Wall clock time and date at job start Sat Apr 11 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47423 * 2 1 4 4 N 1.46504 * 109.46856 * 119.99342 * 2 1 3 5 5 C 1.34413 * 124.35249 * 300.02611 * 4 2 1 6 6 O 1.21280 * 124.94285 * 0.40905 * 5 4 2 7 7 C 1.51281 * 110.11550 * 180.38316 * 5 4 2 8 8 C 1.54626 * 104.19654 * 16.25296 * 7 5 4 9 9 C 1.46766 * 124.34499 * 119.99937 * 4 2 1 10 10 H 1.09002 * 110.24599 * 44.00675 * 9 4 2 11 11 C 1.50701 * 110.24518 * 282.09365 * 9 4 2 12 12 O 1.21283 * 120.00266 * 1.22987 * 11 9 4 13 13 N 1.34783 * 119.99774 * 181.22998 * 11 9 4 14 14 C 1.46499 * 119.99647 * 0.02562 * 13 11 9 15 15 C 1.46502 * 119.99973 * 179.97438 * 13 11 9 16 16 H 1.08999 * 110.88301 * 357.57412 * 15 13 11 17 17 C 1.54903 * 111.00152 * 121.45354 * 15 13 11 18 18 N 1.47425 * 104.83129 * 155.08585 * 17 15 13 19 19 C 1.36931 * 125.64952 * 155.83865 * 18 17 15 20 20 H 1.07999 * 120.00211 * 359.97438 * 19 18 17 21 21 C 1.38823 * 120.00212 * 179.97438 * 19 18 17 22 22 N 1.31615 * 119.99533 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00103 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46981 * 89.99997 * 23 21 19 25 25 H 1.48497 * 109.46670 * 210.00004 * 23 21 19 26 26 H 1.48505 * 109.47167 * 329.99948 * 23 21 19 27 27 C 1.47023 * 108.70196 * 335.86774 * 18 17 15 28 28 C 1.54323 * 107.27083 * 1.06363 * 27 18 17 29 29 H 1.08998 * 110.72148 * 263.82609 * 28 27 18 30 30 O 1.42901 * 110.72086 * 140.55286 * 28 27 18 31 31 H 1.09000 * 109.47461 * 300.00368 * 1 2 3 32 32 H 1.09001 * 109.46740 * 60.00365 * 1 2 3 33 33 H 1.08998 * 109.47515 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47461 * 239.99632 * 2 1 3 35 35 H 1.08997 * 109.47443 * 179.97438 * 3 2 1 36 36 H 1.09007 * 109.46437 * 299.99570 * 3 2 1 37 37 H 1.09004 * 109.47456 * 59.99048 * 3 2 1 38 38 H 1.09008 * 110.48359 * 134.93216 * 7 5 4 39 39 H 1.08998 * 110.49066 * 257.43923 * 7 5 4 40 40 H 1.08995 * 110.96981 * 217.08137 * 8 7 5 41 41 H 1.09005 * 110.96946 * 93.31554 * 8 7 5 42 42 H 1.08995 * 109.47659 * 89.99999 * 14 13 11 43 43 H 1.09010 * 109.46597 * 209.99652 * 14 13 11 44 44 H 1.08993 * 109.47587 * 329.99343 * 14 13 11 45 45 H 1.08995 * 110.37245 * 273.92541 * 17 15 13 46 46 H 1.09005 * 110.36954 * 36.24804 * 17 15 13 47 47 H 0.96998 * 120.00200 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.87736 * 120.47445 * 27 18 17 49 49 H 1.08990 * 109.88864 * 241.48607 * 27 18 17 50 50 H 0.96700 * 114.00222 * 66.47784 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.7475 -0.3084 2.4562 6 8 1.0636 0.6457 2.7610 7 6 2.4195 -1.2420 3.4388 8 6 3.4717 -1.9925 2.5900 9 6 2.8655 -1.8887 1.1729 10 1 3.6566 -1.7769 0.4314 11 6 2.0349 -3.1088 0.8685 12 8 0.8448 -2.9966 0.6635 13 7 2.6147 -4.3247 0.8240 14 6 4.0521 -4.4603 1.0721 15 6 1.8072 -5.5109 0.5286 16 1 0.7562 -5.2464 0.4127 17 6 2.3372 -6.2442 -0.7287 18 7 1.8947 -7.6410 -0.5655 19 6 1.7082 -8.5427 -1.5790 20 1 1.8883 -8.2494 -2.6027 21 6 1.2875 -9.8339 -1.2907 22 7 1.0684 -10.1914 -0.0431 23 14 1.0323 -11.0637 -2.6734 24 1 2.2987 -11.7980 -2.9226 25 1 -0.0309 -12.0265 -2.2893 26 1 0.6263 -10.3440 -3.9073 27 6 1.6862 -7.9053 0.8657 28 6 1.9913 -6.5955 1.6227 29 1 3.0150 -6.5959 1.9969 30 8 1.0614 -6.4000 2.6899 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9562 -0.8901 37 1 1.6766 1.9564 0.8899 38 1 2.9044 -0.6747 4.2334 39 1 1.6954 -1.9408 3.8575 40 1 3.5555 -3.0331 2.9032 41 1 4.4395 -1.4932 2.6376 42 1 4.2238 -4.6188 2.1367 43 1 4.4390 -5.3111 0.5111 44 1 4.5632 -3.5520 0.7530 45 1 1.9042 -5.8121 -1.6308 46 1 3.4254 -6.1931 -0.7673 47 1 0.7741 -11.0934 0.1584 48 1 0.6521 -8.2024 1.0409 49 1 2.3600 -8.6944 1.1991 50 1 1.1349 -7.0521 3.4001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047499487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:08 Heat of formation + Delta-G solvation = -71.949643 kcal Electronic energy + Delta-G solvation = -31791.047341 eV Core-core repulsion = 27626.850679 eV Total energy + Delta-G solvation = -4164.196662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.29251 -39.51403 -37.88204 -36.27483 -35.51725 -35.12384 -34.69361 -31.97937 -30.23347 -29.27150 -27.98985 -27.33361 -27.19731 -26.63213 -24.48195 -23.01914 -22.49976 -20.87464 -20.48306 -19.26872 -18.78667 -17.59974 -17.18834 -16.91196 -16.72793 -16.12227 -15.63615 -15.36544 -15.00904 -14.66273 -14.29961 -14.13605 -13.97981 -13.82924 -13.62022 -13.52725 -13.20105 -12.94819 -12.91405 -12.73933 -12.48428 -12.20011 -12.16657 -12.03550 -11.88855 -11.79229 -11.53493 -11.47495 -11.30425 -11.27437 -11.18332 -10.91445 -10.83483 -10.20175 -9.99486 -9.95049 -9.88863 -9.68939 -9.37318 -8.77835 -8.77242 -8.46313 -6.97913 -5.81964 -3.17414 2.41975 2.56064 2.69446 3.11012 3.34718 3.40302 3.42221 4.04877 4.15159 4.29712 4.40550 4.51891 4.63266 4.75477 4.86436 4.93578 5.02806 5.10031 5.14804 5.17948 5.30346 5.37614 5.40134 5.46176 5.49728 5.55684 5.58271 5.61453 5.63125 5.68035 5.69771 5.77620 5.90603 5.97222 6.04912 6.06537 6.32638 6.40894 6.49835 6.54158 6.77993 6.99110 7.28463 7.40799 7.46280 7.68035 8.06648 8.10898 8.12747 8.22681 9.08499 9.68724 10.31179 11.29327 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.002879 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.504882 B = 9724.551933 C =10261.524690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.158 3.842 3 C -0.165 4.165 4 N -0.592 5.592 5 C 0.526 3.474 6 O -0.529 6.529 7 C -0.158 4.158 8 C -0.126 4.126 9 C 0.115 3.885 10 H 0.112 0.888 11 C 0.501 3.499 12 O -0.520 6.520 13 N -0.597 5.597 14 C 0.068 3.932 15 C 0.134 3.866 16 H 0.114 0.886 17 C 0.132 3.868 18 N -0.599 5.599 19 C -0.232 4.232 20 H 0.081 0.919 21 C -0.005 4.005 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.152 3.848 28 C 0.067 3.933 29 H 0.056 0.944 30 O -0.561 6.561 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.026 0.974 47 H 0.254 0.746 48 H 0.060 0.940 49 H 0.048 0.952 50 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.880 17.256 5.265 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.056 3.944 3 C -0.223 4.223 4 N -0.325 5.325 5 C 0.314 3.686 6 O -0.405 6.405 7 C -0.198 4.198 8 C -0.164 4.164 9 C 0.006 3.994 10 H 0.130 0.870 11 C 0.286 3.714 12 O -0.394 6.394 13 N -0.331 5.331 14 C -0.075 4.075 15 C 0.030 3.970 16 H 0.132 0.868 17 C 0.005 3.995 18 N -0.326 5.326 19 C -0.360 4.360 20 H 0.099 0.901 21 C -0.202 4.202 22 N -0.569 5.569 23 Si 0.745 3.255 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.027 3.973 28 C 0.006 3.994 29 H 0.074 0.926 30 O -0.366 6.366 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.043 0.957 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 8.574 18.164 4.838 20.661 hybrid contribution 0.187 -1.504 -0.434 1.576 sum 8.761 16.661 4.404 19.332 Atomic orbital electron populations 1.22187 0.94235 1.03896 1.02351 1.20910 0.95223 0.92268 0.85977 1.22189 1.00938 0.95917 1.03282 1.48114 1.51283 1.26441 1.06643 1.20749 0.79801 0.84477 0.83580 1.90683 1.39179 1.29301 1.81337 1.22386 0.99488 0.99385 0.98535 1.22744 0.98816 1.03348 0.91457 1.21619 0.92624 0.84637 1.00515 0.87014 1.20861 0.88645 0.84319 0.77592 1.90714 1.15161 1.85353 1.48199 1.47740 1.08958 1.06609 1.69766 1.21979 0.80661 1.03405 1.01501 1.22404 0.97197 0.82759 0.94609 0.86786 1.21775 0.96703 0.86373 0.94698 1.44229 1.79327 1.06319 1.02763 1.19064 1.39448 0.90524 0.86995 0.90148 1.24825 1.01191 0.97454 0.96720 1.69926 1.51918 1.18720 1.16303 0.86071 0.77512 0.80999 0.80884 1.21509 1.21575 1.20573 1.21840 1.01642 0.90749 0.83109 1.23524 0.91119 0.97239 0.87490 0.92620 1.86499 1.60403 1.56220 1.33449 0.91474 0.92075 0.90673 0.89795 0.92672 0.91435 0.91057 0.87749 0.87563 0.88144 0.88685 0.92241 0.89904 0.91110 0.93429 0.95677 0.93585 0.92219 0.93367 0.77949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.19 37.16 0.34 -1.85 16 2 C 0.16 1.79 3.30 -67.93 -0.22 1.56 16 3 C -0.17 -1.59 9.20 37.16 0.34 -1.25 16 4 N -0.59 -6.94 2.03 -158.67 -0.32 -7.26 16 5 C 0.53 6.85 7.41 -10.86 -0.08 6.77 16 6 O -0.53 -8.55 15.12 5.56 0.08 -8.47 16 7 C -0.16 -1.49 6.85 -26.74 -0.18 -1.67 16 8 C -0.13 -0.90 5.86 -25.10 -0.15 -1.05 16 9 C 0.11 1.12 2.54 -68.16 -0.17 0.94 16 10 H 0.11 0.79 7.39 -51.93 -0.38 0.41 16 11 C 0.50 6.99 7.08 -10.98 -0.08 6.91 16 12 O -0.52 -9.56 14.40 5.55 0.08 -9.48 16 13 N -0.60 -8.05 2.88 -171.48 -0.49 -8.55 16 14 C 0.07 0.61 7.71 59.85 0.46 1.07 16 15 C 0.13 2.40 3.18 -65.79 -0.21 2.20 16 16 H 0.11 2.46 7.01 -51.93 -0.36 2.09 16 17 C 0.13 2.59 6.80 -2.53 -0.02 2.57 16 18 N -0.60 -14.67 3.39 -170.08 -0.58 -15.25 16 19 C -0.23 -6.28 10.28 -15.06 -0.15 -6.43 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 22 N -0.92 -26.19 10.31 55.49 0.57 -25.61 16 23 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.15 3.51 5.15 -3.06 -0.02 3.49 16 28 C 0.07 1.19 3.89 -24.90 -0.10 1.10 16 29 H 0.06 0.87 7.05 -51.93 -0.37 0.50 16 30 O -0.56 -9.83 13.39 -35.23 -0.47 -10.30 16 31 H 0.07 0.98 6.77 -51.93 -0.35 0.63 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.17 6.79 -51.93 -0.35 0.82 16 34 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 37 H 0.07 0.83 6.80 -51.93 -0.35 0.48 16 38 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.10 0.70 5.62 -51.93 -0.29 0.41 16 41 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.45 6.90 -51.93 -0.36 0.09 16 43 H 0.08 0.82 6.30 -51.92 -0.33 0.49 16 44 H 0.07 0.42 6.22 -51.93 -0.32 0.09 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.03 0.46 6.28 -51.93 -0.33 0.13 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.06 1.58 7.30 -51.93 -0.38 1.21 16 49 H 0.05 1.20 7.49 -51.93 -0.39 0.81 16 50 H 0.37 5.00 9.12 45.56 0.42 5.41 16 LS Contribution 384.58 15.07 5.80 5.80 Total: -1.00 -35.25 384.58 -7.76 -43.02 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.07 Total: 5.44 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: -0.33 Total: 14.13 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.82 Total: -56.67 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.31 Total: -28.25 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.25 -7.76 -43.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047499487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.934 kcal (2) G-P(sol) polarization free energy of solvation -35.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds