Wall clock time and date at job start Sat Apr 11 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47222 * 2 1 4 4 N 1.46500 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.46759 * 124.34914 * 270.18776 * 4 3 2 6 6 C 1.54477 * 105.53450 * 163.21910 * 5 4 3 7 7 H 1.09001 * 111.00120 * 267.07944 * 6 5 4 8 8 C 1.50700 * 110.97077 * 143.32806 * 6 5 4 9 9 O 1.21284 * 119.99789 * 352.18599 * 8 6 5 10 10 N 1.34780 * 120.00021 * 172.17805 * 8 6 5 11 11 C 1.46492 * 119.99881 * 184.91631 * 10 8 6 12 12 C 1.52995 * 109.47390 * 185.91497 * 11 10 8 13 13 H 1.09006 * 109.67814 * 300.73952 * 12 11 10 14 14 C 1.53291 * 109.68844 * 180.21938 * 12 11 10 15 15 O 1.42959 * 109.22545 * 187.97519 * 14 12 11 16 16 C 1.42961 * 114.16760 * 62.58550 * 15 14 12 17 17 C 1.53302 * 109.21841 * 297.41701 * 16 15 14 18 18 N 1.47155 * 109.67998 * 61.25353 * 12 11 10 19 19 C 1.36937 * 120.98305 * 350.24003 * 18 12 11 20 20 H 1.07994 * 119.99977 * 30.79397 * 19 18 12 21 21 C 1.38814 * 120.00111 * 210.80007 * 19 18 12 22 22 N 1.31614 * 119.99907 * 13.94270 * 21 19 18 23 23 Si 1.86796 * 119.99887 * 193.94966 * 21 19 18 24 24 H 1.48500 * 109.47159 * 65.42735 * 23 21 19 25 25 H 1.48505 * 109.46877 * 185.42384 * 23 21 19 26 26 H 1.48499 * 109.47283 * 305.42461 * 23 21 19 27 27 C 1.54633 * 101.76355 * 25.21042 * 6 5 4 28 28 C 1.34421 * 124.34926 * 90.02785 * 4 3 2 29 29 O 1.21278 * 124.94306 * 0.41624 * 28 4 3 30 30 H 1.08998 * 109.47369 * 60.00081 * 1 2 3 31 31 H 1.08995 * 109.47040 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47192 * 299.99993 * 1 2 3 33 33 H 1.08996 * 109.46994 * 239.99696 * 2 1 3 34 34 H 1.08998 * 109.47369 * 119.99919 * 2 1 3 35 35 H 1.08996 * 109.47385 * 59.99935 * 3 2 1 36 36 H 1.09007 * 109.46768 * 300.00058 * 3 2 1 37 37 H 1.09009 * 110.38714 * 44.11040 * 5 4 3 38 38 H 1.08994 * 110.11570 * 282.18826 * 5 4 3 39 39 H 0.96996 * 119.99892 * 4.91982 * 10 8 6 40 40 H 1.09003 * 109.47786 * 305.91653 * 11 10 8 41 41 H 1.09006 * 109.47492 * 65.91739 * 11 10 8 42 42 H 1.09001 * 109.51161 * 307.90139 * 14 12 11 43 43 H 1.09003 * 109.50990 * 68.04760 * 14 12 11 44 44 H 1.08994 * 109.51173 * 57.33709 * 16 15 14 45 45 H 1.08997 * 109.51050 * 177.49764 * 16 15 14 46 46 H 1.08996 * 109.67862 * 172.02580 * 17 16 15 47 47 H 1.09003 * 109.68180 * 292.54069 * 17 16 15 48 48 H 0.97006 * 120.00352 * 180.02562 * 22 21 19 49 49 H 1.08999 * 110.48602 * 216.52420 * 27 6 5 50 50 H 1.09003 * 110.59679 * 93.93539 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3336 1.4382 1.2107 6 6 5.7433 1.0100 0.7462 7 1 5.8747 -0.0680 0.8398 8 6 6.8108 1.7492 1.5110 9 8 6.5049 2.6546 2.2578 10 7 8.1055 1.4040 1.3653 11 6 9.1324 2.0485 2.1876 12 6 10.5172 1.5898 1.7265 13 1 10.5938 0.5062 1.8168 14 6 11.5956 2.2571 2.5876 15 8 12.8827 1.9715 2.0350 16 6 13.0822 2.4894 0.7176 17 6 12.0799 1.8339 -0.2394 18 7 10.7296 1.9866 0.3255 19 6 9.7013 2.4837 -0.4300 20 1 8.9083 3.0459 0.0405 21 6 9.6782 2.2650 -1.8006 22 7 10.4746 1.3647 -2.3368 23 14 8.5171 3.2485 -2.8839 24 1 8.9104 4.6803 -2.8591 25 1 8.5894 2.7395 -4.2771 26 1 7.1284 3.1077 -2.3769 27 6 5.7295 1.4389 -0.7394 28 6 4.2630 1.4431 -1.1107 29 8 3.8337 1.4511 -2.2450 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6766 1.9564 -0.8901 37 1 3.9424 0.7245 1.9359 38 1 4.3669 2.4371 1.6455 39 1 8.3573 0.7290 0.7158 40 1 9.0549 3.1308 2.0837 41 1 8.9875 1.7725 3.2322 42 1 11.4358 3.3353 2.6001 43 1 11.5414 1.8685 3.6046 44 1 12.9278 3.5684 0.7233 45 1 14.0976 2.2678 0.3891 46 1 12.1282 2.3224 -1.2126 47 1 12.3147 0.7750 -0.3482 48 1 10.4587 1.2120 -3.2947 49 1 6.2753 0.7191 -1.3493 50 1 6.1551 2.4357 -0.8547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051138472.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:41 Heat of formation + Delta-G solvation = -90.199150 kcal Electronic energy + Delta-G solvation = -31387.083945 eV Core-core repulsion = 27222.095925 eV Total energy + Delta-G solvation = -4164.988020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.69488 -39.18441 -38.33248 -36.32932 -35.40588 -34.79007 -33.66404 -31.94690 -31.20058 -30.44266 -27.69021 -27.29344 -26.61187 -25.44075 -23.49785 -22.91506 -21.92082 -21.61338 -19.92189 -19.57772 -19.32660 -17.45650 -16.90023 -16.60854 -16.00544 -15.86225 -15.69882 -15.19727 -14.81254 -14.74374 -14.59919 -14.50536 -14.06104 -13.85945 -13.70864 -13.67761 -13.48459 -13.06289 -12.88045 -12.75146 -12.58323 -12.30850 -12.02714 -11.97918 -11.62438 -11.56161 -11.43003 -11.26157 -10.97653 -10.91426 -10.81949 -10.76439 -10.46402 -10.22864 -10.07095 -9.87575 -9.69799 -9.43513 -9.04936 -8.72320 -8.68606 -8.36459 -6.78245 -5.94310 -3.43096 2.66732 2.89300 2.98538 3.28202 3.37460 3.41667 3.59881 4.30693 4.36112 4.47443 4.50982 4.75694 4.78601 4.91455 4.98888 5.06344 5.09507 5.22850 5.24080 5.35036 5.41388 5.49199 5.51882 5.54080 5.66840 5.73874 5.77422 5.79785 5.87536 5.94626 5.97059 6.01354 6.02555 6.07953 6.10785 6.16837 6.27590 6.46398 6.53526 6.68215 6.97405 7.00484 7.10353 7.41867 7.66545 7.81209 8.04327 8.23770 8.24199 8.64274 9.01062 9.62542 10.21486 11.12314 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.003461 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.072384 B = 8089.018090 C = 9429.870752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.126 3.874 4 N -0.622 5.622 5 C 0.118 3.882 6 C -0.121 4.121 7 H 0.112 0.888 8 C 0.522 3.478 9 O -0.557 6.557 10 N -0.687 5.687 11 C 0.135 3.865 12 C 0.125 3.875 13 H 0.041 0.959 14 C 0.056 3.944 15 O -0.392 6.392 16 C 0.035 3.965 17 C 0.144 3.856 18 N -0.590 5.590 19 C -0.258 4.258 20 H 0.072 0.928 21 C 0.014 3.986 22 N -0.897 5.897 23 Si 0.887 3.113 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.270 1.270 27 C -0.146 4.146 28 C 0.522 3.478 29 O -0.532 6.532 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.415 0.585 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.030 0.970 48 H 0.256 0.744 49 H 0.113 0.887 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.900 -3.051 8.556 13.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.004 3.996 4 N -0.357 5.357 5 C -0.005 4.005 6 C -0.143 4.143 7 H 0.130 0.870 8 C 0.307 3.693 9 O -0.437 6.437 10 N -0.337 5.337 11 C 0.010 3.990 12 C 0.018 3.982 13 H 0.058 0.942 14 C -0.023 4.023 15 O -0.311 6.311 16 C -0.043 4.043 17 C 0.019 3.981 18 N -0.315 5.315 19 C -0.387 4.387 20 H 0.090 0.910 21 C -0.186 4.186 22 N -0.540 5.540 23 Si 0.717 3.283 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.196 1.196 27 C -0.186 4.186 28 C 0.310 3.690 29 O -0.408 6.408 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.252 0.748 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.107 0.893 47 H 0.048 0.952 48 H 0.066 0.934 49 H 0.131 0.869 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.243 -2.576 8.399 13.494 hybrid contribution -0.501 0.282 -1.216 1.345 sum -10.744 -2.294 7.183 13.125 Atomic orbital electron populations 1.21689 0.95083 1.01951 1.01937 1.21923 0.96150 0.97259 1.02721 1.21411 0.78038 0.96964 1.03140 1.48339 1.06064 1.73896 1.07384 1.21974 0.88033 1.03720 0.86768 1.22170 0.94346 1.02034 0.95714 0.87022 1.19855 0.83596 0.83693 0.82158 1.90652 1.82303 1.30669 1.40060 1.45849 1.05114 1.42396 1.40302 1.21205 0.86571 0.98606 0.92577 1.21423 0.91856 0.97065 0.87888 0.94165 1.22868 0.84305 0.99063 0.96106 1.87803 1.32742 1.78926 1.31624 1.23342 0.99911 0.97365 0.83652 1.21384 0.82668 0.98123 0.95934 1.44070 1.06062 1.74676 1.06716 1.19131 1.03142 1.27273 0.89159 0.91028 1.25074 0.98551 0.97063 0.97917 1.69981 1.40475 1.32160 1.11405 0.86692 0.81284 0.80143 0.80213 1.21249 1.21555 1.19576 1.22501 0.94717 1.06604 0.94763 1.20912 0.89132 0.74635 0.84301 1.90703 1.78613 1.50353 1.21168 0.92497 0.92452 0.92585 0.91507 0.91697 0.90344 0.90092 0.90182 0.88894 0.74791 0.91044 0.92417 0.93502 0.89941 0.94090 0.90230 0.89299 0.95191 0.93351 0.86887 0.86461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.75 16 2 C -0.14 -1.33 6.26 -26.73 -0.17 -1.50 16 3 C 0.13 1.35 5.94 -4.04 -0.02 1.32 16 4 N -0.62 -8.18 2.93 -172.42 -0.51 -8.69 16 5 C 0.12 1.41 6.77 -3.13 -0.02 1.39 16 6 C -0.12 -1.59 3.55 -90.14 -0.32 -1.91 16 7 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 8 C 0.52 8.36 7.04 -10.98 -0.08 8.28 16 9 O -0.56 -10.31 15.45 5.55 0.09 -10.23 16 10 N -0.69 -11.33 3.62 -60.30 -0.22 -11.55 16 11 C 0.13 2.25 4.48 -4.05 -0.02 2.23 16 12 C 0.12 2.26 3.19 -67.43 -0.21 2.05 16 13 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 14 C 0.06 0.93 6.29 37.31 0.23 1.16 16 15 O -0.39 -7.32 10.74 -35.23 -0.38 -7.70 16 16 C 0.04 0.65 6.99 37.31 0.26 0.91 16 17 C 0.14 3.15 5.39 -3.52 -0.02 3.13 16 18 N -0.59 -12.84 3.03 -164.29 -0.50 -13.33 16 19 C -0.26 -6.03 7.24 -15.06 -0.11 -6.14 16 20 H 0.07 1.70 5.81 -52.49 -0.30 1.40 16 21 C 0.01 0.35 4.98 -17.43 -0.09 0.26 16 22 N -0.90 -23.43 11.30 55.49 0.63 -22.81 16 23 Si 0.89 20.39 29.58 -169.99 -5.03 15.37 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.27 -5.96 5.24 56.52 0.30 -5.67 16 27 C -0.15 -2.31 6.28 -26.74 -0.17 -2.48 16 28 C 0.52 8.64 8.02 -10.86 -0.09 8.55 16 29 O -0.53 -10.67 17.59 5.56 0.10 -10.58 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.95 7.92 -51.93 -0.41 0.54 16 37 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.09 1.24 6.87 -51.93 -0.36 0.88 16 39 H 0.41 7.12 7.67 -40.82 -0.31 6.81 16 40 H 0.07 1.34 7.47 -51.93 -0.39 0.95 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.09 2.15 6.41 -51.93 -0.33 1.82 16 47 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 49 H 0.11 1.80 8.14 -51.93 -0.42 1.37 16 50 H 0.12 2.14 6.18 -51.93 -0.32 1.82 16 LS Contribution 392.95 15.07 5.92 5.92 Total: -1.00 -29.87 392.95 -8.78 -38.65 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -8.43 Total: 8.42 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: -0.45 Total: 16.52 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.59 Total: -56.37 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.19 Total: -28.50 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.87 -8.78 -38.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051138472.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.551 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds