Wall clock time and date at job start Sat Apr 11 2020 05:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47144 * 2 1 4 4 N 1.46498 * 109.47413 * 120.00172 * 2 1 3 5 5 C 1.46765 * 124.35153 * 120.00086 * 4 2 1 6 6 C 1.54478 * 105.47342 * 163.00277 * 5 4 2 7 7 H 1.09001 * 110.96701 * 143.57119 * 6 5 4 8 8 C 1.50698 * 110.96966 * 267.29741 * 6 5 4 9 9 O 1.21282 * 120.00592 * 0.02562 * 8 6 5 10 10 N 1.34782 * 119.99814 * 179.72270 * 8 6 5 11 11 C 1.46502 * 120.00168 * 0.02562 * 10 8 6 12 12 C 1.46504 * 120.00094 * 179.97438 * 10 8 6 13 13 H 1.09005 * 110.63881 * 3.14550 * 12 10 8 14 14 C 1.54321 * 110.72075 * 126.47791 * 12 10 8 15 15 N 1.47022 * 107.26978 * 140.55334 * 14 12 10 16 16 C 1.36936 * 125.65041 * 181.01321 * 15 14 12 17 17 H 1.07995 * 120.00530 * 162.10479 * 16 15 14 18 18 C 1.38818 * 119.99612 * 342.10764 * 16 15 14 19 19 N 1.31618 * 119.99806 * 156.30616 * 18 16 15 20 20 Si 1.86801 * 120.00182 * 336.30528 * 18 16 15 21 21 H 1.48496 * 109.47057 * 84.67299 * 20 18 16 22 22 H 1.48503 * 109.47106 * 204.67240 * 20 18 16 23 23 H 1.48503 * 109.46990 * 324.66840 * 20 18 16 24 24 C 1.47419 * 108.70384 * 1.06712 * 15 14 12 25 25 C 1.54917 * 104.83198 * 335.86341 * 24 15 14 26 26 H 1.08996 * 111.00478 * 278.93852 * 25 24 15 27 27 O 1.42903 * 111.03457 * 155.09910 * 25 24 15 28 28 C 1.54626 * 101.76421 * 25.41596 * 6 5 4 29 29 C 1.34416 * 124.34789 * 300.02376 * 4 2 1 30 30 O 1.21281 * 124.94102 * 0.42293 * 29 4 2 31 31 H 1.08997 * 109.47045 * 299.99754 * 1 2 3 32 32 H 1.08999 * 109.47264 * 59.99973 * 1 2 3 33 33 H 1.09004 * 109.46872 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47425 * 240.00274 * 2 1 3 35 35 H 1.09010 * 109.47007 * 300.00665 * 3 2 1 36 36 H 1.09003 * 109.46736 * 59.99852 * 3 2 1 37 37 H 1.08993 * 109.47303 * 180.02562 * 3 2 1 38 38 H 1.08998 * 110.24376 * 44.00406 * 5 4 2 39 39 H 1.08991 * 110.31983 * 282.04712 * 5 4 2 40 40 H 1.09000 * 109.47156 * 89.99308 * 11 10 8 41 41 H 1.08993 * 109.47362 * 209.99715 * 11 10 8 42 42 H 1.08998 * 109.46596 * 329.99660 * 11 10 8 43 43 H 1.08996 * 109.88626 * 259.97457 * 14 12 10 44 44 H 1.09003 * 109.88102 * 21.14676 * 14 12 10 45 45 H 0.96997 * 120.00434 * 180.02562 * 19 18 16 46 46 H 1.08999 * 110.37101 * 217.02869 * 24 15 14 47 47 H 1.09001 * 110.46625 * 94.75436 * 24 15 14 48 48 H 0.96697 * 114.00032 * 67.78668 * 27 25 24 49 49 H 1.09006 * 110.48640 * 93.88172 * 28 6 5 50 50 H 1.09003 * 110.48573 * 216.51859 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8656 -1.8888 1.1727 6 6 3.4720 -1.9925 2.5896 7 1 3.5564 -3.0332 2.9025 8 6 4.8100 -1.3022 2.6555 9 8 5.2641 -0.7641 1.6680 10 7 5.4993 -1.2776 3.8135 11 6 4.9481 -1.9223 5.0080 12 6 6.8003 -0.6070 3.8775 13 1 7.0369 -0.1356 2.9235 14 6 6.8259 0.4268 5.0230 15 7 8.1518 0.3471 5.6532 16 6 8.5723 1.0894 6.7243 17 1 9.4326 0.7738 7.2958 18 6 7.8925 2.2476 7.0757 19 7 7.9628 2.7036 8.3084 20 14 6.8781 3.1591 5.7992 21 1 5.5254 2.5520 5.7163 22 1 6.7570 4.5865 6.1902 23 1 7.5456 3.0633 4.4761 24 6 8.9542 -0.6635 4.9403 25 6 7.9137 -1.6070 4.2868 26 1 7.5398 -2.3349 5.0068 27 8 8.4624 -2.2601 3.1402 28 6 2.4198 -1.2421 3.4386 29 6 1.7477 -0.3086 2.4561 30 8 1.0635 0.6453 2.7609 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.6765 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.1299 1.4426 -0.0005 38 1 3.6566 -1.7769 0.4311 39 1 2.2660 -2.7721 0.9533 40 1 5.2776 -2.9606 5.0452 41 1 5.2970 -1.3982 5.8976 42 1 3.8593 -1.8879 4.9696 43 1 6.6653 1.4278 4.6226 44 1 6.0532 0.1892 5.7541 45 1 7.4876 3.5127 8.5541 46 1 9.5791 -1.2159 5.6420 47 1 9.5705 -0.1906 4.1756 48 1 9.1623 -2.8947 3.3464 49 1 1.6961 -1.9426 3.8556 50 1 2.9048 -0.6750 4.2332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047399821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:04 Heat of formation + Delta-G solvation = -64.333439 kcal Electronic energy + Delta-G solvation = -31903.261153 eV Core-core repulsion = 27739.394754 eV Total energy + Delta-G solvation = -4163.866398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.28144 -39.74435 -38.20009 -36.42346 -35.61749 -35.26873 -34.86699 -32.13234 -30.69491 -29.02013 -28.01860 -27.87727 -27.33805 -26.90379 -24.55181 -23.34111 -22.63407 -20.86957 -20.56784 -19.17436 -19.07819 -17.90910 -17.19083 -17.11975 -16.85260 -16.22608 -15.82387 -15.61096 -15.15413 -14.93063 -14.46642 -14.28182 -13.94926 -13.85544 -13.77341 -13.69699 -13.48084 -13.00765 -12.80367 -12.75916 -12.71112 -12.53836 -12.24147 -12.20769 -12.05380 -12.02356 -11.81537 -11.75120 -11.69645 -11.44028 -11.28374 -11.12599 -10.70357 -10.41728 -10.18685 -9.97131 -9.72627 -9.66751 -9.43824 -8.87336 -8.73935 -8.52033 -7.20316 -6.04107 -3.35218 2.44690 2.52265 2.77398 2.88251 3.31530 3.47193 3.48876 4.00055 4.06090 4.17106 4.29154 4.47860 4.55509 4.72809 4.85104 4.89086 4.94303 5.00568 5.02273 5.04798 5.16550 5.23835 5.25274 5.29197 5.39740 5.41105 5.44335 5.45086 5.47780 5.55398 5.60671 5.69256 5.72142 5.75107 5.81279 5.98575 6.15823 6.25315 6.26213 6.38818 6.47952 6.52967 6.67258 6.98373 7.36616 7.54068 7.79047 8.05618 8.11795 8.20976 8.71230 9.58351 10.02436 11.11579 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013016 B = 0.003854 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.647966 B = 7262.668273 C = 8388.440206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.155 3.845 3 C -0.170 4.170 4 N -0.611 5.611 5 C 0.117 3.883 6 C -0.123 4.123 7 H 0.125 0.875 8 C 0.523 3.477 9 O -0.528 6.528 10 N -0.598 5.598 11 C 0.057 3.943 12 C 0.138 3.862 13 H 0.115 0.885 14 C 0.113 3.887 15 N -0.603 5.603 16 C -0.248 4.248 17 H 0.097 0.903 18 C 0.028 3.972 19 N -0.902 5.902 20 Si 0.880 3.120 21 H -0.285 1.285 22 H -0.300 1.300 23 H -0.278 1.278 24 C 0.106 3.894 25 C 0.080 3.920 26 H 0.071 0.929 27 O -0.558 6.558 28 C -0.154 4.154 29 C 0.520 3.480 30 O -0.526 6.526 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.036 0.964 44 H 0.052 0.948 45 H 0.265 0.735 46 H 0.055 0.945 47 H 0.037 0.963 48 H 0.375 0.625 49 H 0.117 0.883 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.917 -15.583 -13.762 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.053 3.947 3 C -0.228 4.228 4 N -0.346 5.346 5 C -0.006 4.006 6 C -0.144 4.144 7 H 0.143 0.857 8 C 0.309 3.691 9 O -0.404 6.404 10 N -0.330 5.330 11 C -0.086 4.086 12 C 0.034 3.966 13 H 0.133 0.867 14 C -0.012 4.012 15 N -0.332 5.332 16 C -0.375 4.375 17 H 0.114 0.886 18 C -0.171 4.171 19 N -0.545 5.545 20 Si 0.712 3.288 21 H -0.213 1.213 22 H -0.228 1.228 23 H -0.205 1.205 24 C -0.021 4.021 25 C 0.019 3.981 26 H 0.088 0.912 27 O -0.362 6.362 28 C -0.194 4.194 29 C 0.307 3.693 30 O -0.402 6.402 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.055 0.945 48 H 0.221 0.779 49 H 0.135 0.865 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.509 -14.188 -14.306 23.716 hybrid contribution -0.024 0.233 -0.232 0.329 sum -12.533 -13.956 -14.537 23.731 Atomic orbital electron populations 1.22184 0.94766 1.02144 1.03333 1.20913 0.94132 0.93332 0.86278 1.22190 1.01989 0.95565 1.03034 1.48362 1.51106 1.28927 1.06167 1.21997 0.94228 0.87591 0.96774 1.22305 0.92822 1.02015 0.97302 0.85739 1.20154 0.85798 0.80206 0.82894 1.90702 1.69692 1.45147 1.34897 1.47662 1.19993 1.55096 1.10262 1.22139 0.99589 0.98020 0.88819 1.22088 0.80526 0.92415 1.01556 0.86747 1.21951 0.90296 0.96029 0.92961 1.44571 1.08125 1.45194 1.35263 1.18629 1.14884 1.02759 1.01178 0.88562 1.24919 0.98739 0.97359 0.96129 1.69833 1.44740 1.24140 1.15749 0.87046 0.80182 0.79027 0.82578 1.21274 1.22795 1.20490 1.22243 0.93632 0.91000 0.95187 1.23369 0.94166 0.93630 0.86957 0.91154 1.86530 1.56897 1.59967 1.32809 1.22555 0.98447 0.99713 0.98665 1.20688 0.80161 0.84692 0.83728 1.90709 1.39532 1.28548 1.81413 0.90985 0.91502 0.92613 0.89443 0.91607 0.91121 0.91960 0.88510 0.90266 0.92149 0.89353 0.90364 0.94711 0.93046 0.92499 0.92638 0.94500 0.77856 0.86462 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 9.20 37.16 0.34 -1.20 16 2 C 0.16 1.60 3.47 -67.93 -0.24 1.36 16 3 C -0.17 -2.02 9.20 37.16 0.34 -1.68 16 4 N -0.61 -6.92 2.83 -164.85 -0.47 -7.39 16 5 C 0.12 1.06 6.63 -3.12 -0.02 1.04 16 6 C -0.12 -1.15 2.63 -90.14 -0.24 -1.39 16 7 H 0.12 0.73 8.05 -51.93 -0.42 0.31 16 8 C 0.52 7.50 7.00 -10.98 -0.08 7.43 16 9 O -0.53 -9.56 14.90 5.56 0.08 -9.48 16 10 N -0.60 -8.77 2.88 -171.84 -0.49 -9.26 16 11 C 0.06 0.62 8.74 59.85 0.52 1.14 16 12 C 0.14 2.50 3.10 -66.10 -0.20 2.30 16 13 H 0.11 2.36 7.00 -51.93 -0.36 2.00 16 14 C 0.11 2.47 4.72 -3.07 -0.01 2.45 16 15 N -0.60 -14.20 3.21 -170.07 -0.55 -14.75 16 16 C -0.25 -6.85 10.56 -15.06 -0.16 -7.01 16 17 H 0.10 2.78 8.06 -52.49 -0.42 2.36 16 18 C 0.03 0.81 5.43 -17.43 -0.09 0.72 16 19 N -0.90 -27.37 13.97 55.49 0.78 -26.59 16 20 Si 0.88 23.22 24.39 -169.99 -4.15 19.07 16 21 H -0.29 -7.34 6.84 56.52 0.39 -6.96 16 22 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 23 H -0.28 -7.41 6.87 56.52 0.39 -7.03 16 24 C 0.11 2.00 6.97 -2.53 -0.02 1.99 16 25 C 0.08 1.27 4.00 -24.58 -0.10 1.17 16 26 H 0.07 1.01 7.29 -51.93 -0.38 0.63 16 27 O -0.56 -8.10 13.47 -35.23 -0.47 -8.57 16 28 C -0.15 -1.53 5.12 -26.74 -0.14 -1.66 16 29 C 0.52 6.98 7.41 -10.86 -0.08 6.90 16 30 O -0.53 -8.96 15.12 5.56 0.08 -8.88 16 31 H 0.07 0.85 6.77 -51.93 -0.35 0.50 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.72 8.07 -51.93 -0.42 0.31 16 35 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 36 H 0.07 1.02 6.80 -51.93 -0.35 0.67 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.10 1.00 7.02 -51.93 -0.36 0.64 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 41 H 0.09 1.13 6.08 -51.93 -0.32 0.81 16 42 H 0.08 0.65 4.45 -51.93 -0.23 0.42 16 43 H 0.04 0.87 3.52 -51.93 -0.18 0.68 16 44 H 0.05 1.11 5.94 -51.93 -0.31 0.80 16 45 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.37 3.58 9.12 45.56 0.42 3.99 16 49 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.11 1.26 6.24 -51.93 -0.32 0.94 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -37.02 381.71 -6.59 -43.61 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.98 Total: 2.93 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -0.17 Total: 13.56 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.73 Total: -57.99 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.31 Total: -26.93 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.15 Total: 19.07 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.02 -6.59 -43.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047399821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.726 kcal (2) G-P(sol) polarization free energy of solvation -37.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds