Wall clock time and date at job start Sat Apr 11 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47091 * 2 1 4 4 N 1.46500 * 109.47088 * 180.02562 * 3 2 1 5 5 C 1.46825 * 124.33671 * 269.93765 * 4 3 2 6 6 C 1.54482 * 105.44518 * 197.00104 * 5 4 3 7 7 H 1.08993 * 110.96850 * 92.76219 * 6 5 4 8 8 C 1.50698 * 110.96769 * 216.49053 * 6 5 4 9 9 O 1.21284 * 119.99823 * 356.91474 * 8 6 5 10 10 N 1.34771 * 119.99908 * 176.90573 * 8 6 5 11 11 C 1.46512 * 119.99872 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.46814 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.55579 * 304.87156 * 12 11 10 14 14 C 1.52880 * 109.57949 * 184.88093 * 12 11 10 15 15 N 1.47153 * 108.60477 * 187.92021 * 14 12 11 16 16 C 1.36941 * 120.97852 * 230.49937 * 15 14 12 17 17 H 1.07991 * 120.00597 * 26.03887 * 16 15 14 18 18 C 1.38817 * 119.99578 * 206.03493 * 16 15 14 19 19 N 1.31620 * 119.99958 * 17.04318 * 18 16 15 20 20 Si 1.86796 * 119.99844 * 197.03206 * 18 16 15 21 21 H 1.48507 * 109.46822 * 84.89845 * 20 18 16 22 22 H 1.48505 * 109.47623 * 324.89944 * 20 18 16 23 23 H 1.48504 * 109.47393 * 204.89366 * 20 18 16 24 24 C 1.47150 * 118.03679 * 50.23227 * 15 14 12 25 25 C 1.53296 * 108.38239 * 309.71043 * 24 15 14 26 26 O 1.42955 * 109.51505 * 65.00120 * 12 11 10 27 27 C 1.54630 * 101.79792 * 334.62653 * 6 5 4 28 28 C 1.34424 * 124.35045 * 89.97473 * 4 3 2 29 29 O 1.21281 * 124.94037 * 359.55757 * 28 4 3 30 30 H 1.08997 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46845 * 300.00113 * 1 2 3 32 32 H 1.09000 * 109.47126 * 59.99409 * 1 2 3 33 33 H 1.09007 * 109.46770 * 240.00571 * 2 1 3 34 34 H 1.08995 * 109.47484 * 120.00279 * 2 1 3 35 35 H 1.09001 * 109.47368 * 60.00207 * 3 2 1 36 36 H 1.09000 * 109.47618 * 300.00289 * 3 2 1 37 37 H 1.08994 * 110.23467 * 78.01783 * 5 4 3 38 38 H 1.09002 * 110.27591 * 316.00122 * 5 4 3 39 39 H 0.97003 * 120.00329 * 0.02562 * 10 8 6 40 40 H 1.08998 * 109.46657 * 60.00651 * 11 10 8 41 41 H 1.08998 * 109.46615 * 300.00115 * 11 10 8 42 42 H 1.08998 * 109.61705 * 68.10269 * 14 12 11 43 43 H 1.08995 * 109.52497 * 307.68875 * 14 12 11 44 44 H 0.96999 * 119.99771 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.68286 * 69.43260 * 24 15 14 46 46 H 1.09004 * 109.68187 * 189.99248 * 24 15 14 47 47 H 1.09000 * 109.51103 * 172.22762 * 25 24 15 48 48 H 1.09004 * 109.51235 * 292.38337 * 25 24 15 49 49 H 1.08994 * 110.48622 * 143.45722 * 27 6 5 50 50 H 1.09000 * 110.48718 * 265.97292 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3337 1.4436 1.2114 6 6 5.7414 1.8785 0.7469 7 1 5.8678 2.9569 0.8426 8 6 6.8124 1.1429 1.5103 9 8 6.5057 0.3753 2.3979 10 7 8.1109 1.3378 1.2067 11 6 9.1521 0.6221 1.9485 12 6 10.5275 1.0212 1.4101 13 1 10.5639 0.8445 0.3352 14 6 11.6086 0.1873 2.0979 15 7 12.9263 0.7149 1.7098 16 6 13.9063 -0.1157 1.2355 17 1 13.6401 -1.0425 0.7492 18 6 15.2420 0.2337 1.3796 19 7 15.5894 1.1637 2.2438 20 14 16.5464 -0.6162 0.3474 21 1 16.6560 0.0627 -0.9688 22 1 16.1666 -2.0370 0.1413 23 1 17.8536 -0.5500 1.0488 24 6 13.1579 2.1622 1.8409 25 6 11.9995 2.9006 1.1606 26 8 10.7601 2.4068 1.6743 27 6 5.7295 1.4525 -0.7394 28 6 4.2630 1.4421 -1.1107 29 8 3.8337 1.4341 -2.2450 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 4.3712 0.4436 1.6434 38 1 3.9397 2.1545 1.9377 39 1 8.3561 1.9519 0.4970 40 1 9.0116 -0.4519 1.8269 41 1 9.0872 0.8799 3.0056 42 1 11.5229 -0.8531 1.7845 43 1 11.4893 0.2565 3.1791 44 1 16.5227 1.4081 2.3443 45 1 13.1972 2.4336 2.8957 46 1 14.0976 2.4289 1.3573 47 1 12.0786 3.9684 1.3646 48 1 12.0412 2.7306 0.0847 49 1 6.2720 2.1759 -1.3480 50 1 6.1613 0.4583 -0.8548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035523458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:49 Heat of formation + Delta-G solvation = -97.314921 kcal Electronic energy + Delta-G solvation = -29637.911001 eV Core-core repulsion = 25472.614418 eV Total energy + Delta-G solvation = -4165.296583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.13587 -39.55148 -38.52053 -36.69581 -35.18851 -35.02142 -34.36540 -32.15070 -31.47199 -30.63613 -28.13756 -27.66898 -26.76114 -25.53324 -23.47847 -23.13291 -22.16561 -21.79664 -20.52237 -19.76718 -19.57908 -17.87605 -17.18596 -16.95765 -16.27281 -16.17997 -15.95889 -15.56716 -15.16951 -15.00158 -14.86761 -14.48748 -14.19747 -14.06651 -13.91392 -13.82161 -13.63156 -13.27837 -13.20045 -13.03923 -12.78592 -12.56184 -12.42333 -12.19632 -11.93084 -11.80078 -11.65989 -11.59948 -11.17401 -11.11686 -10.90670 -10.79198 -10.47986 -10.34621 -10.30267 -10.04211 -9.93085 -9.71759 -9.16024 -9.12774 -9.05702 -8.59792 -6.82089 -5.89764 -3.33582 2.24260 2.40314 2.55089 3.02997 3.31217 3.38233 3.39197 3.86225 3.96327 4.15259 4.37698 4.42043 4.46905 4.55196 4.59387 4.83984 4.84681 5.00344 5.04835 5.08765 5.18759 5.20203 5.27668 5.34708 5.36784 5.39598 5.44649 5.54257 5.62212 5.69096 5.73243 5.76385 5.83264 5.94570 6.07470 6.17045 6.20295 6.29852 6.38657 6.41533 6.68204 6.72866 7.03570 7.37063 7.45454 7.65452 7.77511 7.81979 8.04423 8.27564 9.05725 9.68353 10.24697 11.18450 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025808 B = 0.001881 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.671319 B =14882.196063 C =15033.097200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.126 3.874 4 N -0.620 5.620 5 C 0.117 3.883 6 C -0.124 4.124 7 H 0.120 0.880 8 C 0.524 3.476 9 O -0.539 6.539 10 N -0.714 5.714 11 C 0.130 3.870 12 C 0.064 3.936 13 H 0.059 0.941 14 C 0.121 3.879 15 N -0.593 5.593 16 C -0.257 4.257 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.279 1.279 23 H -0.290 1.290 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.390 6.390 27 C -0.146 4.146 28 C 0.521 3.479 29 O -0.530 6.530 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.405 0.595 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.030 0.970 44 H 0.256 0.744 45 H 0.029 0.971 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.041 0.959 49 H 0.112 0.888 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.489 3.525 -3.121 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.354 5.354 5 C -0.006 4.006 6 C -0.146 4.146 7 H 0.138 0.862 8 C 0.308 3.692 9 O -0.416 6.416 10 N -0.365 5.365 11 C 0.006 3.994 12 C 0.004 3.996 13 H 0.077 0.923 14 C -0.006 4.006 15 N -0.317 5.317 16 C -0.386 4.386 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.736 3.264 21 H -0.213 1.213 22 H -0.204 1.204 23 H -0.216 1.216 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.309 6.309 27 C -0.186 4.186 28 C 0.308 3.692 29 O -0.406 6.406 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.239 0.761 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.047 0.953 46 H 0.112 0.888 47 H 0.100 0.900 48 H 0.059 0.941 49 H 0.130 0.870 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -24.927 3.120 -2.918 25.290 hybrid contribution 1.242 -0.180 -0.809 1.494 sum -23.685 2.939 -3.728 24.156 Atomic orbital electron populations 1.21690 0.94897 1.02158 1.01950 1.21929 0.96346 0.97033 1.02895 1.21466 0.77525 0.97282 1.03249 1.48368 1.06383 1.73399 1.07245 1.22004 0.87764 1.03952 0.86843 1.22245 0.94560 1.02580 0.95226 0.86232 1.19986 0.83330 0.82249 0.83611 1.90726 1.82139 1.37087 1.31662 1.45929 1.05406 1.46396 1.38724 1.21465 0.84560 0.96413 0.96956 1.22725 0.93554 0.84175 0.99098 0.92314 1.21355 0.86290 0.96163 0.96781 1.44044 1.09414 1.02842 1.75410 1.19194 0.85423 1.03436 1.30583 0.91301 1.25049 0.97396 0.99263 0.97872 1.70032 1.16628 1.33977 1.33971 0.86254 0.81035 0.79261 0.79881 1.21314 1.20410 1.21632 1.21446 0.96162 0.82946 0.98113 1.23333 0.85379 0.97798 0.97303 1.87781 1.39414 1.23730 1.80010 1.22362 0.95610 1.05637 0.95030 1.20753 0.88905 0.75107 0.84411 1.90739 1.78496 1.50319 1.21066 0.92313 0.92512 0.92482 0.91525 0.91492 0.90178 0.89936 0.88932 0.89631 0.76050 0.89969 0.90451 0.91767 0.95253 0.93442 0.95331 0.88784 0.90001 0.94058 0.86960 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.14 -1.01 6.26 -26.73 -0.17 -1.17 16 3 C 0.13 0.90 5.93 -4.04 -0.02 0.87 16 4 N -0.62 -5.27 2.93 -172.37 -0.51 -5.77 16 5 C 0.12 0.89 6.69 -3.09 -0.02 0.87 16 6 C -0.12 -0.93 3.54 -90.14 -0.32 -1.25 16 7 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 8 C 0.52 5.62 7.06 -10.99 -0.08 5.54 16 9 O -0.54 -7.67 15.53 5.55 0.09 -7.59 16 10 N -0.71 -7.71 5.49 -60.29 -0.33 -8.04 16 11 C 0.13 1.73 5.34 -4.04 -0.02 1.71 16 12 C 0.06 1.03 2.80 -26.79 -0.07 0.95 16 13 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 14 C 0.12 2.40 6.00 -3.75 -0.02 2.38 16 15 N -0.59 -14.30 3.05 -172.08 -0.53 -14.82 16 16 C -0.26 -6.80 9.65 -15.06 -0.15 -6.95 16 17 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 18 C 0.00 0.08 4.94 -17.43 -0.09 0.00 16 19 N -0.90 -25.42 11.15 55.49 0.62 -24.80 16 20 Si 0.91 21.04 29.59 -169.99 -5.03 16.01 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.14 3.18 5.45 -3.53 -0.02 3.16 16 25 C 0.04 0.72 6.99 37.31 0.26 0.98 16 26 O -0.39 -6.74 10.33 -35.23 -0.36 -7.10 16 27 C -0.15 -1.14 6.40 -26.74 -0.17 -1.31 16 28 C 0.52 5.47 8.02 -10.86 -0.09 5.38 16 29 O -0.53 -7.57 17.59 5.56 0.10 -7.47 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 37 H 0.09 0.83 7.01 -51.93 -0.36 0.47 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.40 3.70 8.47 -40.82 -0.35 3.35 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 43 H 0.03 0.60 8.13 -51.93 -0.42 0.18 16 44 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 47 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 48 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.11 0.88 7.89 -51.93 -0.41 0.47 16 LS Contribution 403.85 15.07 6.09 6.09 Total: -1.00 -33.05 403.85 -9.05 -42.10 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.58 Total: 0.68 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -0.61 Total: 10.72 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.74 Total: -53.44 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.18 Total: -22.16 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.05 -9.05 -42.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035523458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.214 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds