Wall clock time and date at job start Sat Apr 11 2020 05:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46809 * 2 1 4 4 N 1.46494 * 109.47240 * 119.99744 * 2 1 3 5 5 C 1.34776 * 119.99872 * 85.00585 * 4 2 1 6 6 O 1.21585 * 119.99940 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99912 * 180.02562 * 5 4 2 8 8 C 1.47022 * 125.64972 * 359.93708 * 7 5 4 9 9 C 1.54321 * 107.27033 * 178.98734 * 8 7 5 10 10 C 1.55152 * 102.94702 * 337.81476 * 9 8 7 11 11 C 1.47422 * 125.64725 * 180.02562 * 7 5 4 12 12 H 1.09000 * 110.46107 * 85.19032 * 11 7 5 13 13 C 1.50700 * 110.36753 * 322.91467 * 11 7 5 14 14 O 1.21284 * 119.99625 * 344.59459 * 13 11 7 15 15 N 1.34771 * 120.00317 * 164.59229 * 13 11 7 16 16 C 1.47429 * 125.64671 * 0.02625 * 15 13 11 17 17 C 1.54911 * 104.83226 * 155.82667 * 16 15 13 18 18 C 1.55164 * 101.58264 * 37.00714 * 17 16 15 19 19 O 1.42904 * 110.71506 * 83.03834 * 18 17 16 20 20 C 1.50696 * 110.71917 * 206.13602 * 18 17 16 21 21 H 1.08003 * 120.00087 * 118.54884 * 20 18 17 22 22 C 1.37875 * 119.99956 * 298.54297 * 20 18 17 23 23 N 1.31510 * 120.00308 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 119.99908 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46845 * 60.00735 * 24 22 20 26 26 H 1.48503 * 109.47399 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47295 * 300.00832 * 24 22 20 28 28 C 1.47027 * 125.64893 * 179.97438 * 15 13 11 29 29 H 1.08994 * 109.47311 * 299.99916 * 1 2 3 30 30 H 1.08999 * 109.47240 * 60.00248 * 1 2 3 31 31 H 1.08999 * 109.46830 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46990 * 240.00463 * 2 1 3 33 33 H 1.08999 * 109.47158 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47017 * 299.99889 * 3 2 1 35 35 H 1.08994 * 109.47115 * 59.99964 * 3 2 1 36 36 H 0.97002 * 119.99917 * 265.00097 * 4 2 1 37 37 H 1.09001 * 109.87767 * 59.57819 * 8 7 5 38 38 H 1.08998 * 109.88446 * 298.41300 * 8 7 5 39 39 H 1.08998 * 110.71937 * 219.44626 * 9 8 7 40 40 H 1.09003 * 110.86811 * 96.24892 * 9 8 7 41 41 H 1.09005 * 111.00077 * 277.42882 * 10 9 8 42 42 H 1.08994 * 111.00876 * 153.57723 * 10 9 8 43 43 H 1.08998 * 110.36366 * 36.98682 * 16 15 13 44 44 H 1.08998 * 110.45625 * 274.70936 * 16 15 13 45 45 H 1.09003 * 111.00083 * 278.93798 * 17 16 15 46 46 H 1.08993 * 111.04077 * 155.09638 * 17 16 15 47 47 H 0.96705 * 113.99671 * 63.84856 * 19 18 17 48 48 H 0.97000 * 119.99806 * 0.02562 * 23 22 20 49 49 H 1.09001 * 109.88127 * 61.69015 * 28 15 13 50 50 H 1.09002 * 109.88222 * 300.52086 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1472 -2.0321 1.1943 6 8 1.8577 -2.6693 0.2001 7 7 2.5960 -2.6675 2.2950 8 6 2.9804 -2.0233 3.5594 9 6 3.4032 -3.1427 4.5339 10 6 2.6959 -4.3952 3.9525 11 6 2.7845 -4.1234 2.4298 12 1 3.7620 -4.4180 2.0479 13 6 1.6928 -4.8633 1.7006 14 8 0.6875 -4.2776 1.3582 15 7 1.8336 -6.1759 1.4290 16 6 2.9976 -7.0072 1.7863 17 6 2.4489 -8.4548 1.8418 18 6 1.4285 -8.4463 0.6729 19 8 2.0861 -8.6822 -0.5737 20 6 0.3449 -9.4678 0.9037 21 1 -0.6839 -9.1523 0.9955 22 6 0.6669 -10.8051 0.9976 23 7 1.9197 -11.1893 0.8862 24 14 -0.6764 -12.0714 1.2830 25 1 -1.6545 -12.0154 0.1670 26 1 -0.0736 -13.4271 1.3458 27 1 -1.3691 -11.7783 2.5634 28 6 0.8514 -7.0161 0.7282 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4427 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.2491 -0.1822 1.9894 37 1 2.1316 -1.4759 3.9695 38 1 3.8157 -1.3437 3.3904 39 1 3.0465 -2.9314 5.5420 40 1 4.4853 -3.2736 4.5289 41 1 1.6577 -4.4453 4.2809 42 1 3.2326 -5.3058 4.2186 43 1 3.3897 -6.7124 2.7596 44 1 3.7730 -6.9244 1.0247 45 1 1.9521 -8.6480 2.7927 46 1 3.2418 -9.1809 1.6630 47 1 2.4991 -9.5539 -0.6418 48 1 2.6173 -10.5317 0.7384 49 1 0.6960 -6.6397 -0.2829 50 1 -0.0918 -7.0178 1.2746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846033.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:05 Heat of formation + Delta-G solvation = -127.493818 kcal Electronic energy + Delta-G solvation = -31553.847747 eV Core-core repulsion = 27387.242509 eV Total energy + Delta-G solvation = -4166.605238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.95086 -40.74281 -39.38740 -38.31516 -36.87473 -36.40381 -34.30857 -33.45248 -31.82623 -31.41692 -30.66424 -29.70898 -28.13643 -26.70314 -25.24664 -24.27356 -22.54176 -22.50810 -21.69729 -21.25282 -20.36085 -19.97156 -19.03854 -18.48060 -17.47802 -17.21716 -16.79536 -16.47869 -16.15343 -15.93495 -15.72555 -15.69291 -15.25042 -15.07746 -14.94017 -14.55217 -14.38944 -14.10374 -13.89031 -13.76907 -13.57870 -13.55814 -13.37847 -13.11292 -13.07872 -12.98749 -12.75219 -12.59449 -12.49411 -12.35586 -12.33506 -12.18209 -11.94891 -11.92983 -11.73857 -11.30634 -11.22200 -10.88126 -10.63107 -10.20680 -10.17861 -9.70152 -9.55337 -8.67703 -6.51250 1.37222 1.54732 1.59349 1.66190 1.81133 1.94584 2.26613 2.50772 2.96709 3.02774 3.33890 3.50293 3.56198 3.67967 3.78165 3.90745 3.99899 4.04680 4.12243 4.13028 4.21716 4.28065 4.38392 4.39805 4.49452 4.66432 4.68647 4.68895 4.70594 4.78874 4.82895 4.89194 4.93179 4.96880 5.04585 5.10202 5.12421 5.19113 5.20897 5.23752 5.28523 5.32361 5.61633 5.80183 5.98861 6.02409 6.47270 6.55770 6.96866 7.01555 7.15084 7.26106 7.65240 8.64978 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018274 B = 0.002901 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.892548 B = 9650.010093 C =10431.864039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 C -0.144 4.144 4 N -0.726 5.726 5 C 0.710 3.290 6 O -0.621 6.621 7 N -0.629 5.629 8 C 0.092 3.908 9 C -0.111 4.111 10 C -0.120 4.120 11 C 0.142 3.858 12 H 0.105 0.895 13 C 0.511 3.489 14 O -0.564 6.564 15 N -0.615 5.615 16 C 0.106 3.894 17 C -0.137 4.137 18 C 0.216 3.784 19 O -0.595 6.595 20 C -0.635 4.635 21 H 0.041 0.959 22 C -0.004 4.004 23 N -0.917 5.917 24 Si 1.114 2.886 25 H -0.282 1.282 26 H -0.275 1.275 27 H -0.271 1.271 28 C 0.143 3.857 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.014 0.986 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.409 0.591 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.371 0.629 48 H 0.267 0.733 49 H 0.024 0.976 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 22.692 11.501 26.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 C -0.202 4.202 4 N -0.383 5.383 5 C 0.412 3.588 6 O -0.499 6.499 7 N -0.369 5.369 8 C -0.029 4.029 9 C -0.148 4.148 10 C -0.158 4.158 11 C 0.034 3.966 12 H 0.123 0.877 13 C 0.300 3.700 14 O -0.441 6.441 15 N -0.350 5.350 16 C -0.016 4.016 17 C -0.176 4.176 18 C 0.176 3.824 19 O -0.404 6.404 20 C -0.673 4.673 21 H 0.060 0.940 22 C -0.205 4.205 23 N -0.558 5.558 24 Si 0.936 3.064 25 H -0.208 1.208 26 H -0.200 1.200 27 H -0.197 1.197 28 C 0.019 3.981 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.246 0.754 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.221 0.779 48 H 0.081 0.919 49 H 0.043 0.957 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.202 21.749 10.596 25.242 hybrid contribution -0.057 0.806 -0.628 1.023 sum 7.145 22.555 9.968 25.673 Atomic orbital electron populations 1.22150 0.96011 1.00261 1.03230 1.20859 0.93639 0.94105 0.86785 1.21982 1.01886 0.91946 1.04356 1.45039 1.71475 1.03720 1.18086 1.15766 0.77847 0.82719 0.82450 1.90971 1.57262 1.66541 1.35172 1.47446 1.69868 1.05800 1.13752 1.22382 1.01027 0.97134 0.82323 1.22653 1.02305 0.90704 0.99180 1.22853 1.02676 1.01945 0.88326 1.21770 0.95797 0.80605 0.98423 0.87710 1.21086 0.89152 0.80146 0.79591 1.90672 1.33000 1.66809 1.53637 1.48586 1.20662 1.08434 1.57313 1.22519 0.87487 0.89899 1.01658 1.23316 0.99162 0.95220 0.99931 1.19885 0.90496 0.90524 0.81463 1.86298 1.75006 1.39262 1.39790 1.22547 0.94418 0.94692 1.55657 0.94027 1.27093 1.02009 0.99737 0.91627 1.71057 1.00486 1.38041 1.46172 0.82941 0.72280 0.73783 0.77386 1.20760 1.20027 1.19655 1.21535 0.91886 0.90175 0.94490 0.91063 0.90111 0.96650 0.92821 0.91410 0.89671 0.90218 0.75439 0.90720 0.88525 0.86926 0.87583 0.91648 0.86623 0.86914 0.91531 0.91077 0.90331 0.77937 0.91930 0.95704 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 9.48 71.98 0.68 -3.04 16 2 C 0.15 3.35 3.18 45.00 0.14 3.49 16 3 C -0.14 -1.68 9.38 71.99 0.68 -1.01 16 4 N -0.73 -16.84 5.04 -457.81 -2.31 -19.15 16 5 C 0.71 23.91 7.70 179.05 1.38 25.29 16 6 O -0.62 -29.03 13.38 19.03 0.25 -28.78 16 7 N -0.63 -16.78 3.14 -810.09 -2.55 -19.33 16 8 C 0.09 1.24 6.15 86.73 0.53 1.77 16 9 C -0.11 -1.04 6.95 31.78 0.22 -0.82 16 10 C -0.12 -2.19 6.23 31.99 0.20 -1.99 16 11 C 0.14 4.03 2.76 44.73 0.12 4.15 16 12 H 0.11 2.69 7.80 -2.39 -0.02 2.67 16 13 C 0.51 21.44 6.27 87.66 0.55 21.99 16 14 O -0.56 -29.10 14.09 19.97 0.28 -28.82 16 15 N -0.62 -26.39 3.33 -811.77 -2.70 -29.09 16 16 C 0.11 3.72 6.46 86.85 0.56 4.28 16 17 C -0.14 -5.85 5.40 31.99 0.17 -5.68 16 18 C 0.22 11.11 0.81 -10.35 -0.01 11.10 16 19 O -0.59 -31.83 13.09 -148.98 -1.95 -33.78 16 20 C -0.64 -35.57 8.21 25.60 0.21 -35.36 16 21 H 0.04 2.40 7.57 -2.91 -0.02 2.38 16 22 C 0.00 -0.20 5.26 84.65 0.45 0.25 16 23 N -0.92 -49.95 12.96 21.45 0.28 -49.67 16 24 Si 1.11 48.43 29.90 68.60 2.05 50.48 16 25 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 28 C 0.14 7.35 6.22 86.73 0.54 7.89 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 1.55 7.58 -2.39 -0.02 1.53 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.41 6.12 7.59 -92.71 -0.70 5.41 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 1.46 8.05 -2.38 -0.02 1.44 16 42 H 0.12 1.63 6.94 -2.39 -0.02 1.61 16 43 H 0.11 2.82 6.26 -2.39 -0.01 2.80 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.07 3.07 8.04 -2.39 -0.02 3.05 16 46 H 0.08 3.32 6.46 -2.39 -0.02 3.31 16 47 H 0.37 19.16 6.54 -74.05 -0.48 18.67 16 48 H 0.27 14.04 3.67 -92.71 -0.34 13.70 16 49 H 0.02 1.41 8.07 -2.39 -0.02 1.39 16 50 H 0.05 2.91 7.66 -2.39 -0.02 2.90 16 Total: -1.00 -87.09 388.54 -0.01 -87.10 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: 0.20 Total: 38.74 kcal Atomic # 6 Polarization: 25.87 SS G_CDS: 6.43 Total: 32.30 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -7.27 Total: -117.24 kcal Atomic # 8 Polarization: -89.96 SS G_CDS: -1.41 Total: -91.38 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.05 Total: 50.48 kcal Total: -87.09 -0.01 -87.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846033.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.389 kcal (2) G-P(sol) polarization free energy of solvation -87.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds