Wall clock time and date at job start Sat Apr 11 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47079 * 2 1 4 4 N 1.46497 * 109.47184 * 179.97438 * 3 2 1 5 5 C 1.46762 * 124.34850 * 270.19433 * 4 3 2 6 6 C 1.54479 * 105.53509 * 163.21275 * 5 4 3 7 7 H 1.09006 * 110.97141 * 267.09046 * 6 5 4 8 8 C 1.50700 * 111.00020 * 143.34369 * 6 5 4 9 9 O 1.21282 * 120.00198 * 6.14673 * 8 6 5 10 10 N 1.34776 * 119.99895 * 186.15222 * 8 6 5 11 11 C 1.46501 * 120.00104 * 359.97438 * 10 8 6 12 12 C 1.46498 * 120.00388 * 179.97438 * 10 8 6 13 13 H 1.09010 * 110.63695 * 3.14196 * 12 10 8 14 14 C 1.54325 * 110.72223 * 126.47365 * 12 10 8 15 15 N 1.47020 * 107.26923 * 140.56284 * 14 12 10 16 16 C 1.36942 * 125.64625 * 181.01653 * 15 14 12 17 17 H 1.07997 * 119.99974 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99436 * 180.02562 * 16 15 14 19 19 N 1.31612 * 120.00569 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99471 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47442 * 60.00208 * 20 18 16 22 22 H 1.48497 * 109.47003 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47161 * 300.00261 * 20 18 16 24 24 C 1.47421 * 108.70597 * 1.05753 * 15 14 12 25 25 C 1.54913 * 104.83242 * 335.87437 * 24 15 14 26 26 H 1.09001 * 111.00453 * 278.93590 * 25 24 15 27 27 O 1.42898 * 111.03915 * 155.09388 * 25 24 15 28 28 C 1.54623 * 101.76448 * 25.20998 * 6 5 4 29 29 C 1.34417 * 124.35094 * 90.02197 * 4 3 2 30 30 O 1.21283 * 124.94355 * 0.43141 * 29 4 3 31 31 H 1.09002 * 109.47048 * 299.99995 * 1 2 3 32 32 H 1.08999 * 109.46948 * 60.00314 * 1 2 3 33 33 H 1.09003 * 109.47142 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47370 * 239.99745 * 2 1 3 35 35 H 1.08999 * 109.46948 * 119.99685 * 2 1 3 36 36 H 1.09002 * 109.47177 * 60.00084 * 3 2 1 37 37 H 1.08999 * 109.46974 * 299.99669 * 3 2 1 38 38 H 1.09004 * 110.38933 * 44.10688 * 5 4 3 39 39 H 1.08995 * 110.11843 * 282.18104 * 5 4 3 40 40 H 1.09007 * 109.46664 * 90.00047 * 11 10 8 41 41 H 1.08999 * 109.47640 * 210.00056 * 11 10 8 42 42 H 1.08999 * 109.47561 * 330.00558 * 11 10 8 43 43 H 1.09001 * 109.88315 * 259.97681 * 14 12 10 44 44 H 1.09002 * 109.88068 * 21.14498 * 14 12 10 45 45 H 0.97001 * 120.00133 * 179.97438 * 19 18 16 46 46 H 1.09002 * 110.37140 * 217.03923 * 24 15 14 47 47 H 1.09002 * 110.45921 * 94.76114 * 24 15 14 48 48 H 0.96706 * 113.99489 * 67.78479 * 27 25 24 49 49 H 1.09000 * 110.48720 * 216.52574 * 28 6 5 50 50 H 1.08997 * 110.48721 * 93.88170 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.3325 1.4386 1.2127 6 6 5.7426 1.0103 0.7495 7 1 5.8734 -0.0678 0.8435 8 6 6.8101 1.7490 1.5149 9 8 6.5033 2.4715 2.4395 10 7 8.1057 1.6069 1.1719 11 6 8.4763 0.7338 0.0554 12 6 9.1434 2.3254 1.9156 13 1 8.7061 2.8832 2.7437 14 6 10.2273 1.3500 2.4211 15 7 11.5260 2.0207 2.2629 16 6 12.7455 1.4830 2.5778 17 1 12.8069 0.4825 2.9797 18 6 13.9025 2.2241 2.3804 19 7 13.8275 3.4436 1.8911 20 14 15.5660 1.4904 2.8092 21 1 15.7864 0.2605 2.0067 22 1 16.6345 2.4766 2.5080 23 1 15.5995 1.1508 4.2546 24 6 11.2981 3.3681 1.7100 25 6 9.9375 3.2706 0.9757 26 1 10.0580 2.8276 -0.0129 27 8 9.3094 4.5510 0.8872 28 6 5.7301 1.4387 -0.7362 29 6 4.2639 1.4428 -1.1088 30 8 3.8356 1.4506 -2.2435 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.9408 0.7251 1.9377 39 1 4.3655 2.4376 1.6473 40 1 8.4837 1.3104 -0.8697 41 1 9.4684 0.3186 0.2326 42 1 7.7526 -0.0770 -0.0277 43 1 10.0557 1.1177 3.4722 44 1 10.2079 0.4351 1.8290 45 1 14.6361 3.9615 1.7535 46 1 12.0900 3.6292 1.0081 47 1 11.2445 4.1048 2.5116 48 1 9.7700 5.1760 0.3106 49 1 6.2765 0.7188 -1.3454 50 1 6.1553 2.4360 -0.8492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047548001.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:12 Heat of formation + Delta-G solvation = -80.169703 kcal Electronic energy + Delta-G solvation = -30739.273146 eV Core-core repulsion = 26574.720035 eV Total energy + Delta-G solvation = -4164.553110 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.14469 -39.67418 -37.94103 -36.56914 -35.35755 -35.11522 -34.78217 -32.25986 -31.51050 -28.74801 -27.99532 -27.40804 -26.84733 -26.45787 -24.60155 -23.16211 -22.12084 -20.52851 -20.37293 -19.67506 -18.87872 -17.74560 -17.16258 -17.11999 -16.81190 -16.18774 -15.92293 -15.32044 -15.21376 -14.83738 -14.80087 -14.07900 -14.02904 -13.97784 -13.90342 -13.59442 -13.26666 -13.07712 -13.03770 -12.70558 -12.49245 -12.31908 -12.28799 -12.16585 -11.76164 -11.73631 -11.71918 -11.56934 -11.53234 -11.26191 -11.09290 -11.01561 -10.86323 -10.27735 -10.17762 -9.99325 -9.77985 -9.73663 -9.30185 -8.97971 -8.77500 -8.45497 -6.99352 -5.77534 -3.21408 2.33686 2.56170 2.63225 2.99872 3.33798 3.38513 3.39670 3.93689 4.05998 4.36078 4.41222 4.54647 4.58569 4.61271 4.65146 4.82922 4.88017 5.05853 5.09819 5.19832 5.24783 5.25280 5.27701 5.35050 5.39544 5.43464 5.49115 5.55480 5.59308 5.63638 5.66594 5.72036 5.77178 5.84298 5.85683 6.02565 6.11304 6.25247 6.37163 6.53789 6.80512 6.82476 7.28841 7.42218 7.48707 7.67168 7.91199 8.10770 8.15958 8.22560 9.07151 9.67815 10.29692 11.25948 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028117 B = 0.002279 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.583213 B =12284.265641 C =12430.839035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.125 3.875 4 N -0.620 5.620 5 C 0.118 3.882 6 C -0.121 4.121 7 H 0.118 0.882 8 C 0.527 3.473 9 O -0.533 6.533 10 N -0.595 5.595 11 C 0.066 3.934 12 C 0.136 3.864 13 H 0.113 0.887 14 C 0.130 3.870 15 N -0.599 5.599 16 C -0.227 4.227 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.918 3.082 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.284 1.284 24 C 0.129 3.871 25 C 0.065 3.935 26 H 0.060 0.940 27 O -0.564 6.564 28 C -0.146 4.146 29 C 0.521 3.479 30 O -0.532 6.532 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.032 0.968 44 H 0.035 0.965 45 H 0.255 0.745 46 H 0.111 0.889 47 H 0.025 0.975 48 H 0.375 0.625 49 H 0.112 0.888 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.470 -6.178 -4.970 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.004 3.996 4 N -0.353 5.353 5 C -0.005 4.005 6 C -0.143 4.143 7 H 0.136 0.864 8 C 0.313 3.687 9 O -0.410 6.410 10 N -0.326 5.326 11 C -0.077 4.077 12 C 0.032 3.968 13 H 0.131 0.869 14 C 0.003 3.997 15 N -0.326 5.326 16 C -0.355 4.355 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.748 3.252 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.003 3.997 25 C 0.004 3.996 26 H 0.077 0.923 27 O -0.368 6.368 28 C -0.186 4.186 29 C 0.308 3.692 30 O -0.408 6.408 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.129 0.871 47 H 0.043 0.957 48 H 0.221 0.779 49 H 0.130 0.870 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -21.132 -6.000 -4.663 22.456 hybrid contribution 1.401 -0.217 -0.058 1.419 sum -19.731 -6.217 -4.720 21.219 Atomic orbital electron populations 1.21692 0.94926 1.02084 1.02036 1.21918 0.96336 0.97070 1.02701 1.21459 0.77657 0.97152 1.03375 1.48350 1.06323 1.73388 1.07285 1.21979 0.87759 1.03961 0.86811 1.22207 0.94501 1.02286 0.95311 0.86419 1.19955 0.82977 0.81783 0.83965 1.90714 1.81368 1.38927 1.29946 1.47720 1.05815 1.46005 1.33107 1.21995 1.02898 0.93742 0.89036 1.22190 0.87253 0.92367 0.94941 0.86948 1.21555 0.85712 0.94283 0.98144 1.44261 1.00226 1.12940 1.75207 1.19025 0.81805 0.98443 1.36178 0.90233 1.24816 0.98062 0.96261 1.01304 1.69737 1.27062 1.09779 1.50430 0.86106 0.83039 0.77852 0.78199 1.21048 1.21500 1.21093 1.22557 0.92646 0.87035 0.97477 1.23721 0.94721 0.83333 0.97841 0.92250 1.86443 1.54237 1.24206 1.71899 1.22457 0.95360 1.05729 0.95059 1.20800 0.88964 0.74995 0.84395 1.90728 1.78585 1.50477 1.21024 0.92488 0.92451 0.92362 0.91540 0.91647 0.90149 0.89918 0.89721 0.88942 0.92262 0.89554 0.91108 0.95011 0.94769 0.93468 0.87091 0.95726 0.77864 0.87009 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.14 -1.00 6.26 -26.73 -0.17 -1.17 16 3 C 0.13 1.01 5.93 -4.04 -0.02 0.98 16 4 N -0.62 -6.03 2.93 -172.42 -0.51 -6.53 16 5 C 0.12 1.08 6.67 -3.12 -0.02 1.06 16 6 C -0.12 -1.14 2.57 -90.14 -0.23 -1.37 16 7 H 0.12 0.84 7.56 -51.93 -0.39 0.44 16 8 C 0.53 7.18 6.99 -10.99 -0.08 7.10 16 9 O -0.53 -9.25 14.94 5.56 0.08 -9.17 16 10 N -0.59 -8.34 2.89 -171.83 -0.50 -8.84 16 11 C 0.07 0.70 7.84 59.85 0.47 1.17 16 12 C 0.14 2.44 3.10 -66.10 -0.20 2.24 16 13 H 0.11 2.30 7.00 -51.92 -0.36 1.94 16 14 C 0.13 2.57 6.80 -3.06 -0.02 2.55 16 15 N -0.60 -14.54 3.39 -170.07 -0.58 -15.12 16 16 C -0.23 -6.00 10.27 -15.06 -0.15 -6.16 16 17 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 18 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 19 N -0.92 -25.73 10.09 55.49 0.56 -25.17 16 20 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 C 0.13 2.99 5.62 -2.53 -0.01 2.97 16 25 C 0.06 1.20 4.00 -24.58 -0.10 1.10 16 26 H 0.06 1.04 7.29 -51.93 -0.38 0.66 16 27 O -0.56 -10.01 13.47 -35.23 -0.47 -10.48 16 28 C -0.15 -1.39 5.04 -26.74 -0.13 -1.52 16 29 C 0.52 6.10 8.02 -10.86 -0.09 6.01 16 30 O -0.53 -8.09 17.59 5.55 0.10 -7.99 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.01 7.06 -51.93 -0.37 0.64 16 40 H 0.06 0.58 7.84 -51.92 -0.41 0.17 16 41 H 0.09 1.03 6.08 -51.93 -0.32 0.71 16 42 H 0.07 0.53 5.96 -51.93 -0.31 0.22 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.03 0.63 5.93 -51.93 -0.31 0.32 16 45 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.11 2.84 5.88 -51.93 -0.31 2.53 16 47 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.37 5.15 9.12 45.56 0.42 5.56 16 49 H 0.11 0.86 7.10 -51.93 -0.37 0.49 16 50 H 0.11 1.17 7.89 -51.93 -0.41 0.76 16 LS Contribution 392.75 15.07 5.92 5.92 Total: -1.00 -33.82 392.75 -8.18 -42.01 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.27 Total: 5.01 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -0.49 Total: 14.16 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -1.02 Total: -55.66 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.29 Total: -27.64 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.82 -8.18 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047548001.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.164 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds