Wall clock time and date at job start Sat Apr 11 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47423 * 2 1 4 4 N 1.46504 * 109.46856 * 119.99342 * 2 1 3 5 5 C 1.34413 * 124.35249 * 300.02611 * 4 2 1 6 6 O 1.21280 * 124.94285 * 0.40905 * 5 4 2 7 7 C 1.51281 * 110.11550 * 180.38316 * 5 4 2 8 8 C 1.54626 * 104.19654 * 16.25296 * 7 5 4 9 9 C 1.46766 * 124.34499 * 119.99937 * 4 2 1 10 10 H 1.09002 * 110.24599 * 44.00675 * 9 4 2 11 11 C 1.50701 * 110.24518 * 282.09365 * 9 4 2 12 12 O 1.21283 * 120.00266 * 1.22987 * 11 9 4 13 13 N 1.34783 * 119.99774 * 181.22998 * 11 9 4 14 14 C 1.46499 * 119.99647 * 0.02562 * 13 11 9 15 15 C 1.46502 * 119.99973 * 179.97438 * 13 11 9 16 16 H 1.08999 * 110.88301 * 357.57412 * 15 13 11 17 17 C 1.54903 * 111.00152 * 121.45354 * 15 13 11 18 18 N 1.47425 * 104.83129 * 155.08585 * 17 15 13 19 19 C 1.36931 * 125.64952 * 155.83865 * 18 17 15 20 20 H 1.07999 * 120.00211 * 359.97438 * 19 18 17 21 21 C 1.38823 * 120.00212 * 179.97438 * 19 18 17 22 22 N 1.31615 * 119.99533 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00103 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46981 * 89.99997 * 23 21 19 25 25 H 1.48497 * 109.46670 * 210.00004 * 23 21 19 26 26 H 1.48505 * 109.47167 * 329.99948 * 23 21 19 27 27 C 1.47023 * 108.70196 * 335.86774 * 18 17 15 28 28 C 1.54323 * 107.27083 * 1.06363 * 27 18 17 29 29 H 1.08998 * 110.72148 * 263.82609 * 28 27 18 30 30 O 1.42901 * 110.72086 * 140.55286 * 28 27 18 31 31 H 1.09000 * 109.47461 * 300.00368 * 1 2 3 32 32 H 1.09001 * 109.46740 * 60.00365 * 1 2 3 33 33 H 1.08998 * 109.47515 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47461 * 239.99632 * 2 1 3 35 35 H 1.08997 * 109.47443 * 179.97438 * 3 2 1 36 36 H 1.09007 * 109.46437 * 299.99570 * 3 2 1 37 37 H 1.09004 * 109.47456 * 59.99048 * 3 2 1 38 38 H 1.09008 * 110.48359 * 134.93216 * 7 5 4 39 39 H 1.08998 * 110.49066 * 257.43923 * 7 5 4 40 40 H 1.08995 * 110.96981 * 217.08137 * 8 7 5 41 41 H 1.09005 * 110.96946 * 93.31554 * 8 7 5 42 42 H 1.08995 * 109.47659 * 89.99999 * 14 13 11 43 43 H 1.09010 * 109.46597 * 209.99652 * 14 13 11 44 44 H 1.08993 * 109.47587 * 329.99343 * 14 13 11 45 45 H 1.08995 * 110.37245 * 273.92541 * 17 15 13 46 46 H 1.09005 * 110.36954 * 36.24804 * 17 15 13 47 47 H 0.96998 * 120.00200 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.87736 * 120.47445 * 27 18 17 49 49 H 1.08990 * 109.88864 * 241.48607 * 27 18 17 50 50 H 0.96700 * 114.00222 * 66.47784 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.7475 -0.3084 2.4562 6 8 1.0636 0.6457 2.7610 7 6 2.4195 -1.2420 3.4388 8 6 3.4717 -1.9925 2.5900 9 6 2.8655 -1.8887 1.1729 10 1 3.6566 -1.7769 0.4314 11 6 2.0349 -3.1088 0.8685 12 8 0.8448 -2.9966 0.6635 13 7 2.6147 -4.3247 0.8240 14 6 4.0521 -4.4603 1.0721 15 6 1.8072 -5.5109 0.5286 16 1 0.7562 -5.2464 0.4127 17 6 2.3372 -6.2442 -0.7287 18 7 1.8947 -7.6410 -0.5655 19 6 1.7082 -8.5427 -1.5790 20 1 1.8883 -8.2494 -2.6027 21 6 1.2875 -9.8339 -1.2907 22 7 1.0684 -10.1914 -0.0431 23 14 1.0323 -11.0637 -2.6734 24 1 2.2987 -11.7980 -2.9226 25 1 -0.0309 -12.0265 -2.2893 26 1 0.6263 -10.3440 -3.9073 27 6 1.6862 -7.9053 0.8657 28 6 1.9913 -6.5955 1.6227 29 1 3.0150 -6.5959 1.9969 30 8 1.0614 -6.4000 2.6899 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9562 -0.8901 37 1 1.6766 1.9564 0.8899 38 1 2.9044 -0.6747 4.2334 39 1 1.6954 -1.9408 3.8575 40 1 3.5555 -3.0331 2.9032 41 1 4.4395 -1.4932 2.6376 42 1 4.2238 -4.6188 2.1367 43 1 4.4390 -5.3111 0.5111 44 1 4.5632 -3.5520 0.7530 45 1 1.9042 -5.8121 -1.6308 46 1 3.4254 -6.1931 -0.7673 47 1 0.7741 -11.0934 0.1584 48 1 0.6521 -8.2024 1.0409 49 1 2.3600 -8.6944 1.1991 50 1 1.1349 -7.0521 3.4001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047499487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:07 Heat of formation + Delta-G solvation = -99.136401 kcal Electronic energy + Delta-G solvation = -31792.226247 eV Core-core repulsion = 27626.850679 eV Total energy + Delta-G solvation = -4165.375568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.22219 -40.70852 -39.29019 -37.30194 -36.72072 -36.50430 -35.80329 -33.81829 -31.04912 -30.72419 -29.43874 -28.48020 -28.12223 -27.74793 -26.24443 -23.92101 -23.34945 -22.30282 -22.03302 -20.48640 -19.71638 -19.01126 -18.71846 -17.98112 -17.83237 -17.45500 -16.74669 -16.56878 -16.21524 -16.01961 -15.74151 -15.33333 -15.15369 -14.69422 -14.61919 -14.53453 -14.48319 -14.30954 -14.04755 -13.95739 -13.80668 -13.52436 -13.16722 -13.06539 -12.99412 -12.97227 -12.74405 -12.67607 -12.64220 -12.48365 -12.34522 -12.10690 -12.08572 -12.05845 -11.87790 -11.52033 -11.08097 -10.87773 -10.77148 -10.64715 -9.73798 -9.65757 -8.94679 -7.88687 -5.26064 1.42936 1.46152 1.47898 1.55277 1.56304 1.79888 2.11849 2.47749 3.14421 3.27067 3.32645 3.45831 3.51086 3.60868 3.87243 3.88576 3.96404 4.08447 4.11340 4.15140 4.17543 4.28302 4.35015 4.43720 4.49613 4.56617 4.66681 4.70316 4.74069 4.76368 4.79718 4.88874 4.89926 4.93899 5.04635 5.06747 5.13000 5.20061 5.31928 5.37882 5.43727 5.53977 5.62557 5.66841 6.09163 6.13249 6.43574 6.86297 7.03941 7.11116 7.19994 7.69668 8.31698 9.20741 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.002879 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.504882 B = 9724.551933 C =10261.524690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.151 3.849 3 C -0.154 4.154 4 N -0.593 5.593 5 C 0.511 3.489 6 O -0.572 6.572 7 C -0.157 4.157 8 C -0.111 4.111 9 C 0.118 3.882 10 H 0.155 0.845 11 C 0.494 3.506 12 O -0.576 6.576 13 N -0.592 5.592 14 C 0.054 3.946 15 C 0.148 3.852 16 H 0.069 0.931 17 C 0.134 3.866 18 N -0.622 5.622 19 C -0.246 4.246 20 H 0.085 0.915 21 C -0.062 4.062 22 N -0.949 5.949 23 Si 0.979 3.021 24 H -0.280 1.280 25 H -0.297 1.297 26 H -0.271 1.271 27 C 0.162 3.838 28 C 0.088 3.912 29 H 0.094 0.906 30 O -0.573 6.573 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.127 0.873 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.140 0.860 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.036 0.964 46 H 0.058 0.942 47 H 0.248 0.752 48 H 0.012 0.988 49 H 0.025 0.975 50 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.721 18.519 5.107 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.049 3.951 3 C -0.212 4.212 4 N -0.325 5.325 5 C 0.300 3.700 6 O -0.452 6.452 7 C -0.197 4.197 8 C -0.149 4.149 9 C 0.010 3.990 10 H 0.173 0.827 11 C 0.282 3.718 12 O -0.454 6.454 13 N -0.324 5.324 14 C -0.086 4.086 15 C 0.042 3.958 16 H 0.087 0.913 17 C 0.008 3.992 18 N -0.350 5.350 19 C -0.374 4.374 20 H 0.103 0.897 21 C -0.256 4.256 22 N -0.597 5.597 23 Si 0.807 3.193 24 H -0.207 1.207 25 H -0.223 1.223 26 H -0.196 1.196 27 C 0.036 3.964 28 C 0.027 3.973 29 H 0.112 0.888 30 O -0.380 6.380 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.146 0.854 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.158 0.842 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.132 0.868 45 H 0.055 0.945 46 H 0.075 0.925 47 H 0.057 0.943 48 H 0.030 0.970 49 H 0.043 0.957 50 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 12.484 19.438 4.681 23.572 hybrid contribution -1.077 -1.871 -0.399 2.195 sum 11.407 17.567 4.282 21.379 Atomic orbital electron populations 1.22107 0.96324 1.01547 1.02094 1.21035 0.93677 0.93757 0.86619 1.22083 1.02015 0.94295 1.02768 1.48285 1.51129 1.26673 1.06390 1.21482 0.79388 0.84390 0.84720 1.90653 1.41029 1.31376 1.82138 1.22431 0.99818 0.98732 0.98672 1.22896 0.99575 1.04101 0.88293 1.21926 0.92082 0.81348 1.03628 0.82739 1.21796 0.88419 0.85400 0.76227 1.90715 1.17966 1.86157 1.50601 1.47739 1.10552 1.04899 1.69243 1.22424 0.77458 1.05506 1.03260 1.21800 0.95694 0.84468 0.93860 0.91318 1.21906 0.98143 0.83999 0.95177 1.44502 1.79489 1.08056 1.02908 1.19453 1.38735 0.91250 0.87995 0.89704 1.25654 1.01644 0.99331 0.98932 1.70142 1.52990 1.18582 1.18029 0.85069 0.77230 0.78525 0.78439 1.20666 1.22340 1.19618 1.21601 0.98211 0.93120 0.83479 1.23293 0.92788 0.94053 0.87148 0.88834 1.86474 1.60792 1.56923 1.33836 0.93836 0.90207 0.93910 0.88332 0.90692 0.89931 0.93554 0.85440 0.89116 0.87194 0.84159 0.89799 0.90475 0.86814 0.94523 0.92456 0.94277 0.96994 0.95664 0.75848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.39 9.19 71.98 0.66 -3.73 16 2 C 0.15 3.23 3.30 44.99 0.15 3.38 16 3 C -0.15 -2.66 9.20 71.98 0.66 -2.00 16 4 N -0.59 -12.80 2.03 -774.51 -1.57 -14.37 16 5 C 0.51 12.82 7.41 87.90 0.65 13.47 16 6 O -0.57 -18.93 15.12 -3.03 -0.05 -18.98 16 7 C -0.16 -2.54 6.85 30.59 0.21 -2.33 16 8 C -0.11 -1.00 5.86 31.65 0.19 -0.81 16 9 C 0.12 1.82 2.54 44.70 0.11 1.93 16 10 H 0.16 1.16 7.39 -2.39 -0.02 1.14 16 11 C 0.49 12.85 7.08 87.66 0.62 13.47 16 12 O -0.58 -21.69 14.40 -3.04 -0.04 -21.73 16 13 N -0.59 -14.35 2.88 -814.83 -2.35 -16.71 16 14 C 0.05 0.68 7.71 127.77 0.98 1.67 16 15 C 0.15 5.23 3.18 46.38 0.15 5.38 16 16 H 0.07 3.10 7.01 -2.39 -0.02 3.08 16 17 C 0.13 5.18 6.80 86.85 0.59 5.77 16 18 N -0.62 -30.99 3.39 -692.01 -2.35 -33.33 16 19 C -0.25 -13.47 10.28 84.04 0.86 -12.61 16 20 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 21 C -0.06 -3.48 5.49 84.87 0.47 -3.01 16 22 N -0.95 -55.78 10.31 21.65 0.22 -55.56 16 23 Si 0.98 44.96 29.55 68.60 2.03 46.98 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 25 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 C 0.16 7.68 5.15 86.73 0.45 8.13 16 28 C 0.09 3.07 3.89 31.78 0.12 3.19 16 29 H 0.09 2.62 7.05 -2.39 -0.02 2.60 16 30 O -0.57 -19.89 13.39 -148.98 -1.99 -21.88 16 31 H 0.04 1.36 6.77 -2.39 -0.02 1.34 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.42 6.79 -2.39 -0.02 1.40 16 34 H 0.10 1.82 8.07 -2.39 -0.02 1.80 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.15 8.14 -2.38 -0.02 1.14 16 37 H 0.05 1.05 6.80 -2.39 -0.02 1.04 16 38 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.11 0.87 5.62 -2.39 -0.01 0.85 16 41 H 0.14 0.14 8.14 -2.38 -0.02 0.12 16 42 H 0.08 0.73 6.90 -2.39 -0.02 0.71 16 43 H 0.08 1.13 6.30 -2.38 -0.02 1.12 16 44 H 0.11 0.50 6.22 -2.39 -0.01 0.49 16 45 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.06 1.90 6.28 -2.38 -0.01 1.88 16 47 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 48 H 0.01 0.67 7.30 -2.39 -0.02 0.65 16 49 H 0.03 1.29 7.49 -2.39 -0.02 1.27 16 50 H 0.39 10.21 9.12 -74.06 -0.68 9.54 16 Total: -1.00 -85.42 384.58 1.06 -84.36 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.29 Total: 19.32 kcal Atomic # 6 Polarization: 25.02 SS G_CDS: 6.88 Total: 31.89 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -6.05 Total: -119.97 kcal Atomic # 8 Polarization: -60.51 SS G_CDS: -2.08 Total: -62.59 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -85.42 1.06 -84.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047499487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.773 kcal (2) G-P(sol) polarization free energy of solvation -85.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds