Wall clock time and date at job start Sat Apr 11 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47144 * 2 1 4 4 N 1.46498 * 109.47413 * 120.00172 * 2 1 3 5 5 C 1.46765 * 124.35153 * 120.00086 * 4 2 1 6 6 C 1.54478 * 105.47342 * 163.00277 * 5 4 2 7 7 H 1.09001 * 110.96701 * 143.57119 * 6 5 4 8 8 C 1.50698 * 110.96966 * 267.29741 * 6 5 4 9 9 O 1.21282 * 120.00592 * 0.02562 * 8 6 5 10 10 N 1.34782 * 119.99814 * 179.72270 * 8 6 5 11 11 C 1.46502 * 120.00168 * 0.02562 * 10 8 6 12 12 C 1.46504 * 120.00094 * 179.97438 * 10 8 6 13 13 H 1.09005 * 110.63881 * 3.14550 * 12 10 8 14 14 C 1.54321 * 110.72075 * 126.47791 * 12 10 8 15 15 N 1.47022 * 107.26978 * 140.55334 * 14 12 10 16 16 C 1.36936 * 125.65041 * 181.01321 * 15 14 12 17 17 H 1.07995 * 120.00530 * 162.10479 * 16 15 14 18 18 C 1.38818 * 119.99612 * 342.10764 * 16 15 14 19 19 N 1.31618 * 119.99806 * 156.30616 * 18 16 15 20 20 Si 1.86801 * 120.00182 * 336.30528 * 18 16 15 21 21 H 1.48496 * 109.47057 * 84.67299 * 20 18 16 22 22 H 1.48503 * 109.47106 * 204.67240 * 20 18 16 23 23 H 1.48503 * 109.46990 * 324.66840 * 20 18 16 24 24 C 1.47419 * 108.70384 * 1.06712 * 15 14 12 25 25 C 1.54917 * 104.83198 * 335.86341 * 24 15 14 26 26 H 1.08996 * 111.00478 * 278.93852 * 25 24 15 27 27 O 1.42903 * 111.03457 * 155.09910 * 25 24 15 28 28 C 1.54626 * 101.76421 * 25.41596 * 6 5 4 29 29 C 1.34416 * 124.34789 * 300.02376 * 4 2 1 30 30 O 1.21281 * 124.94102 * 0.42293 * 29 4 2 31 31 H 1.08997 * 109.47045 * 299.99754 * 1 2 3 32 32 H 1.08999 * 109.47264 * 59.99973 * 1 2 3 33 33 H 1.09004 * 109.46872 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47425 * 240.00274 * 2 1 3 35 35 H 1.09010 * 109.47007 * 300.00665 * 3 2 1 36 36 H 1.09003 * 109.46736 * 59.99852 * 3 2 1 37 37 H 1.08993 * 109.47303 * 180.02562 * 3 2 1 38 38 H 1.08998 * 110.24376 * 44.00406 * 5 4 2 39 39 H 1.08991 * 110.31983 * 282.04712 * 5 4 2 40 40 H 1.09000 * 109.47156 * 89.99308 * 11 10 8 41 41 H 1.08993 * 109.47362 * 209.99715 * 11 10 8 42 42 H 1.08998 * 109.46596 * 329.99660 * 11 10 8 43 43 H 1.08996 * 109.88626 * 259.97457 * 14 12 10 44 44 H 1.09003 * 109.88102 * 21.14676 * 14 12 10 45 45 H 0.96997 * 120.00434 * 180.02562 * 19 18 16 46 46 H 1.08999 * 110.37101 * 217.02869 * 24 15 14 47 47 H 1.09001 * 110.46625 * 94.75436 * 24 15 14 48 48 H 0.96697 * 114.00032 * 67.78668 * 27 25 24 49 49 H 1.09006 * 110.48640 * 93.88172 * 28 6 5 50 50 H 1.09003 * 110.48573 * 216.51859 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8656 -1.8888 1.1727 6 6 3.4720 -1.9925 2.5896 7 1 3.5564 -3.0332 2.9025 8 6 4.8100 -1.3022 2.6555 9 8 5.2641 -0.7641 1.6680 10 7 5.4993 -1.2776 3.8135 11 6 4.9481 -1.9223 5.0080 12 6 6.8003 -0.6070 3.8775 13 1 7.0369 -0.1356 2.9235 14 6 6.8259 0.4268 5.0230 15 7 8.1518 0.3471 5.6532 16 6 8.5723 1.0894 6.7243 17 1 9.4326 0.7738 7.2958 18 6 7.8925 2.2476 7.0757 19 7 7.9628 2.7036 8.3084 20 14 6.8781 3.1591 5.7992 21 1 5.5254 2.5520 5.7163 22 1 6.7570 4.5865 6.1902 23 1 7.5456 3.0633 4.4761 24 6 8.9542 -0.6635 4.9403 25 6 7.9137 -1.6070 4.2868 26 1 7.5398 -2.3349 5.0068 27 8 8.4624 -2.2601 3.1402 28 6 2.4198 -1.2421 3.4386 29 6 1.7477 -0.3086 2.4561 30 8 1.0635 0.6453 2.7609 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.6765 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.1299 1.4426 -0.0005 38 1 3.6566 -1.7769 0.4311 39 1 2.2660 -2.7721 0.9533 40 1 5.2776 -2.9606 5.0452 41 1 5.2970 -1.3982 5.8976 42 1 3.8593 -1.8879 4.9696 43 1 6.6653 1.4278 4.6226 44 1 6.0532 0.1892 5.7541 45 1 7.4876 3.5127 8.5541 46 1 9.5791 -1.2159 5.6420 47 1 9.5705 -0.1906 4.1756 48 1 9.1623 -2.8947 3.3464 49 1 1.6961 -1.9426 3.8556 50 1 2.9048 -0.6750 4.2332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047399821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:03 Heat of formation + Delta-G solvation = -94.784605 kcal Electronic energy + Delta-G solvation = -31904.581614 eV Core-core repulsion = 27739.394754 eV Total energy + Delta-G solvation = -4165.186860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.23169 -40.92398 -39.53876 -37.42620 -36.92409 -36.47477 -35.91314 -34.14189 -31.78779 -30.49626 -29.46049 -28.79400 -28.19229 -27.91414 -26.23978 -24.50099 -23.47899 -22.56536 -21.84767 -20.24843 -20.04254 -19.23635 -18.91253 -18.15565 -17.80955 -17.62545 -17.10084 -16.81202 -16.31671 -16.12203 -15.93268 -15.44467 -15.32077 -15.21548 -14.76293 -14.62649 -14.55777 -14.41460 -14.29727 -13.86179 -13.85608 -13.66379 -13.58515 -13.43677 -13.25480 -13.14264 -13.01620 -12.88086 -12.62384 -12.58482 -12.53602 -12.28562 -12.26473 -12.13402 -11.88918 -11.52741 -11.19997 -10.85178 -10.81018 -10.69276 -9.73721 -9.72198 -9.21530 -8.29217 -5.53968 1.16028 1.27672 1.33085 1.44843 1.51441 1.76371 2.02287 2.27590 2.79885 3.04461 3.20456 3.27984 3.33468 3.40357 3.56519 3.79016 3.85050 3.92503 3.95531 4.04694 4.13768 4.22770 4.25285 4.30301 4.37038 4.47956 4.55122 4.59269 4.63639 4.65480 4.69544 4.76486 4.78265 4.81544 4.82442 4.85210 4.87248 4.97123 5.04222 5.14128 5.25349 5.38097 5.54807 5.65004 6.00842 6.13501 6.30458 6.61408 6.87384 7.04118 7.12528 7.41576 7.95253 8.90338 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013016 B = 0.003854 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.647966 B = 7262.668273 C = 8388.440206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 C -0.166 4.166 4 N -0.612 5.612 5 C 0.115 3.885 6 C -0.108 4.108 7 H 0.178 0.822 8 C 0.512 3.488 9 O -0.576 6.576 10 N -0.601 5.601 11 C 0.051 3.949 12 C 0.145 3.855 13 H 0.083 0.917 14 C 0.112 3.888 15 N -0.618 5.618 16 C -0.229 4.229 17 H 0.080 0.920 18 C -0.017 4.017 19 N -0.940 5.940 20 Si 0.929 3.071 21 H -0.282 1.282 22 H -0.305 1.305 23 H -0.291 1.291 24 C 0.099 3.901 25 C 0.106 3.894 26 H 0.100 0.900 27 O -0.564 6.564 28 C -0.147 4.147 29 C 0.501 3.499 30 O -0.577 6.577 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.107 0.893 43 H 0.002 0.998 44 H 0.055 0.945 45 H 0.264 0.736 46 H 0.073 0.927 47 H 0.028 0.972 48 H 0.400 0.600 49 H 0.162 0.838 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.253 -19.863 -15.055 28.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.046 3.954 3 C -0.224 4.224 4 N -0.345 5.345 5 C -0.007 4.007 6 C -0.128 4.128 7 H 0.196 0.804 8 C 0.302 3.698 9 O -0.455 6.455 10 N -0.332 5.332 11 C -0.090 4.090 12 C 0.039 3.961 13 H 0.101 0.899 14 C -0.013 4.013 15 N -0.346 5.346 16 C -0.357 4.357 17 H 0.098 0.902 18 C -0.213 4.213 19 N -0.587 5.587 20 Si 0.761 3.239 21 H -0.209 1.209 22 H -0.233 1.233 23 H -0.218 1.218 24 C -0.026 4.026 25 C 0.045 3.955 26 H 0.117 0.883 27 O -0.372 6.372 28 C -0.187 4.187 29 C 0.289 3.711 30 O -0.457 6.457 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.133 0.867 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.145 0.855 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.125 0.875 43 H 0.019 0.981 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.046 0.954 48 H 0.250 0.750 49 H 0.180 0.820 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.827 -18.550 -15.632 27.922 hybrid contribution 0.502 1.525 0.084 1.607 sum -13.324 -17.025 -15.547 26.629 Atomic orbital electron populations 1.22089 0.93747 1.02966 1.02625 1.21098 0.94967 0.92209 0.87117 1.22149 1.00327 0.97369 1.02521 1.48580 1.50593 1.29478 1.05875 1.22273 0.94210 0.88074 0.96178 1.22432 0.88997 1.03806 0.97614 0.80447 1.21163 0.87172 0.79594 0.81914 1.90688 1.71110 1.47109 1.36572 1.47780 1.18785 1.54786 1.11859 1.22424 1.01321 0.99085 0.86167 1.21637 0.83732 0.92570 0.98152 0.89926 1.21910 0.89530 0.95746 0.94136 1.44670 1.09800 1.45312 1.34850 1.18668 1.13311 1.02280 1.01490 0.90199 1.25311 1.00510 0.98506 0.97014 1.69899 1.46874 1.24965 1.16946 0.86252 0.79403 0.77900 0.80303 1.20906 1.23307 1.21812 1.22489 0.94373 0.90575 0.95171 1.23033 0.91967 0.93110 0.87356 0.88269 1.86498 1.57977 1.60541 1.32165 1.22616 0.99031 0.99647 0.97362 1.21415 0.79882 0.84635 0.85124 1.90680 1.41954 1.30771 1.82338 0.94075 0.89789 0.90938 0.86749 0.89330 0.94414 0.94275 0.89923 0.85526 0.88620 0.91541 0.87519 0.98055 0.92754 0.92617 0.90857 0.95356 0.74974 0.82001 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.20 71.98 0.66 -1.99 16 2 C 0.15 2.85 3.47 44.99 0.16 3.00 16 3 C -0.17 -4.07 9.20 71.98 0.66 -3.40 16 4 N -0.61 -12.74 2.83 -794.06 -2.25 -14.99 16 5 C 0.11 1.62 6.63 86.83 0.58 2.20 16 6 C -0.11 -1.54 2.63 -10.48 -0.03 -1.57 16 7 H 0.18 0.75 8.05 -2.39 -0.02 0.74 16 8 C 0.51 13.62 7.00 87.66 0.61 14.24 16 9 O -0.58 -20.70 14.90 -3.04 -0.05 -20.74 16 10 N -0.60 -16.26 2.88 -815.95 -2.35 -18.61 16 11 C 0.05 0.91 8.74 127.77 1.12 2.03 16 12 C 0.14 5.13 3.10 46.18 0.14 5.27 16 13 H 0.08 3.48 7.00 -2.38 -0.02 3.47 16 14 C 0.11 4.93 4.72 86.73 0.41 5.34 16 15 N -0.62 -29.10 3.21 -691.99 -2.22 -31.32 16 16 C -0.23 -12.83 10.56 84.04 0.89 -11.94 16 17 H 0.08 4.68 8.06 -2.91 -0.02 4.66 16 18 C -0.02 -1.02 5.43 84.86 0.46 -0.56 16 19 N -0.94 -58.46 13.97 21.65 0.30 -58.16 16 20 Si 0.93 49.95 24.39 68.60 1.67 51.63 16 21 H -0.28 -14.73 6.84 99.48 0.68 -14.05 16 22 H -0.30 -16.40 7.11 99.48 0.71 -15.69 16 23 H -0.29 -15.94 6.87 99.48 0.68 -15.26 16 24 C 0.10 3.63 6.97 86.86 0.61 4.23 16 25 C 0.11 3.11 4.00 31.99 0.13 3.23 16 26 H 0.10 2.40 7.29 -2.39 -0.02 2.38 16 27 O -0.56 -14.59 13.47 -148.98 -2.01 -16.59 16 28 C -0.15 -2.42 5.12 30.59 0.16 -2.27 16 29 C 0.50 12.95 7.41 87.90 0.65 13.60 16 30 O -0.58 -20.26 15.12 -3.03 -0.05 -20.30 16 31 H 0.04 0.97 6.77 -2.39 -0.02 0.95 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.11 1.59 8.07 -2.39 -0.02 1.57 16 35 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.04 1.16 6.80 -2.39 -0.02 1.15 16 37 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.49 7.02 -2.39 -0.02 1.47 16 39 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.10 1.10 8.08 -2.39 -0.02 1.08 16 41 H 0.07 1.53 6.08 -2.39 -0.01 1.52 16 42 H 0.11 1.30 4.45 -2.39 -0.01 1.29 16 43 H 0.00 0.10 3.52 -2.39 -0.01 0.09 16 44 H 0.05 2.35 5.94 -2.39 -0.01 2.33 16 45 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 46 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.40 6.01 9.12 -74.06 -0.68 5.34 16 49 H 0.16 1.24 8.14 -2.38 -0.02 1.22 16 50 H 0.10 1.95 6.24 -2.39 -0.01 1.94 16 Total: -1.00 -88.07 381.71 0.50 -87.57 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.24 Total: 10.11 kcal Atomic # 6 Polarization: 24.22 SS G_CDS: 7.20 Total: 31.42 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -6.52 Total: -123.08 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -2.10 Total: -57.64 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 1.67 Total: 51.63 kcal Total: -88.07 0.50 -87.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047399821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.218 kcal (2) G-P(sol) polarization free energy of solvation -88.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds