 1.52996 * 109.47340 * 180.02562 * 12 11 9 14 14 H 1.09000 * 110.52387 * 307.79546 * 13 12 11 15 15 C 1.55061 * 110.58676 * 185.00022 * 13 12 11 16 16 C 1.55023 * 102.13348 * 204.93575 * 15 13 12 17 17 C 1.53324 * 103.78694 * 20.86322 * 16 15 13 18 18 C 1.52644 * 115.56381 * 133.64309 * 17 16 15 19 19 N 1.47229 * 87.78111 * 90.04653 * 18 17 16 20 20 C 1.36929 * 135.96928 * 206.41470 * 19 18 17 21 21 H 1.08006 * 119.99870 * 7.80348 * 20 19 18 22 22 C 1.38816 * 120.00238 * 187.80548 * 20 19 18 23 23 N 1.31613 * 119.99924 * 195.33338 * 22 20 19 24 24 Si 1.86798 * 119.99528 * 15.32917 * 22 20 19 25 25 H 1.48501 * 109.47162 * 269.99583 * 24 22 20 26 26 H 1.48507 * 109.46522 * 150.00004 * 24 22 20 27 27 H 1.48498 * 109.47295 * 30.00249 * 24 22 20 28 28 C 1.47221 * 88.06476 * 26.66859 * 19 18 17 29 29 O 1.42845 * 108.32768 * 1.60407 * 17 16 15 30 30 H 1.08995 * 109.47102 * 299.99749 * 1 2 3 31 31 H 1.08996 * 109.46914 * 60.00208 * 1 2 3 32 32 H 1.08999 * 109.46861 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47102 * 240.00251 * 2 1 3 34 34 H 1.08996 * 109.46914 * 119.99792 * 2 1 3 35 35 H 0.97003 * 119.99899 * 94.99231 * 5 3 2 36 36 H 1.09000 * 109.47004 * 89.99435 * 7 6 5 37 37 H 1.08997 * 109.47442 * 210.00196 * 7 6 5 38 38 H 1.08996 * 109.46997 * 330.00533 * 7 6 5 39 39 H 0.97007 * 120.00114 * 0.02562 * 11 9 3 40 40 H 1.08997 * 109.46946 * 60.00254 * 12 11 9 41 41 H 1.08999 * 109.47092 * 300.00525 * 12 11 9 42 42 H 1.09000 * 110.87112 * 86.77724 * 15 13 12 43 43 H 1.08998 * 111.04731 * 323.17844 * 15 13 12 44 44 H 1.09001 * 110.56238 * 262.28898 * 16 15 13 45 45 H 1.08995 * 110.69137 * 139.49727 * 16 15 13 46 46 H 1.09001 * 113.50036 * 335.32317 * 18 17 16 47 47 H 1.09001 * 113.56148 * 204.78134 * 18 17 16 48 48 H 0.97000 * 120.00254 * 354.90242 * 23 22 20 49 49 H 1.08998 * 113.49938 * 88.05938 * 28 19 18 50 50 H 1.08996 * 113.50607 * 218.60684 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 7 1.6524 2.0976 1.2517 6 6 0.4351 2.6644 1.3669 7 6 0.0361 3.3378 2.6547 8 8 -0.3394 2.6326 0.4340 9 6 3.5419 1.4444 -0.1238 10 8 4.2216 1.9437 0.7477 11 7 4.1298 0.8912 -1.2031 12 6 5.5898 0.8935 -1.3238 13 6 5.9945 0.2099 -2.6313 14 1 5.5255 -0.7708 -2.7109 15 6 7.5372 0.0858 -2.7268 16 6 7.7641 0.0142 -4.2587 17 6 6.4868 0.6259 -4.8462 18 6 6.6982 1.6526 -5.9558 19 7 6.6366 0.5404 -6.9184 20 6 7.1311 0.2942 -8.1713 21 1 7.8330 0.9819 -8.6195 22 6 6.7304 -0.8392 -8.8654 23 7 7.4109 -1.2413 -9.9178 24 14 5.2255 -1.7937 -8.3056 25 1 5.6353 -2.8378 -7.3323 26 1 4.5822 -2.4366 -9.4796 27 1 4.2626 -0.8657 -7.6600 28 6 5.8050 -0.1888 -5.9467 29 8 5.6473 1.0365 -3.7659 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2719 2.1232 1.9977 36 1 0.3212 4.3892 2.6184 37 1 -1.0428 3.2582 2.7873 38 1 0.5416 2.8530 3.4899 39 1 3.5861 0.4921 -1.9004 40 1 6.0247 0.3548 -0.4820 41 1 5.9527 1.9213 -1.3241 42 1 7.8844 -0.8255 -2.2399 43 1 8.0275 0.9618 -2.3021 44 1 7.8763 -1.0209 -4.5812 45 1 8.6367 0.6005 -4.5466 46 1 7.6722 2.1403 -5.9169 47 1 5.8756 2.3607 -6.0566 48 1 8.1472 -0.7060 -10.2528 49 1 4.7394 0.0189 -6.0443 50 1 6.0251 -1.2553 -5.8999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755055863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:11 Heat of formation + Delta-G solvation = -88.289615 kcal Electronic energy + Delta-G solvation = -30105.592696 eV Core-core repulsion = 25940.687479 eV Total energy + Delta-G solvation = -4164.905216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.73855 -41.42526 -40.14313 -38.42998 -36.42299 -35.85584 -34.50199 -33.61092 -33.09329 -31.05392 -30.56470 -29.12655 -27.58726 -27.14490 -24.93042 -23.27838 -23.04506 -22.37135 -21.67182 -21.27386 -20.75657 -19.49021 -18.85299 -18.06321 -17.61389 -17.43379 -17.09713 -16.89718 -16.44444 -16.20112 -16.06348 -15.86579 -15.39242 -15.22524 -15.01900 -14.83918 -14.55826 -14.41605 -14.14259 -13.75365 -13.53347 -13.38328 -13.31723 -13.19684 -13.09482 -12.87417 -12.67920 -12.60821 -12.48698 -12.44459 -12.25756 -12.04877 -11.88445 -11.76742 -11.46395 -11.38169 -11.02619 -10.92485 -10.88441 -10.37702 -10.21641 -10.09958 -9.29490 -8.65293 -5.50215 1.37360 1.42798 1.50588 1.62528 1.65306 1.82431 2.42171 2.50993 2.58219 3.06162 3.16005 3.41097 3.48383 3.60335 3.65886 3.84349 3.92424 3.95696 4.03443 4.12269 4.35101 4.39869 4.45783 4.48717 4.50822 4.57673 4.62360 4.63107 4.67038 4.68988 4.82107 4.82854 4.84097 4.93012 5.00099 5.00498 5.05707 5.11312 5.12663 5.14481 5.24643 5.32257 5.35378 5.43139 5.91966 6.02442 6.37570 6.52788 6.66432 7.03917 7.23692 7.28670 8.23039 8.86427 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.002365 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.452386 B =11835.535421 C =12717.748274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.127 3.873 4 H 0.103 0.897 5 N -0.708 5.708 6 C 0.507 3.493 7 C -0.166 4.166 8 O -0.582 6.582 9 C 0.517 3.483 10 O -0.568 6.568 11 N -0.712 5.712 12 C 0.134 3.866 13 C 0.059 3.941 14 H 0.095 0.905 15 C -0.133 4.133 16 C -0.116 4.116 17 C 0.088 3.912 18 C 0.121 3.879 19 N -0.645 5.645 20 C -0.290 4.290 21 H 0.051 0.949 22 C -0.081 4.081 23 N -0.964 5.964 24 Si 1.099 2.901 25 H -0.270 1.270 26 H -0.302 1.302 27 H -0.259 1.259 28 C 0.085 3.915 29 O -0.364 6.364 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.416 0.584 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.415 0.585 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.045 0.955 48 H 0.247 0.753 49 H 0.053 0.947 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.328 2.602 31.035 32.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.018 3.982 4 H 0.121 0.879 5 N -0.363 5.363 6 C 0.296 3.704 7 C -0.225 4.225 8 O -0.462 6.462 9 C 0.303 3.697 10 O -0.448 6.448 11 N -0.363 5.363 12 C 0.011 3.989 13 C 0.002 3.998 14 H 0.113 0.887 15 C -0.170 4.170 16 C -0.154 4.154 17 C 0.047 3.953 18 C -0.005 4.005 19 N -0.374 5.374 20 C -0.418 4.418 21 H 0.069 0.931 22 C -0.273 4.273 23 N -0.609 5.609 24 Si 0.924 3.076 25 H -0.196 1.196 26 H -0.230 1.230 27 H -0.184 1.184 28 C -0.040 4.040 29 O -0.282 6.282 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.254 0.746 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.251 0.749 40 H 0.120 0.880 41 H 0.084 0.916 42 H 0.129 0.871 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.323 1.750 30.482 32.564 hybrid contribution 1.358 1.509 -0.949 2.241 sum -9.964 3.259 29.534 31.339 Atomic orbital electron populations 1.21733 0.94653 1.01377 1.01936 1.21899 0.97077 0.92894 1.04271 1.20846 0.90357 0.96756 0.90221 0.87889 1.45864 1.17190 1.57308 1.15907 1.21485 0.80575 0.77214 0.91123 1.21900 1.04685 1.02545 0.93354 1.90737 1.52359 1.60378 1.42764 1.20676 0.90281 0.77146 0.81644 1.90683 1.65894 1.46717 1.41477 1.45875 1.08257 1.59396 1.22788 1.21430 0.79864 1.01737 0.95860 1.23626 0.95969 0.94763 0.85472 0.88717 1.23132 0.94295 1.05166 0.94447 1.22395 0.95660 1.01672 0.95667 1.23118 0.91026 0.95266 0.85878 1.22571 0.99520 0.91782 0.86612 1.45930 1.59636 1.16706 1.15177 1.19925 1.20836 1.09241 0.91775 0.93110 1.27068 1.05452 0.98450 0.96363 1.71009 1.22987 1.38442 1.28478 0.83335 0.73732 0.75465 0.75031 1.19631 1.23005 1.18415 1.23296 0.95572 0.97029 0.88100 1.88765 1.59991 1.58931 1.20508 0.93460 0.93505 0.91832 0.88924 0.90232 0.74587 0.87652 0.88534 0.87683 0.74858 0.88004 0.91608 0.87144 0.89122 0.90666 0.90520 0.92693 0.93773 0.94321 0.92944 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.52 71.98 0.61 -1.57 16 2 C -0.12 -1.54 5.55 30.60 0.17 -1.37 16 3 C 0.13 2.02 2.67 44.25 0.12 2.14 16 4 H 0.10 1.95 7.58 -2.38 -0.02 1.93 16 5 N -0.71 -10.36 4.90 -446.08 -2.19 -12.55 16 6 C 0.51 8.24 6.51 87.66 0.57 8.81 16 7 C -0.17 -1.28 10.30 71.24 0.73 -0.54 16 8 O -0.58 -14.20 14.24 -3.05 -0.04 -14.24 16 9 C 0.52 9.32 7.22 87.66 0.63 9.95 16 10 O -0.57 -13.32 15.84 -3.01 -0.05 -13.37 16 11 N -0.71 -11.16 5.42 -463.08 -2.51 -13.67 16 12 C 0.13 2.17 5.41 86.38 0.47 2.64 16 13 C 0.06 1.07 3.38 31.30 0.11 1.18 16 14 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 15 C -0.13 -2.28 6.60 31.99 0.21 -2.07 16 16 C -0.12 -3.10 6.46 31.40 0.20 -2.90 16 17 C 0.09 2.85 1.66 -10.82 -0.02 2.83 16 18 C 0.12 4.75 8.20 83.40 0.68 5.43 16 19 N -0.64 -31.17 3.58 -739.06 -2.65 -33.82 16 20 C -0.29 -16.89 11.03 84.04 0.93 -15.96 16 21 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 22 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 23 N -0.96 -61.97 13.70 21.65 0.30 -61.67 16 24 Si 1.10 52.71 25.51 68.60 1.75 54.46 16 25 H -0.27 -11.83 6.97 99.48 0.69 -11.13 16 26 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 27 H -0.26 -11.35 5.65 99.48 0.56 -10.79 16 28 C 0.09 3.39 5.12 83.50 0.43 3.82 16 29 O -0.36 -9.82 11.02 -148.98 -1.64 -11.47 16 30 H 0.05 0.84 5.65 -2.39 -0.01 0.82 16 31 H 0.05 0.90 7.85 -2.39 -0.02 0.88 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 0.89 7.43 -2.39 -0.02 0.88 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.42 5.06 7.79 -92.71 -0.72 4.33 16 36 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.41 5.45 7.83 -92.70 -0.73 4.73 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.09 1.41 8.05 -2.39 -0.02 1.39 16 44 H 0.07 2.12 7.82 -2.39 -0.02 2.10 16 45 H 0.08 2.14 7.81 -2.39 -0.02 2.12 16 46 H 0.05 2.08 7.91 -2.39 -0.02 2.06 16 47 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.25 15.98 8.73 -92.71 -0.81 15.17 16 49 H 0.05 2.09 6.98 -2.39 -0.02 2.08 16 50 H 0.05 2.15 6.08 -2.39 -0.01 2.13 16 Total: -1.00 -78.75 395.07 -1.41 -80.16 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -0.69 Total: 18.12 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 6.31 Total: 8.04 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -7.05 Total: -121.70 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -1.73 Total: -39.08 kcal Atomic # 14 Polarization: 52.71 SS G_CDS: 1.75 Total: 54.46 kcal Total: -78.75 -1.41 -80.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755055863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.128 kcal (2) G-P(sol) polarization free energy of solvation -78.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds