Wall clock time and date at job start Sat Apr 11 2020 05:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47107 * 2 1 4 4 N 1.46494 * 109.47238 * 120.00160 * 2 1 3 5 5 C 1.34423 * 124.35008 * 299.99848 * 4 2 1 6 6 O 1.21280 * 124.94300 * 359.63288 * 5 4 2 7 7 C 1.51279 * 110.11675 * 179.59031 * 5 4 2 8 8 C 1.54633 * 104.19579 * 343.75008 * 7 5 4 9 9 C 1.46766 * 124.35372 * 119.99890 * 4 2 1 10 10 H 1.09001 * 110.32044 * 77.97344 * 9 4 2 11 11 C 1.50706 * 110.24124 * 316.02170 * 9 4 2 12 12 O 1.21277 * 119.99988 * 2.48975 * 11 9 4 13 13 N 1.34776 * 119.99672 * 182.49731 * 11 9 4 14 14 C 1.46499 * 120.00205 * 179.97438 * 13 11 9 15 15 C 1.52995 * 109.47724 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.50954 * 304.90009 * 15 14 13 17 17 C 1.52873 * 109.62717 * 184.90574 * 15 14 13 18 18 N 1.47154 * 108.60850 * 187.89903 * 17 15 14 19 19 C 1.36940 * 120.98160 * 230.50332 * 18 17 15 20 20 H 1.07997 * 119.99642 * 27.95089 * 19 18 17 21 21 C 1.38810 * 119.99873 * 207.95292 * 19 18 17 22 22 N 1.31621 * 119.99760 * 198.88561 * 21 19 18 23 23 Si 1.86799 * 119.99973 * 18.88895 * 21 19 18 24 24 H 1.48496 * 109.47102 * 273.12062 * 23 21 19 25 25 H 1.48500 * 109.47241 * 33.12534 * 23 21 19 26 26 H 1.48506 * 109.46942 * 153.11920 * 23 21 19 27 27 C 1.47151 * 118.03737 * 50.22474 * 18 17 15 28 28 C 1.53297 * 108.38574 * 309.71794 * 27 18 17 29 29 O 1.42968 * 109.22123 * 52.30199 * 28 27 18 30 30 H 1.09003 * 109.47094 * 300.00064 * 1 2 3 31 31 H 1.09006 * 109.47235 * 59.99724 * 1 2 3 32 32 H 1.08999 * 109.47190 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47094 * 239.99936 * 2 1 3 34 34 H 1.08993 * 109.47089 * 300.00278 * 3 2 1 35 35 H 1.08997 * 109.46894 * 60.00350 * 3 2 1 36 36 H 1.09001 * 109.47041 * 179.97438 * 3 2 1 37 37 H 1.09000 * 110.48882 * 225.07303 * 7 5 4 38 38 H 1.08997 * 110.60201 * 102.48300 * 7 5 4 39 39 H 1.08998 * 110.97071 * 266.67303 * 8 7 5 40 40 H 1.09004 * 110.99990 * 142.93367 * 8 7 5 41 41 H 0.97000 * 120.00018 * 359.97438 * 13 11 9 42 42 H 1.09003 * 109.46979 * 59.99491 * 14 13 11 43 43 H 1.09002 * 109.46810 * 299.99950 * 14 13 11 44 44 H 1.09003 * 109.62059 * 68.07602 * 17 15 14 45 45 H 1.08997 * 109.52529 * 307.65868 * 17 15 14 46 46 H 0.97000 * 119.99960 * 180.02562 * 22 21 19 47 47 H 1.08999 * 109.67922 * 69.43919 * 27 18 17 48 48 H 1.08994 * 109.68140 * 189.99727 * 27 18 17 49 49 H 1.08998 * 109.51607 * 172.22140 * 28 27 18 50 50 H 1.09002 * 109.51129 * 292.32854 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7480 -0.3083 2.4561 6 8 1.0755 0.6538 2.7610 7 6 2.4039 -1.2534 3.4386 8 6 2.7609 -2.4954 2.5895 9 6 2.8656 -1.8888 1.1727 10 1 3.8984 -1.6179 0.9537 11 6 2.3555 -2.8681 0.1470 12 8 1.4002 -2.5812 -0.5429 13 7 2.9609 -4.0628 -0.0034 14 6 2.4648 -5.0151 -1.0000 15 6 3.3227 -6.2815 -0.9668 16 1 4.3704 -6.0153 -1.1065 17 6 2.8862 -7.2269 -2.0861 18 7 3.5891 -8.5088 -1.9187 19 6 4.2577 -9.0879 -2.9641 20 1 4.6679 -8.4716 -3.7504 21 6 4.4081 -10.4670 -3.0132 22 7 5.3367 -11.0009 -3.7780 23 14 3.2925 -11.5650 -1.9938 24 1 3.8697 -11.7330 -0.6360 25 1 1.9485 -10.9424 -1.8868 26 1 3.1722 -12.8926 -2.6484 27 6 3.5575 -9.1471 -0.5932 28 6 3.9658 -8.1055 0.4548 29 8 3.1602 -6.9354 0.2942 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.7073 -1.5217 4.2329 38 1 3.3051 -0.8061 3.8579 39 1 1.9676 -3.2415 2.6368 40 1 3.7138 -2.9220 2.9027 41 1 3.7251 -4.2922 0.5483 42 1 2.5199 -4.5652 -1.9913 43 1 1.4296 -5.2710 -0.7742 44 1 3.1409 -6.7920 -3.0526 45 1 1.8098 -7.3881 -2.0277 46 1 5.4416 -11.9645 -3.8126 47 1 2.5498 -9.5048 -0.3820 48 1 4.2565 -9.9831 -0.5716 49 1 3.8165 -8.5159 1.4535 50 1 5.0161 -7.8465 0.3208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035483119.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:33 Heat of formation + Delta-G solvation = -107.154671 kcal Electronic energy + Delta-G solvation = -30704.710171 eV Core-core repulsion = 26538.986905 eV Total energy + Delta-G solvation = -4165.723266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.06987 -40.58317 -39.87222 -37.33490 -36.62678 -36.16537 -35.58580 -33.67578 -32.74839 -31.00151 -29.92413 -28.98856 -28.12052 -27.06472 -24.82647 -24.01504 -23.39935 -23.22915 -21.95101 -21.29918 -19.87651 -18.97730 -18.49188 -18.04566 -17.63354 -17.26486 -17.07618 -16.77465 -16.17028 -16.04264 -15.80569 -15.78338 -15.46403 -15.26794 -15.05188 -14.82212 -14.65524 -14.50337 -14.23797 -13.99468 -13.81578 -13.64094 -13.52615 -13.44736 -13.03705 -12.94588 -12.87192 -12.75293 -12.36504 -12.34257 -12.20908 -12.09333 -12.05240 -11.98905 -11.60364 -11.35712 -11.12467 -11.04333 -10.58625 -10.49308 -10.09442 -9.72822 -8.96125 -8.20467 -5.56144 1.26060 1.40700 1.48200 1.48735 1.59147 1.82990 2.23798 2.37431 2.70372 3.01717 3.20512 3.29275 3.44669 3.71916 3.93354 3.97686 4.01585 4.06099 4.13501 4.16469 4.19849 4.29692 4.34134 4.38123 4.52397 4.55349 4.58549 4.68692 4.70933 4.72652 4.80168 4.81047 4.88774 4.90366 4.93918 4.95888 5.01626 5.08599 5.15123 5.17959 5.28472 5.41983 5.61809 5.78744 6.07826 6.14240 6.21213 6.54618 6.81852 7.13602 7.23528 7.53059 7.93643 8.98904 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026185 B = 0.002298 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.070099 B =12182.277192 C =12712.714530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.156 3.844 3 C -0.160 4.160 4 N -0.598 5.598 5 C 0.506 3.494 6 O -0.572 6.572 7 C -0.146 4.146 8 C -0.113 4.113 9 C 0.112 3.888 10 H 0.142 0.858 11 C 0.504 3.496 12 O -0.566 6.566 13 N -0.703 5.703 14 C 0.143 3.857 15 C 0.078 3.922 16 H 0.073 0.927 17 C 0.116 3.884 18 N -0.623 5.623 19 C -0.251 4.251 20 H 0.057 0.943 21 C -0.031 4.031 22 N -0.954 5.954 23 Si 0.947 3.053 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.312 1.312 27 C 0.077 3.923 28 C 0.061 3.939 29 O -0.380 6.380 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.142 0.858 41 H 0.418 0.582 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.034 0.966 46 H 0.263 0.737 47 H 0.031 0.969 48 H 0.066 0.934 49 H 0.122 0.878 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 19.549 15.568 25.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.054 3.946 3 C -0.218 4.218 4 N -0.331 5.331 5 C 0.296 3.704 6 O -0.452 6.452 7 C -0.186 4.186 8 C -0.151 4.151 9 C 0.005 3.995 10 H 0.159 0.841 11 C 0.290 3.710 12 O -0.445 6.445 13 N -0.356 5.356 14 C 0.018 3.982 15 C 0.019 3.981 16 H 0.090 0.910 17 C -0.009 4.009 18 N -0.349 5.349 19 C -0.381 4.381 20 H 0.075 0.925 21 C -0.226 4.226 22 N -0.600 5.600 23 Si 0.776 3.224 24 H -0.187 1.187 25 H -0.198 1.198 26 H -0.241 1.241 27 C -0.048 4.048 28 C -0.017 4.017 29 O -0.299 6.299 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.152 0.848 39 H 0.098 0.902 40 H 0.160 0.840 41 H 0.255 0.745 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.052 0.948 46 H 0.072 0.928 47 H 0.049 0.951 48 H 0.084 0.916 49 H 0.140 0.860 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.546 20.215 15.221 25.433 hybrid contribution -0.211 -1.355 -0.440 1.440 sum -2.757 18.860 14.782 24.121 Atomic orbital electron populations 1.21981 0.95686 1.01448 1.01768 1.20934 0.94113 0.92552 0.87005 1.22147 1.01562 0.95369 1.02692 1.48337 1.50619 1.27717 1.06474 1.21614 0.79230 0.85135 0.84468 1.90674 1.41415 1.31142 1.81992 1.22419 1.03870 0.94665 0.97603 1.22739 1.06496 0.96820 0.89055 1.21899 0.96728 0.84368 0.96485 0.84102 1.21096 0.82957 0.82777 0.84183 1.90726 1.28657 1.77388 1.47687 1.45708 1.34855 1.15331 1.39661 1.21132 0.97585 0.86413 0.93043 1.22553 0.99453 0.91222 0.84873 0.90958 1.21585 0.95184 0.85989 0.98189 1.44464 1.60822 1.23175 1.06403 1.18840 1.26728 0.90196 1.02296 0.92493 1.25898 0.99201 0.98097 0.99452 1.69933 1.33801 1.11679 1.44559 0.85977 0.80594 0.77299 0.78558 1.18705 1.19837 1.24081 1.22199 0.99213 0.97169 0.86185 1.23002 0.94488 0.85089 0.99130 1.87838 1.66649 1.40944 1.34465 0.93627 0.90961 0.93490 0.88925 0.90384 0.93194 0.91614 0.87247 0.84818 0.90231 0.83998 0.74460 0.89593 0.91773 0.90977 0.94846 0.92794 0.95074 0.91611 0.86030 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.03 71.98 0.65 -2.93 16 2 C 0.16 3.23 2.38 44.99 0.11 3.33 16 3 C -0.16 -2.87 9.20 71.98 0.66 -2.21 16 4 N -0.60 -10.97 2.59 -774.52 -2.01 -12.97 16 5 C 0.51 10.17 7.41 87.90 0.65 10.82 16 6 O -0.57 -16.35 15.12 -3.03 -0.05 -16.39 16 7 C -0.15 -1.40 6.86 30.59 0.21 -1.19 16 8 C -0.11 -0.76 6.60 31.65 0.21 -0.55 16 9 C 0.11 1.32 3.70 44.70 0.17 1.49 16 10 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 11 C 0.50 9.15 6.88 87.66 0.60 9.75 16 12 O -0.57 -15.03 12.89 -3.02 -0.04 -15.07 16 13 N -0.70 -11.26 5.44 -463.06 -2.52 -13.78 16 14 C 0.14 3.13 5.35 86.38 0.46 3.59 16 15 C 0.08 2.05 2.80 30.55 0.09 2.14 16 16 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 17 C 0.12 4.09 6.00 86.21 0.52 4.60 16 18 N -0.62 -27.43 2.81 -698.36 -1.97 -29.39 16 19 C -0.25 -13.57 10.09 84.03 0.85 -12.72 16 20 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 21 C -0.03 -1.75 5.26 84.86 0.45 -1.31 16 22 N -0.95 -57.87 13.97 21.65 0.30 -57.56 16 23 Si 0.95 44.79 24.29 68.60 1.67 46.46 16 24 H -0.26 -11.19 6.39 99.48 0.64 -10.55 16 25 H -0.27 -12.78 6.84 99.48 0.68 -12.10 16 26 H -0.31 -15.17 7.11 99.48 0.71 -14.46 16 27 C 0.08 2.98 4.39 86.35 0.38 3.36 16 28 C 0.06 1.70 6.99 72.08 0.50 2.21 16 29 O -0.38 -10.16 10.33 -148.98 -1.54 -11.70 16 30 H 0.04 1.22 6.80 -2.39 -0.02 1.20 16 31 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.05 1.28 7.10 -2.39 -0.02 1.27 16 33 H 0.09 1.99 6.49 -2.39 -0.02 1.98 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.05 1.11 6.77 -2.39 -0.02 1.09 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.08 0.77 7.91 -2.39 -0.02 0.75 16 40 H 0.14 -0.10 8.14 -2.38 -0.02 -0.12 16 41 H 0.42 4.47 8.45 -92.71 -0.78 3.69 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.07 2.52 7.96 -2.39 -0.02 2.50 16 45 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 47 H 0.03 1.22 7.00 -2.39 -0.02 1.21 16 48 H 0.07 2.77 4.67 -2.39 -0.01 2.76 16 49 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 50 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -76.89 386.05 0.41 -76.47 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.06 Total: 13.56 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 6.50 Total: 20.38 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -6.19 Total: -113.71 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -1.62 Total: -43.16 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.67 Total: 46.46 kcal Total: -76.89 0.41 -76.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035483119.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.682 kcal (2) G-P(sol) polarization free energy of solvation -76.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds