Wall clock time and date at job start Sat Apr 11 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47138 * 2 1 4 4 N 1.46506 * 109.46850 * 119.99603 * 2 1 3 5 5 C 1.46765 * 124.34563 * 120.00314 * 4 2 1 6 6 C 1.54481 * 105.47236 * 162.95986 * 5 4 2 7 7 H 1.09000 * 110.97102 * 267.25840 * 6 5 4 8 8 C 1.50696 * 110.97114 * 143.53559 * 6 5 4 9 9 O 1.21284 * 119.99980 * 349.53525 * 8 6 5 10 10 N 1.34774 * 120.00284 * 169.54266 * 8 6 5 11 11 C 1.46498 * 120.00003 * 184.77259 * 10 8 6 12 12 C 1.46496 * 119.99843 * 4.76953 * 10 8 6 13 13 H 1.08995 * 110.89074 * 3.88763 * 12 10 8 14 14 C 1.55134 * 110.90635 * 127.98101 * 12 10 8 15 15 N 1.47424 * 104.72482 * 155.27686 * 14 12 10 16 16 C 1.36931 * 125.64989 * 155.81875 * 15 14 12 17 17 H 1.08007 * 119.99792 * 350.54801 * 16 15 14 18 18 C 1.38813 * 120.00318 * 170.54158 * 16 15 14 19 19 N 1.31617 * 120.00138 * 158.40737 * 18 16 15 20 20 Si 1.86799 * 119.99928 * 338.41089 * 18 16 15 21 21 H 1.48494 * 109.47154 * 184.92785 * 20 18 16 22 22 H 1.48498 * 109.46857 * 64.92815 * 20 18 16 23 23 H 1.48500 * 109.46864 * 304.93055 * 20 18 16 24 24 C 1.47021 * 108.70022 * 335.54990 * 15 14 12 25 25 C 1.54321 * 107.27173 * 1.29135 * 24 15 14 26 26 H 1.09007 * 110.71932 * 263.64877 * 25 24 15 27 27 O 1.42897 * 110.72217 * 140.55616 * 25 24 15 28 28 C 1.54634 * 101.79872 * 25.39385 * 6 5 4 29 29 C 1.34416 * 124.35256 * 299.97324 * 4 2 1 30 30 O 1.21280 * 124.94117 * 0.43878 * 29 4 2 31 31 H 1.09002 * 109.46942 * 300.00121 * 1 2 3 32 32 H 1.08999 * 109.47516 * 60.00115 * 1 2 3 33 33 H 1.09000 * 109.47219 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47419 * 239.99438 * 2 1 3 35 35 H 1.08999 * 109.47412 * 180.02562 * 3 2 1 36 36 H 1.09006 * 109.46874 * 299.99632 * 3 2 1 37 37 H 1.08998 * 109.47730 * 59.99834 * 3 2 1 38 38 H 1.09003 * 110.24758 * 43.96320 * 5 4 2 39 39 H 1.08993 * 110.24468 * 281.95594 * 5 4 2 40 40 H 1.09002 * 109.47476 * 275.04716 * 11 10 8 41 41 H 1.08999 * 109.47435 * 35.05489 * 11 10 8 42 42 H 1.09004 * 109.47122 * 155.05009 * 11 10 8 43 43 H 1.09004 * 110.49688 * 36.42899 * 14 12 10 44 44 H 1.09003 * 110.34452 * 274.04006 * 14 12 10 45 45 H 0.97006 * 120.00227 * 5.03478 * 19 18 16 46 46 H 1.09002 * 109.87876 * 120.70463 * 24 15 14 47 47 H 1.08994 * 109.88232 * 241.87079 * 24 15 14 48 48 H 0.96705 * 114.00262 * 61.45148 * 27 25 24 49 49 H 1.09004 * 110.48132 * 93.90128 * 28 6 5 50 50 H 1.08995 * 110.48830 * 216.53892 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.8655 -1.8887 1.1729 6 6 3.4727 -1.9918 2.5896 7 1 4.4408 -1.4931 2.6363 8 6 3.5889 -3.4304 3.0232 9 8 3.0564 -4.3047 2.3728 10 7 4.2843 -3.7454 4.1338 11 6 4.4858 -5.1500 4.4981 12 6 4.8388 -2.6833 4.9767 13 1 4.5442 -1.7008 4.6080 14 6 4.4194 -2.8761 6.4578 15 7 5.4641 -2.1860 7.2360 16 6 5.3153 -1.6816 8.5004 17 1 4.3351 -1.6360 8.9516 18 6 6.4242 -1.2291 9.2021 19 7 6.2725 -0.3795 10.1958 20 14 8.1318 -1.8261 8.7362 21 1 9.1237 -1.2937 9.7046 22 1 8.4676 -1.3485 7.3708 23 1 8.1615 -3.3105 8.7626 24 6 6.6941 -2.1347 6.4323 25 6 6.3828 -2.8003 5.0753 26 1 6.6936 -3.8451 5.0779 27 8 7.0128 -2.0901 4.0073 28 6 2.4217 -1.2407 3.4395 29 6 1.7483 -0.3079 2.4562 30 8 1.0648 0.6465 2.7610 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1299 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6766 1.9564 0.8899 38 1 3.6562 -1.7772 0.4309 39 1 2.2645 -2.7715 0.9550 40 1 3.6238 -5.5064 5.0622 41 1 4.6002 -5.7472 3.5935 42 1 5.3834 -5.2416 5.1098 43 1 4.3941 -3.9357 6.7125 44 1 3.4468 -2.4184 6.6389 45 1 5.3821 -0.1257 10.4853 46 1 6.9923 -1.0978 6.2768 47 1 7.4907 -2.6798 6.9385 48 1 7.9778 -2.0672 4.0655 49 1 1.6984 -1.9408 3.8577 50 1 2.9077 -0.6733 4.2331 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047399819.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:01 Heat of formation + Delta-G solvation = -67.619132 kcal Electronic energy + Delta-G solvation = -31678.997410 eV Core-core repulsion = 27514.988533 eV Total energy + Delta-G solvation = -4164.008877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.20178 -39.84887 -38.47398 -36.46205 -35.61315 -35.14089 -35.01014 -32.14957 -30.75983 -29.01378 -28.06135 -28.02468 -27.40392 -27.09262 -24.10554 -23.00079 -22.61899 -21.35817 -20.68399 -19.14960 -18.91161 -18.01922 -17.67669 -17.01034 -16.83677 -16.32671 -16.07501 -15.45421 -15.33647 -14.82260 -14.70346 -14.31428 -14.02793 -13.95218 -13.80894 -13.67687 -13.43783 -13.07799 -13.01714 -12.89418 -12.74660 -12.61027 -12.29329 -12.27516 -12.12430 -11.95472 -11.77470 -11.67495 -11.50523 -11.41785 -11.31876 -11.27536 -10.77969 -10.60337 -10.11255 -10.04311 -9.64258 -9.53868 -9.16636 -8.86847 -8.82418 -8.52028 -7.29552 -6.43424 -3.35493 2.37038 2.50781 2.66194 2.90901 3.25321 3.37295 3.58570 3.98579 4.12182 4.17390 4.35213 4.48258 4.59731 4.68386 4.76616 4.81826 4.87467 4.94014 4.96557 5.06031 5.17640 5.24598 5.31879 5.34485 5.37751 5.39900 5.40921 5.45804 5.50157 5.54891 5.56786 5.64002 5.66762 5.73821 5.77434 5.97631 6.04122 6.05182 6.21595 6.32393 6.38157 6.45444 6.46051 6.95987 7.23865 7.47475 7.64791 7.98718 8.06868 8.19904 8.89577 9.40724 10.04159 11.05829 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014607 B = 0.003351 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.490587 B = 8352.973497 C = 9162.413914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.153 3.847 3 C -0.169 4.169 4 N -0.617 5.617 5 C 0.118 3.882 6 C -0.127 4.127 7 H 0.122 0.878 8 C 0.534 3.466 9 O -0.540 6.540 10 N -0.596 5.596 11 C 0.084 3.916 12 C 0.124 3.876 13 H 0.114 0.886 14 C 0.130 3.870 15 N -0.603 5.603 16 C -0.332 4.332 17 H 0.081 0.919 18 C -0.019 4.019 19 N -0.919 5.919 20 Si 1.065 2.935 21 H -0.298 1.298 22 H -0.283 1.283 23 H -0.297 1.297 24 C 0.090 3.910 25 C 0.079 3.921 26 H 0.070 0.930 27 O -0.560 6.560 28 C -0.146 4.146 29 C 0.525 3.475 30 O -0.525 6.525 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.058 0.942 45 H 0.264 0.736 46 H 0.059 0.941 47 H 0.031 0.969 48 H 0.380 0.620 49 H 0.108 0.892 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.610 -4.799 -20.849 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.051 3.949 3 C -0.227 4.227 4 N -0.352 5.352 5 C -0.005 4.005 6 C -0.148 4.148 7 H 0.140 0.860 8 C 0.321 3.679 9 O -0.418 6.418 10 N -0.327 5.327 11 C -0.058 4.058 12 C 0.019 3.981 13 H 0.132 0.868 14 C 0.003 3.997 15 N -0.332 5.332 16 C -0.459 4.459 17 H 0.099 0.901 18 C -0.220 4.220 19 N -0.559 5.559 20 Si 0.899 3.101 21 H -0.226 1.226 22 H -0.211 1.211 23 H -0.225 1.225 24 C -0.036 4.036 25 C 0.018 3.982 26 H 0.087 0.913 27 O -0.366 6.366 28 C -0.187 4.187 29 C 0.313 3.687 30 O -0.401 6.401 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.049 0.951 48 H 0.228 0.772 49 H 0.126 0.874 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.321 -4.428 -20.838 21.561 hybrid contribution -0.793 -0.495 0.070 0.937 sum -4.114 -4.923 -20.768 21.736 Atomic orbital electron populations 1.22188 0.94694 1.02433 1.03307 1.20933 0.94513 0.93092 0.86336 1.22194 1.01404 0.95719 1.03333 1.48458 1.51549 1.28977 1.06197 1.21996 0.94432 0.88331 0.95725 1.22271 1.01797 0.94496 0.96266 0.85960 1.19986 0.77754 0.90131 0.79980 1.90681 1.46527 1.50033 1.54537 1.47682 1.53223 1.07350 1.24429 1.21657 1.01872 0.80892 1.01360 1.22697 0.91640 0.91336 0.92431 0.86784 1.21867 0.94161 0.96665 0.87030 1.44617 1.06675 1.67234 1.14644 1.20104 0.96058 1.39872 0.89821 0.90114 1.25817 1.02758 0.96589 0.96790 1.70924 1.25237 1.28287 1.31458 0.83924 0.76157 0.75471 0.74583 1.22596 1.21070 1.22524 1.22679 0.91160 0.99549 0.90176 1.23270 0.92991 0.94920 0.86997 0.91272 1.86434 1.24560 1.77813 1.47771 1.22429 0.98601 0.99115 0.98506 1.20665 0.80059 0.84432 0.83551 1.90705 1.39340 1.28634 1.81403 0.90911 0.91502 0.92445 0.89421 0.92365 0.91505 0.90881 0.89921 0.88995 0.92218 0.90843 0.90721 0.94815 0.92412 0.92564 0.92325 0.95139 0.77237 0.87358 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 9.20 37.16 0.34 -1.21 16 2 C 0.15 1.41 3.47 -67.93 -0.24 1.17 16 3 C -0.17 -1.56 9.20 37.16 0.34 -1.22 16 4 N -0.62 -6.74 2.83 -164.82 -0.47 -7.21 16 5 C 0.12 1.18 6.74 -3.12 -0.02 1.16 16 6 C -0.13 -1.41 2.47 -90.14 -0.22 -1.63 16 7 H 0.12 1.34 7.37 -51.93 -0.38 0.95 16 8 C 0.53 6.95 6.87 -10.99 -0.08 6.87 16 9 O -0.54 -8.15 15.21 5.55 0.08 -8.07 16 10 N -0.60 -7.71 2.91 -171.35 -0.50 -8.21 16 11 C 0.08 0.98 8.92 59.85 0.53 1.51 16 12 C 0.12 1.80 2.86 -65.66 -0.19 1.61 16 13 H 0.11 1.65 4.60 -51.93 -0.24 1.41 16 14 C 0.13 2.30 6.79 -2.41 -0.02 2.28 16 15 N -0.60 -13.43 3.31 -169.93 -0.56 -14.00 16 16 C -0.33 -8.94 10.49 -15.06 -0.16 -9.09 16 17 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 18 C -0.02 -0.52 5.47 -17.43 -0.10 -0.62 16 19 N -0.92 -27.84 13.70 55.49 0.76 -27.08 16 20 Si 1.07 24.92 24.81 -169.99 -4.22 20.71 16 21 H -0.30 -7.25 7.11 56.52 0.40 -6.84 16 22 H -0.28 -5.86 5.24 56.52 0.30 -5.56 16 23 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.09 1.74 4.35 -3.07 -0.01 1.73 16 25 C 0.08 1.16 3.87 -24.90 -0.10 1.07 16 26 H 0.07 0.93 6.47 -51.93 -0.34 0.60 16 27 O -0.56 -7.33 13.39 -35.23 -0.47 -7.80 16 28 C -0.15 -1.76 5.80 -26.71 -0.15 -1.91 16 29 C 0.53 7.07 7.41 -10.83 -0.08 6.99 16 30 O -0.52 -8.74 15.12 5.56 0.08 -8.65 16 31 H 0.07 0.86 6.77 -51.93 -0.35 0.50 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.62 8.07 -51.93 -0.42 0.20 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.87 6.80 -51.93 -0.35 0.52 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.99 6.86 -51.93 -0.36 0.64 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.82 7.65 -51.93 -0.40 0.42 16 42 H 0.07 0.81 6.37 -51.93 -0.33 0.48 16 43 H 0.03 0.58 6.96 -51.93 -0.36 0.22 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.26 7.93 8.73 -40.82 -0.36 7.58 16 46 H 0.06 1.22 7.06 -51.93 -0.37 0.85 16 47 H 0.03 0.62 3.97 -51.93 -0.21 0.41 16 48 H 0.38 3.56 9.11 45.56 0.42 3.98 16 49 H 0.11 1.29 7.89 -51.93 -0.41 0.88 16 50 H 0.11 1.42 7.11 -51.93 -0.37 1.05 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -33.75 381.51 -6.78 -40.53 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.10 Total: 5.33 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -0.14 Total: 8.70 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.77 Total: -56.49 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.30 Total: -24.52 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -4.22 Total: 20.71 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.75 -6.78 -40.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047399819.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.089 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds