Wall clock time and date at job start Sat Apr 11 2020 05:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46809 * 2 1 4 4 N 1.46494 * 109.47240 * 119.99744 * 2 1 3 5 5 C 1.34776 * 119.99872 * 85.00585 * 4 2 1 6 6 O 1.21585 * 119.99940 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99912 * 180.02562 * 5 4 2 8 8 C 1.47022 * 125.64972 * 359.93708 * 7 5 4 9 9 C 1.54321 * 107.27033 * 178.98734 * 8 7 5 10 10 C 1.55152 * 102.94702 * 337.81476 * 9 8 7 11 11 C 1.47422 * 125.64725 * 180.02562 * 7 5 4 12 12 H 1.09000 * 110.46107 * 85.19032 * 11 7 5 13 13 C 1.50700 * 110.36753 * 322.91467 * 11 7 5 14 14 O 1.21284 * 119.99625 * 344.59459 * 13 11 7 15 15 N 1.34771 * 120.00317 * 164.59229 * 13 11 7 16 16 C 1.47429 * 125.64671 * 0.02625 * 15 13 11 17 17 C 1.54911 * 104.83226 * 155.82667 * 16 15 13 18 18 C 1.55164 * 101.58264 * 37.00714 * 17 16 15 19 19 O 1.42904 * 110.71506 * 83.03834 * 18 17 16 20 20 C 1.50696 * 110.71917 * 206.13602 * 18 17 16 21 21 H 1.08003 * 120.00087 * 118.54884 * 20 18 17 22 22 C 1.37875 * 119.99956 * 298.54297 * 20 18 17 23 23 N 1.31510 * 120.00308 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 119.99908 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46845 * 60.00735 * 24 22 20 26 26 H 1.48503 * 109.47399 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47295 * 300.00832 * 24 22 20 28 28 C 1.47027 * 125.64893 * 179.97438 * 15 13 11 29 29 H 1.08994 * 109.47311 * 299.99916 * 1 2 3 30 30 H 1.08999 * 109.47240 * 60.00248 * 1 2 3 31 31 H 1.08999 * 109.46830 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46990 * 240.00463 * 2 1 3 33 33 H 1.08999 * 109.47158 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47017 * 299.99889 * 3 2 1 35 35 H 1.08994 * 109.47115 * 59.99964 * 3 2 1 36 36 H 0.97002 * 119.99917 * 265.00097 * 4 2 1 37 37 H 1.09001 * 109.87767 * 59.57819 * 8 7 5 38 38 H 1.08998 * 109.88446 * 298.41300 * 8 7 5 39 39 H 1.08998 * 110.71937 * 219.44626 * 9 8 7 40 40 H 1.09003 * 110.86811 * 96.24892 * 9 8 7 41 41 H 1.09005 * 111.00077 * 277.42882 * 10 9 8 42 42 H 1.08994 * 111.00876 * 153.57723 * 10 9 8 43 43 H 1.08998 * 110.36366 * 36.98682 * 16 15 13 44 44 H 1.08998 * 110.45625 * 274.70936 * 16 15 13 45 45 H 1.09003 * 111.00083 * 278.93798 * 17 16 15 46 46 H 1.08993 * 111.04077 * 155.09638 * 17 16 15 47 47 H 0.96705 * 113.99671 * 63.84856 * 19 18 17 48 48 H 0.97000 * 119.99806 * 0.02562 * 23 22 20 49 49 H 1.09001 * 109.88127 * 61.69015 * 28 15 13 50 50 H 1.09002 * 109.88222 * 300.52086 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1472 -2.0321 1.1943 6 8 1.8577 -2.6693 0.2001 7 7 2.5960 -2.6675 2.2950 8 6 2.9804 -2.0233 3.5594 9 6 3.4032 -3.1427 4.5339 10 6 2.6959 -4.3952 3.9525 11 6 2.7845 -4.1234 2.4298 12 1 3.7620 -4.4180 2.0479 13 6 1.6928 -4.8633 1.7006 14 8 0.6875 -4.2776 1.3582 15 7 1.8336 -6.1759 1.4290 16 6 2.9976 -7.0072 1.7863 17 6 2.4489 -8.4548 1.8418 18 6 1.4285 -8.4463 0.6729 19 8 2.0861 -8.6822 -0.5737 20 6 0.3449 -9.4678 0.9037 21 1 -0.6839 -9.1523 0.9955 22 6 0.6669 -10.8051 0.9976 23 7 1.9197 -11.1893 0.8862 24 14 -0.6764 -12.0714 1.2830 25 1 -1.6545 -12.0154 0.1670 26 1 -0.0736 -13.4271 1.3458 27 1 -1.3691 -11.7783 2.5634 28 6 0.8514 -7.0161 0.7282 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4427 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.2491 -0.1822 1.9894 37 1 2.1316 -1.4759 3.9695 38 1 3.8157 -1.3437 3.3904 39 1 3.0465 -2.9314 5.5420 40 1 4.4853 -3.2736 4.5289 41 1 1.6577 -4.4453 4.2809 42 1 3.2326 -5.3058 4.2186 43 1 3.3897 -6.7124 2.7596 44 1 3.7730 -6.9244 1.0247 45 1 1.9521 -8.6480 2.7927 46 1 3.2418 -9.1809 1.6630 47 1 2.4991 -9.5539 -0.6418 48 1 2.6173 -10.5317 0.7384 49 1 0.6960 -6.6397 -0.2829 50 1 -0.0918 -7.0178 1.2746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846033.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:06 Heat of formation + Delta-G solvation = -100.463237 kcal Electronic energy + Delta-G solvation = -31552.675613 eV Core-core repulsion = 27387.242509 eV Total energy + Delta-G solvation = -4165.433104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.70684 -39.19858 -37.95323 -36.92709 -35.75055 -34.56257 -32.39587 -32.22408 -30.59371 -30.22414 -29.16860 -28.12922 -27.36278 -24.88749 -24.00622 -22.75267 -21.74262 -21.35677 -20.31384 -19.68319 -19.04370 -17.96961 -17.67658 -17.27426 -16.19877 -15.61523 -15.47673 -15.12600 -14.85210 -14.53394 -14.16155 -14.06018 -14.00841 -13.82509 -13.73650 -13.33759 -13.07397 -12.89423 -12.58107 -12.51442 -12.37259 -12.24403 -12.07136 -11.94034 -11.68197 -11.57521 -11.50266 -11.41939 -11.15528 -11.05638 -11.02532 -10.81711 -10.55541 -10.48060 -10.15692 -9.87136 -9.38088 -9.30835 -9.02728 -8.61372 -8.51093 -8.18019 -7.93407 -6.54791 -4.36098 2.46414 3.14875 3.35321 3.37462 3.38731 3.56270 3.57840 3.96496 4.28145 4.37968 4.39509 4.64508 4.70546 4.86800 4.90289 5.02240 5.04029 5.07751 5.12367 5.32919 5.37027 5.40419 5.46420 5.53295 5.56268 5.62029 5.63073 5.66711 5.72928 5.78573 5.84023 5.88937 5.92495 6.02373 6.18214 6.24972 6.37349 6.58348 6.60816 6.77863 6.86009 6.97042 7.01127 7.09471 7.83411 8.02189 8.13818 8.22564 8.58576 8.68988 8.86174 8.99678 9.35473 10.75837 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018274 B = 0.002901 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.892548 B = 9650.010093 C =10431.864039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.156 3.844 3 C -0.158 4.158 4 N -0.743 5.743 5 C 0.723 3.277 6 O -0.554 6.554 7 N -0.625 5.625 8 C 0.102 3.898 9 C -0.127 4.127 10 C -0.123 4.123 11 C 0.142 3.858 12 H 0.091 0.909 13 C 0.522 3.478 14 O -0.515 6.515 15 N -0.611 5.611 16 C 0.098 3.902 17 C -0.150 4.150 18 C 0.228 3.772 19 O -0.584 6.584 20 C -0.609 4.609 21 H 0.059 0.941 22 C 0.031 3.969 23 N -0.908 5.908 24 Si 1.072 2.928 25 H -0.285 1.285 26 H -0.281 1.281 27 H -0.286 1.286 28 C 0.136 3.864 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.390 0.610 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.370 0.630 48 H 0.267 0.733 49 H 0.060 0.940 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 20.816 8.423 23.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 C -0.216 4.216 4 N -0.400 5.400 5 C 0.425 3.575 6 O -0.427 6.427 7 N -0.365 5.365 8 C -0.021 4.021 9 C -0.165 4.165 10 C -0.161 4.161 11 C 0.034 3.966 12 H 0.109 0.891 13 C 0.308 3.692 14 O -0.390 6.390 15 N -0.346 5.346 16 C -0.025 4.025 17 C -0.189 4.189 18 C 0.188 3.812 19 O -0.392 6.392 20 C -0.648 4.648 21 H 0.077 0.923 22 C -0.174 4.174 23 N -0.548 5.548 24 Si 0.899 3.101 25 H -0.212 1.212 26 H -0.206 1.206 27 H -0.212 1.212 28 C 0.014 3.986 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.223 0.777 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.220 0.780 48 H 0.081 0.919 49 H 0.078 0.922 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.996 19.807 7.442 21.741 hybrid contribution 0.660 1.342 0.396 1.547 sum 5.656 21.149 7.838 23.253 Atomic orbital electron populations 1.22205 0.95488 1.03209 1.01396 1.20744 0.94017 0.91934 0.88184 1.22071 1.01511 0.95281 1.02714 1.45182 1.72611 1.05135 1.17095 1.15347 0.78019 0.81616 0.82545 1.91018 1.54418 1.64864 1.32401 1.47294 1.70625 1.05907 1.12709 1.21965 0.99497 0.96186 0.84459 1.22598 1.01196 0.93912 0.98778 1.22783 1.02712 0.98944 0.91704 1.21588 0.98103 0.80505 0.96383 0.89098 1.19860 0.88303 0.80671 0.80362 1.90701 1.30531 1.65972 1.51790 1.48469 1.20705 1.07879 1.57552 1.22417 0.88734 0.92556 0.98785 1.23539 1.00337 0.92879 1.02115 1.19753 0.89681 0.91085 0.80639 1.86315 1.74928 1.39225 1.38776 1.22323 0.94492 0.93385 1.54569 0.92303 1.25928 1.00711 0.98223 0.92506 1.71000 1.00127 1.37877 1.45773 0.83486 0.74227 0.75620 0.76727 1.21164 1.20589 1.21237 1.21868 0.91162 0.89447 0.96142 0.92905 0.91949 0.91474 0.89536 0.92151 0.90937 0.92280 0.77688 0.91699 0.91514 0.89556 0.90072 0.89846 0.88760 0.92027 0.92050 0.90622 0.90421 0.78034 0.91857 0.92181 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.48 37.16 0.35 -1.53 16 2 C 0.16 1.73 3.18 -67.93 -0.22 1.51 16 3 C -0.16 -1.12 9.38 37.16 0.35 -0.77 16 4 N -0.74 -8.86 5.04 -58.67 -0.30 -9.16 16 5 C 0.72 11.94 7.70 -86.92 -0.67 11.27 16 6 O -0.55 -12.12 13.38 -18.78 -0.25 -12.37 16 7 N -0.63 -8.74 3.14 -170.02 -0.53 -9.27 16 8 C 0.10 0.88 6.15 -3.07 -0.02 0.86 16 9 C -0.13 -0.92 6.95 -24.90 -0.17 -1.09 16 10 C -0.12 -1.33 6.23 -24.57 -0.15 -1.48 16 11 C 0.14 2.11 2.76 -67.56 -0.19 1.93 16 12 H 0.09 1.28 7.80 -51.93 -0.41 0.87 16 13 C 0.52 10.63 6.27 -10.99 -0.07 10.56 16 14 O -0.52 -12.48 14.09 -18.52 -0.26 -12.74 16 15 N -0.61 -12.76 3.33 -170.51 -0.57 -13.33 16 16 C 0.10 1.78 6.46 -2.53 -0.02 1.76 16 17 C -0.15 -3.20 5.40 -24.58 -0.13 -3.33 16 18 C 0.23 5.67 0.81 -89.93 -0.07 5.59 16 19 O -0.58 -15.06 13.09 -35.23 -0.46 -15.52 16 20 C -0.61 -16.51 8.21 -34.44 -0.28 -16.79 16 21 H 0.06 1.62 7.57 -52.48 -0.40 1.22 16 22 C 0.03 0.82 5.26 -17.82 -0.09 0.72 16 23 N -0.91 -24.69 12.96 55.43 0.72 -23.97 16 24 Si 1.07 24.00 29.90 -169.99 -5.08 18.91 16 25 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 27 H -0.29 -6.15 7.11 56.52 0.40 -5.74 16 28 C 0.14 3.28 6.22 -3.06 -0.02 3.26 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.39 3.40 7.59 -40.82 -0.31 3.09 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 1.01 8.05 -51.93 -0.42 0.60 16 42 H 0.09 0.89 6.94 -51.93 -0.36 0.53 16 43 H 0.06 0.88 6.26 -51.93 -0.33 0.56 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.08 1.65 8.04 -51.93 -0.42 1.23 16 46 H 0.08 1.67 6.46 -51.93 -0.34 1.33 16 47 H 0.37 9.28 6.54 45.56 0.30 9.57 16 48 H 0.27 6.99 3.67 -40.82 -0.15 6.84 16 49 H 0.06 1.57 8.07 -51.93 -0.42 1.15 16 50 H 0.07 1.76 7.66 -51.93 -0.40 1.37 16 LS Contribution 388.54 15.07 5.86 5.86 Total: -1.00 -35.99 388.54 -9.76 -45.75 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -7.48 Total: 13.37 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: -1.40 Total: 12.47 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.68 Total: -55.73 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.97 Total: -40.64 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.08 Total: 18.91 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.99 -9.76 -45.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846033.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.710 kcal (2) G-P(sol) polarization free energy of solvation -35.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds