Wall clock time and date at job start Sat Apr 11 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47079 * 2 1 4 4 N 1.46497 * 109.47184 * 179.97438 * 3 2 1 5 5 C 1.46762 * 124.34850 * 270.19433 * 4 3 2 6 6 C 1.54479 * 105.53509 * 163.21275 * 5 4 3 7 7 H 1.09006 * 110.97141 * 267.09046 * 6 5 4 8 8 C 1.50700 * 111.00020 * 143.34369 * 6 5 4 9 9 O 1.21282 * 120.00198 * 6.14673 * 8 6 5 10 10 N 1.34776 * 119.99895 * 186.15222 * 8 6 5 11 11 C 1.46501 * 120.00104 * 359.97438 * 10 8 6 12 12 C 1.46498 * 120.00388 * 179.97438 * 10 8 6 13 13 H 1.09010 * 110.63695 * 3.14196 * 12 10 8 14 14 C 1.54325 * 110.72223 * 126.47365 * 12 10 8 15 15 N 1.47020 * 107.26923 * 140.56284 * 14 12 10 16 16 C 1.36942 * 125.64625 * 181.01653 * 15 14 12 17 17 H 1.07997 * 119.99974 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99436 * 180.02562 * 16 15 14 19 19 N 1.31612 * 120.00569 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99471 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47442 * 60.00208 * 20 18 16 22 22 H 1.48497 * 109.47003 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47161 * 300.00261 * 20 18 16 24 24 C 1.47421 * 108.70597 * 1.05753 * 15 14 12 25 25 C 1.54913 * 104.83242 * 335.87437 * 24 15 14 26 26 H 1.09001 * 111.00453 * 278.93590 * 25 24 15 27 27 O 1.42898 * 111.03915 * 155.09388 * 25 24 15 28 28 C 1.54623 * 101.76448 * 25.20998 * 6 5 4 29 29 C 1.34417 * 124.35094 * 90.02197 * 4 3 2 30 30 O 1.21283 * 124.94355 * 0.43141 * 29 4 3 31 31 H 1.09002 * 109.47048 * 299.99995 * 1 2 3 32 32 H 1.08999 * 109.46948 * 60.00314 * 1 2 3 33 33 H 1.09003 * 109.47142 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47370 * 239.99745 * 2 1 3 35 35 H 1.08999 * 109.46948 * 119.99685 * 2 1 3 36 36 H 1.09002 * 109.47177 * 60.00084 * 3 2 1 37 37 H 1.08999 * 109.46974 * 299.99669 * 3 2 1 38 38 H 1.09004 * 110.38933 * 44.10688 * 5 4 3 39 39 H 1.08995 * 110.11843 * 282.18104 * 5 4 3 40 40 H 1.09007 * 109.46664 * 90.00047 * 11 10 8 41 41 H 1.08999 * 109.47640 * 210.00056 * 11 10 8 42 42 H 1.08999 * 109.47561 * 330.00558 * 11 10 8 43 43 H 1.09001 * 109.88315 * 259.97681 * 14 12 10 44 44 H 1.09002 * 109.88068 * 21.14498 * 14 12 10 45 45 H 0.97001 * 120.00133 * 179.97438 * 19 18 16 46 46 H 1.09002 * 110.37140 * 217.03923 * 24 15 14 47 47 H 1.09002 * 110.45921 * 94.76114 * 24 15 14 48 48 H 0.96706 * 113.99489 * 67.78479 * 27 25 24 49 49 H 1.09000 * 110.48720 * 216.52574 * 28 6 5 50 50 H 1.08997 * 110.48721 * 93.88170 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.3325 1.4386 1.2127 6 6 5.7426 1.0103 0.7495 7 1 5.8734 -0.0678 0.8435 8 6 6.8101 1.7490 1.5149 9 8 6.5033 2.4715 2.4395 10 7 8.1057 1.6069 1.1719 11 6 8.4763 0.7338 0.0554 12 6 9.1434 2.3254 1.9156 13 1 8.7061 2.8832 2.7437 14 6 10.2273 1.3500 2.4211 15 7 11.5260 2.0207 2.2629 16 6 12.7455 1.4830 2.5778 17 1 12.8069 0.4825 2.9797 18 6 13.9025 2.2241 2.3804 19 7 13.8275 3.4436 1.8911 20 14 15.5660 1.4904 2.8092 21 1 15.7864 0.2605 2.0067 22 1 16.6345 2.4766 2.5080 23 1 15.5995 1.1508 4.2546 24 6 11.2981 3.3681 1.7100 25 6 9.9375 3.2706 0.9757 26 1 10.0580 2.8276 -0.0129 27 8 9.3094 4.5510 0.8872 28 6 5.7301 1.4387 -0.7362 29 6 4.2639 1.4428 -1.1088 30 8 3.8356 1.4506 -2.2435 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.9408 0.7251 1.9377 39 1 4.3655 2.4376 1.6473 40 1 8.4837 1.3104 -0.8697 41 1 9.4684 0.3186 0.2326 42 1 7.7526 -0.0770 -0.0277 43 1 10.0557 1.1177 3.4722 44 1 10.2079 0.4351 1.8290 45 1 14.6361 3.9615 1.7535 46 1 12.0900 3.6292 1.0081 47 1 11.2445 4.1048 2.5116 48 1 9.7700 5.1760 0.3106 49 1 6.2765 0.7188 -1.3454 50 1 6.1553 2.4360 -0.8492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047548001.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:11 Heat of formation + Delta-G solvation = -105.092254 kcal Electronic energy + Delta-G solvation = -30740.353868 eV Core-core repulsion = 26574.720035 eV Total energy + Delta-G solvation = -4165.633833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.07283 -40.81314 -39.37837 -37.48779 -36.73306 -36.38186 -35.73365 -33.87262 -32.49102 -30.37913 -29.00312 -28.79337 -27.82662 -27.30065 -26.26497 -24.19376 -22.71322 -22.32143 -21.62071 -20.55792 -20.02049 -19.03991 -18.80207 -18.12082 -17.86609 -17.44426 -16.97744 -16.70288 -16.23088 -16.13250 -15.58257 -15.53104 -15.34849 -14.91196 -14.76432 -14.69337 -14.61564 -14.40085 -13.94763 -13.83949 -13.74406 -13.50146 -13.17817 -13.08661 -13.03764 -12.97759 -12.78552 -12.70804 -12.65924 -12.45568 -12.42677 -12.18982 -12.07839 -11.88577 -11.65104 -11.44437 -11.21629 -10.98226 -10.75182 -10.67897 -9.77230 -9.66324 -8.95214 -7.79505 -5.26343 1.45594 1.49059 1.51582 1.52403 1.58095 1.73434 2.04148 2.48846 3.05883 3.14097 3.29151 3.32438 3.60653 3.69895 3.82286 3.85743 3.98673 4.03759 4.05080 4.11929 4.19041 4.32850 4.34506 4.46929 4.49261 4.52706 4.55939 4.60554 4.65003 4.67586 4.77091 4.82303 4.87405 4.94742 5.01416 5.04061 5.15846 5.19633 5.33639 5.38079 5.46601 5.50245 5.55392 5.69621 6.02774 6.21967 6.37469 6.84683 7.04785 7.05594 7.09724 7.71151 8.33223 9.21717 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028117 B = 0.002279 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.583213 B =12284.265641 C =12430.839035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.119 3.881 4 N -0.614 5.614 5 C 0.119 3.881 6 C -0.106 4.106 7 H 0.155 0.845 8 C 0.526 3.474 9 O -0.575 6.575 10 N -0.594 5.594 11 C 0.058 3.942 12 C 0.149 3.851 13 H 0.083 0.917 14 C 0.131 3.869 15 N -0.618 5.618 16 C -0.239 4.239 17 H 0.087 0.913 18 C -0.065 4.065 19 N -0.949 5.949 20 Si 0.982 3.018 21 H -0.272 1.272 22 H -0.296 1.296 23 H -0.281 1.281 24 C 0.135 3.865 25 C 0.084 3.916 26 H 0.079 0.921 27 O -0.571 6.571 28 C -0.139 4.139 29 C 0.514 3.486 30 O -0.574 6.574 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.024 0.976 44 H 0.060 0.940 45 H 0.249 0.751 46 H 0.086 0.914 47 H -0.014 1.014 48 H 0.392 0.608 49 H 0.138 0.862 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.602 -8.483 -5.429 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C -0.002 4.002 4 N -0.347 5.347 5 C -0.004 4.004 6 C -0.127 4.127 7 H 0.173 0.827 8 C 0.314 3.686 9 O -0.454 6.454 10 N -0.325 5.325 11 C -0.083 4.083 12 C 0.044 3.956 13 H 0.102 0.898 14 C 0.005 3.995 15 N -0.346 5.346 16 C -0.367 4.367 17 H 0.105 0.895 18 C -0.257 4.257 19 N -0.598 5.598 20 Si 0.810 3.190 21 H -0.197 1.197 22 H -0.222 1.222 23 H -0.208 1.208 24 C 0.009 3.991 25 C 0.023 3.977 26 H 0.097 0.903 27 O -0.378 6.378 28 C -0.179 4.179 29 C 0.303 3.697 30 O -0.454 6.454 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.042 0.958 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.104 0.896 47 H 0.004 0.996 48 H 0.242 0.758 49 H 0.155 0.845 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.297 -8.334 -5.122 24.348 hybrid contribution 1.687 0.550 0.135 1.779 sum -20.610 -7.784 -4.987 22.588 Atomic orbital electron populations 1.21683 0.93889 1.02582 1.02382 1.21841 0.97187 0.95992 1.02251 1.21627 0.76846 0.98094 1.03638 1.48468 1.07026 1.72161 1.07030 1.22004 0.87810 1.03735 0.86807 1.22184 0.92711 1.03569 0.94253 0.82709 1.20635 0.83259 0.81170 0.83503 1.90707 1.81960 1.40755 1.31999 1.47724 1.05169 1.46054 1.33528 1.22294 1.03549 0.94432 0.88012 1.21677 0.87582 0.91950 0.94403 0.89837 1.21660 0.84354 0.95315 0.98170 1.44508 1.01282 1.13464 1.75297 1.19420 0.82905 0.98827 1.35580 0.89489 1.25649 1.01437 0.96793 1.01850 1.69978 1.27308 1.10912 1.51606 0.85097 0.78687 0.77208 0.77979 1.19732 1.22193 1.20772 1.22313 0.94768 0.86066 0.95971 1.23423 0.92104 0.84037 0.98105 0.90289 1.86420 1.54327 1.24395 1.72667 1.22454 0.94088 1.06047 0.95287 1.21151 0.90003 0.74435 0.84103 1.90707 1.79396 1.52623 1.22635 0.91415 0.92871 0.91791 0.93316 0.90636 0.88289 0.91281 0.87227 0.90804 0.90930 0.90623 0.87083 0.95843 0.92253 0.94173 0.89592 0.99638 0.75848 0.84451 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.13 -1.64 6.26 30.59 0.19 -1.45 16 3 C 0.12 1.73 5.93 86.38 0.51 2.24 16 4 N -0.61 -10.73 2.93 -817.99 -2.40 -13.13 16 5 C 0.12 1.87 6.67 86.83 0.58 2.45 16 6 C -0.11 -1.62 2.57 -10.48 -0.03 -1.64 16 7 H 0.16 1.32 7.56 -2.38 -0.02 1.30 16 8 C 0.53 13.18 6.99 87.66 0.61 13.79 16 9 O -0.57 -19.56 14.94 -3.04 -0.05 -19.60 16 10 N -0.59 -15.30 2.89 -815.94 -2.35 -17.65 16 11 C 0.06 1.02 7.84 127.77 1.00 2.02 16 12 C 0.15 5.28 3.10 46.18 0.14 5.42 16 13 H 0.08 3.49 7.00 -2.38 -0.02 3.47 16 14 C 0.13 5.11 6.80 86.73 0.59 5.70 16 15 N -0.62 -30.34 3.39 -691.98 -2.35 -32.69 16 16 C -0.24 -12.70 10.27 84.03 0.86 -11.84 16 17 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 18 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 19 N -0.95 -54.38 10.09 21.65 0.22 -54.16 16 20 Si 0.98 43.79 29.55 68.60 2.03 45.81 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 22 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 C 0.14 6.46 5.62 86.86 0.49 6.95 16 25 C 0.08 3.11 4.00 31.99 0.13 3.24 16 26 H 0.08 2.64 7.29 -2.39 -0.02 2.62 16 27 O -0.57 -20.13 13.47 -148.98 -2.01 -22.14 16 28 C -0.14 -2.22 5.04 30.59 0.15 -2.06 16 29 C 0.51 11.14 8.02 87.90 0.71 11.84 16 30 O -0.57 -17.04 17.59 -3.04 -0.05 -17.09 16 31 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.21 7.92 -2.39 -0.02 1.19 16 38 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.07 1.50 7.06 -2.39 -0.02 1.49 16 40 H 0.07 1.12 7.84 -2.38 -0.02 1.10 16 41 H 0.08 1.54 6.08 -2.39 -0.01 1.52 16 42 H 0.11 1.05 5.96 -2.39 -0.01 1.04 16 43 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.06 2.05 5.93 -2.39 -0.01 2.03 16 45 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 46 H 0.09 4.56 5.88 -2.39 -0.01 4.55 16 47 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 48 H 0.39 10.59 9.12 -74.05 -0.68 9.92 16 49 H 0.14 1.51 7.10 -2.39 -0.02 1.49 16 50 H 0.10 1.91 7.89 -2.39 -0.02 1.89 16 Total: -1.00 -76.65 392.75 0.44 -76.21 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.28 Total: 21.51 kcal Atomic # 6 Polarization: 25.80 SS G_CDS: 7.12 Total: 32.93 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -6.88 Total: -117.64 kcal Atomic # 8 Polarization: -56.72 SS G_CDS: -2.11 Total: -58.83 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -76.65 0.44 -76.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047548001.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.880 kcal (2) G-P(sol) polarization free energy of solvation -76.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds