Wall clock time and date at job start Sat Apr 11 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47222 * 2 1 4 4 N 1.46500 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.46759 * 124.34914 * 270.18776 * 4 3 2 6 6 C 1.54477 * 105.53450 * 163.21910 * 5 4 3 7 7 H 1.09001 * 111.00120 * 267.07944 * 6 5 4 8 8 C 1.50700 * 110.97077 * 143.32806 * 6 5 4 9 9 O 1.21284 * 119.99789 * 352.18599 * 8 6 5 10 10 N 1.34780 * 120.00021 * 172.17805 * 8 6 5 11 11 C 1.46492 * 119.99881 * 184.91631 * 10 8 6 12 12 C 1.52995 * 109.47390 * 185.91497 * 11 10 8 13 13 H 1.09006 * 109.67814 * 300.73952 * 12 11 10 14 14 C 1.53291 * 109.68844 * 180.21938 * 12 11 10 15 15 O 1.42959 * 109.22545 * 187.97519 * 14 12 11 16 16 C 1.42961 * 114.16760 * 62.58550 * 15 14 12 17 17 C 1.53302 * 109.21841 * 297.41701 * 16 15 14 18 18 N 1.47155 * 109.67998 * 61.25353 * 12 11 10 19 19 C 1.36937 * 120.98305 * 350.24003 * 18 12 11 20 20 H 1.07994 * 119.99977 * 30.79397 * 19 18 12 21 21 C 1.38814 * 120.00111 * 210.80007 * 19 18 12 22 22 N 1.31614 * 119.99907 * 13.94270 * 21 19 18 23 23 Si 1.86796 * 119.99887 * 193.94966 * 21 19 18 24 24 H 1.48500 * 109.47159 * 65.42735 * 23 21 19 25 25 H 1.48505 * 109.46877 * 185.42384 * 23 21 19 26 26 H 1.48499 * 109.47283 * 305.42461 * 23 21 19 27 27 C 1.54633 * 101.76355 * 25.21042 * 6 5 4 28 28 C 1.34421 * 124.34926 * 90.02785 * 4 3 2 29 29 O 1.21278 * 124.94306 * 0.41624 * 28 4 3 30 30 H 1.08998 * 109.47369 * 60.00081 * 1 2 3 31 31 H 1.08995 * 109.47040 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47192 * 299.99993 * 1 2 3 33 33 H 1.08996 * 109.46994 * 239.99696 * 2 1 3 34 34 H 1.08998 * 109.47369 * 119.99919 * 2 1 3 35 35 H 1.08996 * 109.47385 * 59.99935 * 3 2 1 36 36 H 1.09007 * 109.46768 * 300.00058 * 3 2 1 37 37 H 1.09009 * 110.38714 * 44.11040 * 5 4 3 38 38 H 1.08994 * 110.11570 * 282.18826 * 5 4 3 39 39 H 0.96996 * 119.99892 * 4.91982 * 10 8 6 40 40 H 1.09003 * 109.47786 * 305.91653 * 11 10 8 41 41 H 1.09006 * 109.47492 * 65.91739 * 11 10 8 42 42 H 1.09001 * 109.51161 * 307.90139 * 14 12 11 43 43 H 1.09003 * 109.50990 * 68.04760 * 14 12 11 44 44 H 1.08994 * 109.51173 * 57.33709 * 16 15 14 45 45 H 1.08997 * 109.51050 * 177.49764 * 16 15 14 46 46 H 1.08996 * 109.67862 * 172.02580 * 17 16 15 47 47 H 1.09003 * 109.68180 * 292.54069 * 17 16 15 48 48 H 0.97006 * 120.00352 * 180.02562 * 22 21 19 49 49 H 1.08999 * 110.48602 * 216.52420 * 27 6 5 50 50 H 1.09003 * 110.59679 * 93.93539 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3336 1.4382 1.2107 6 6 5.7433 1.0100 0.7462 7 1 5.8747 -0.0680 0.8398 8 6 6.8108 1.7492 1.5110 9 8 6.5049 2.6546 2.2578 10 7 8.1055 1.4040 1.3653 11 6 9.1324 2.0485 2.1876 12 6 10.5172 1.5898 1.7265 13 1 10.5938 0.5062 1.8168 14 6 11.5956 2.2571 2.5876 15 8 12.8827 1.9715 2.0350 16 6 13.0822 2.4894 0.7176 17 6 12.0799 1.8339 -0.2394 18 7 10.7296 1.9866 0.3255 19 6 9.7013 2.4837 -0.4300 20 1 8.9083 3.0459 0.0405 21 6 9.6782 2.2650 -1.8006 22 7 10.4746 1.3647 -2.3368 23 14 8.5171 3.2485 -2.8839 24 1 8.9104 4.6803 -2.8591 25 1 8.5894 2.7395 -4.2771 26 1 7.1284 3.1077 -2.3769 27 6 5.7295 1.4389 -0.7394 28 6 4.2630 1.4431 -1.1107 29 8 3.8337 1.4511 -2.2450 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6766 1.9564 -0.8901 37 1 3.9424 0.7245 1.9359 38 1 4.3669 2.4371 1.6455 39 1 8.3573 0.7290 0.7158 40 1 9.0549 3.1308 2.0837 41 1 8.9875 1.7725 3.2322 42 1 11.4358 3.3353 2.6001 43 1 11.5414 1.8685 3.6046 44 1 12.9278 3.5684 0.7233 45 1 14.0976 2.2678 0.3891 46 1 12.1282 2.3224 -1.2126 47 1 12.3147 0.7750 -0.3482 48 1 10.4587 1.2120 -3.2947 49 1 6.2753 0.7191 -1.3493 50 1 6.1551 2.4357 -0.8547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051138472.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:40 Heat of formation + Delta-G solvation = -109.846930 kcal Electronic energy + Delta-G solvation = -31387.935937 eV Core-core repulsion = 27222.095925 eV Total energy + Delta-G solvation = -4165.840011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.90836 -40.57187 -39.78095 -37.58918 -36.87384 -35.74302 -35.28080 -33.35660 -32.52333 -31.94410 -29.01317 -28.84260 -27.65623 -26.67309 -25.21118 -24.15814 -23.06290 -22.73971 -21.42380 -20.94439 -20.50539 -18.87132 -18.19009 -18.01023 -17.53627 -17.25179 -16.86233 -16.50998 -16.25098 -16.15010 -16.05352 -15.64369 -15.43460 -15.37422 -14.98708 -14.79296 -14.72596 -14.64706 -14.26710 -14.04923 -13.75565 -13.47031 -13.14069 -13.08577 -12.89752 -12.79100 -12.76340 -12.52688 -12.43442 -12.39978 -12.20157 -12.04577 -11.94529 -11.80402 -11.66795 -11.27896 -11.17171 -10.82487 -10.59512 -10.51253 -9.81189 -9.77194 -8.59852 -7.86260 -5.33955 1.34816 1.41484 1.47431 1.50110 1.64292 1.87982 2.33350 2.45175 3.06063 3.20282 3.31345 3.39591 3.47746 3.78760 3.83899 3.99193 4.02517 4.07819 4.16797 4.28421 4.33252 4.39452 4.48172 4.49667 4.51679 4.59307 4.63755 4.65844 4.68119 4.71219 4.77566 4.81524 4.87004 4.95457 5.03953 5.14152 5.14504 5.18623 5.32586 5.33753 5.55092 5.59697 5.65963 5.72209 5.95111 6.32353 6.38787 6.70577 6.99744 7.12576 7.32408 7.79982 8.35744 9.18225 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.003461 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.072384 B = 8089.018090 C = 9429.870752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.119 3.881 4 N -0.611 5.611 5 C 0.122 3.878 6 C -0.109 4.109 7 H 0.144 0.856 8 C 0.525 3.475 9 O -0.580 6.580 10 N -0.690 5.690 11 C 0.140 3.860 12 C 0.125 3.875 13 H 0.041 0.959 14 C 0.056 3.944 15 O -0.398 6.398 16 C 0.047 3.953 17 C 0.149 3.851 18 N -0.604 5.604 19 C -0.233 4.233 20 H 0.070 0.930 21 C -0.020 4.020 22 N -0.923 5.923 23 Si 0.921 3.079 24 H -0.295 1.295 25 H -0.305 1.305 26 H -0.260 1.260 27 C -0.146 4.146 28 C 0.515 3.485 29 O -0.577 6.577 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.412 0.588 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.047 0.953 43 H 0.120 0.880 44 H 0.042 0.958 45 H 0.102 0.898 46 H 0.060 0.940 47 H 0.009 0.991 48 H 0.247 0.753 49 H 0.107 0.893 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.877 -3.633 11.640 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.001 4.001 4 N -0.343 5.343 5 C -0.001 4.001 6 C -0.131 4.131 7 H 0.162 0.838 8 C 0.311 3.689 9 O -0.461 6.461 10 N -0.339 5.339 11 C 0.016 3.984 12 C 0.019 3.981 13 H 0.059 0.941 14 C -0.023 4.023 15 O -0.316 6.316 16 C -0.031 4.031 17 C 0.023 3.977 18 N -0.329 5.329 19 C -0.363 4.363 20 H 0.088 0.912 21 C -0.217 4.217 22 N -0.569 5.569 23 Si 0.752 3.248 24 H -0.223 1.223 25 H -0.232 1.232 26 H -0.186 1.186 27 C -0.186 4.186 28 C 0.304 3.696 29 O -0.457 6.457 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.083 0.917 37 H 0.137 0.863 38 H 0.102 0.898 39 H 0.248 0.752 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.138 0.862 44 H 0.060 0.940 45 H 0.120 0.880 46 H 0.078 0.922 47 H 0.027 0.973 48 H 0.057 0.943 49 H 0.126 0.874 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.242 -3.151 11.555 16.426 hybrid contribution -0.203 0.496 -2.078 2.146 sum -11.444 -2.655 9.477 15.094 Atomic orbital electron populations 1.21671 0.93526 1.02645 1.02479 1.21858 0.97437 0.95900 1.02185 1.21682 0.76364 0.98256 1.03846 1.48434 1.07177 1.71945 1.06764 1.22091 0.87063 1.04343 0.86567 1.22192 0.94279 1.03532 0.93090 0.83779 1.20191 0.83713 0.83254 0.81774 1.90645 1.82601 1.31627 1.41253 1.45896 1.05492 1.42263 1.40249 1.21166 0.85811 0.97305 0.94108 1.21581 0.93494 0.97197 0.85821 0.94115 1.23024 0.82746 0.99194 0.97304 1.87807 1.33726 1.78977 1.31139 1.23182 0.99967 0.96907 0.83001 1.21210 0.83890 0.96797 0.95803 1.44276 1.05730 1.74776 1.08159 1.19167 1.02677 1.25495 0.88998 0.91216 1.25357 0.99592 0.97966 0.98800 1.70073 1.42151 1.33877 1.10755 0.86146 0.81191 0.78731 0.78758 1.22260 1.23229 1.18581 1.22382 0.94423 1.04991 0.96811 1.21008 0.89647 0.74561 0.84429 1.90671 1.79288 1.52767 1.22996 0.93087 0.91710 0.90938 0.93984 0.90227 0.87362 0.91665 0.86285 0.89835 0.75154 0.93071 0.89465 0.93441 0.86240 0.93968 0.87962 0.92175 0.97332 0.94295 0.87432 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.14 -2.25 6.26 30.59 0.19 -2.06 16 3 C 0.12 2.32 5.94 86.38 0.51 2.83 16 4 N -0.61 -15.05 2.93 -817.99 -2.40 -17.45 16 5 C 0.12 2.56 6.77 86.83 0.59 3.14 16 6 C -0.11 -2.66 3.55 -10.48 -0.04 -2.70 16 7 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 8 C 0.52 15.83 7.04 87.66 0.62 16.44 16 9 O -0.58 -20.37 15.45 -3.04 -0.05 -20.42 16 10 N -0.69 -21.66 3.62 -463.07 -1.68 -23.34 16 11 C 0.14 4.38 4.48 86.38 0.39 4.77 16 12 C 0.13 4.30 3.19 44.96 0.14 4.44 16 13 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 14 C 0.06 1.69 6.29 72.08 0.45 2.14 16 15 O -0.40 -13.83 10.74 -148.98 -1.60 -15.43 16 16 C 0.05 1.68 6.99 72.08 0.50 2.19 16 17 C 0.15 6.52 5.39 86.35 0.47 6.98 16 18 N -0.60 -26.00 3.03 -673.69 -2.04 -28.04 16 19 C -0.23 -10.94 7.24 84.03 0.61 -10.33 16 20 H 0.07 3.31 5.81 -2.91 -0.02 3.29 16 21 C -0.02 -1.01 4.98 84.86 0.42 -0.59 16 22 N -0.92 -49.60 11.30 21.65 0.24 -49.35 16 23 Si 0.92 43.08 29.58 68.60 2.03 45.11 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.31 -15.02 7.11 99.48 0.71 -14.31 16 26 H -0.26 -11.67 5.24 99.48 0.52 -11.15 16 27 C -0.15 -4.60 6.28 30.59 0.19 -4.41 16 28 C 0.52 17.04 8.02 87.90 0.71 17.75 16 29 O -0.58 -23.80 17.59 -3.02 -0.05 -23.85 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.50 7.92 -2.38 -0.02 1.48 16 37 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.08 2.01 6.87 -2.39 -0.02 1.99 16 39 H 0.41 13.65 7.67 -92.71 -0.71 12.94 16 40 H 0.05 1.83 7.47 -2.39 -0.02 1.81 16 41 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 42 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.10 3.16 8.14 -2.39 -0.02 3.15 16 46 H 0.06 2.98 6.41 -2.39 -0.02 2.96 16 47 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.25 13.40 8.31 -92.70 -0.77 12.63 16 49 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 50 H 0.09 3.37 6.18 -2.39 -0.01 3.36 16 Total: -1.00 -66.62 392.95 0.97 -65.66 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.04 Total: 27.65 kcal Atomic # 6 Polarization: 33.00 SS G_CDS: 6.47 Total: 39.47 kcal Atomic # 7 Polarization: -112.31 SS G_CDS: -5.87 Total: -118.18 kcal Atomic # 8 Polarization: -58.00 SS G_CDS: -1.70 Total: -59.70 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -66.62 0.97 -65.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051138472.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.191 kcal (2) G-P(sol) polarization free energy of solvation -66.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds