Wall clock time and date at job start Sat Apr 11 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99485 * 2 1 4 4 H 1.09003 * 110.64325 * 29.29794 * 3 2 1 5 5 C 1.54328 * 110.71808 * 266.15848 * 3 2 1 6 6 N 1.47022 * 107.26739 * 219.26562 * 5 3 2 7 7 C 1.36938 * 125.64896 * 178.90272 * 6 5 3 8 8 H 1.07994 * 120.00714 * 174.87450 * 7 6 5 9 9 C 1.38817 * 119.99760 * 354.88028 * 7 6 5 10 10 N 1.31621 * 120.00093 * 7.06129 * 9 7 6 11 11 Si 1.86802 * 120.00053 * 187.05912 * 9 7 6 12 12 H 1.48501 * 109.46907 * 94.98523 * 11 9 7 13 13 H 1.48496 * 109.47377 * 214.98668 * 11 9 7 14 14 H 1.48501 * 109.47212 * 334.98993 * 11 9 7 15 15 C 1.47425 * 108.70707 * 358.93998 * 6 5 3 16 16 C 1.54916 * 104.82925 * 24.12744 * 15 6 5 17 17 H 1.08996 * 111.00043 * 81.06714 * 16 15 6 18 18 N 1.46494 * 111.00343 * 204.91598 * 16 15 6 19 19 C 1.34781 * 120.00041 * 267.19869 * 18 16 15 20 20 O 1.21279 * 119.99967 * 359.97438 * 19 18 16 21 21 C 1.50700 * 119.99792 * 180.02562 * 19 18 16 22 22 H 1.09005 * 110.85577 * 300.69772 * 21 19 18 23 23 C 1.54622 * 110.97149 * 64.48858 * 21 19 18 24 24 C 1.51382 * 104.14769 * 93.33333 * 23 21 19 25 25 O 1.21288 * 124.93497 * 196.22284 * 24 23 21 26 26 N 1.34423 * 110.12528 * 16.25648 * 24 23 21 27 27 C 1.46497 * 124.34899 * 180.42468 * 26 24 23 28 28 C 1.52994 * 109.47165 * 299.97420 * 27 26 24 29 29 C 1.52999 * 109.47070 * 59.97597 * 27 26 24 30 30 C 1.46766 * 111.29691 * 0.40398 * 26 24 23 31 31 H 1.09007 * 109.46620 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47567 * 299.99709 * 1 2 3 33 33 H 1.09001 * 109.47529 * 60.00335 * 1 2 3 34 34 H 1.08999 * 109.88173 * 338.67969 * 5 3 2 35 35 H 1.08997 * 109.88019 * 99.69717 * 5 3 2 36 36 H 0.96998 * 120.00290 * 180.02562 * 10 9 7 37 37 H 1.08996 * 110.36845 * 142.96529 * 15 6 5 38 38 H 1.09001 * 110.36773 * 265.17995 * 15 6 5 39 39 H 0.97006 * 120.00035 * 87.19531 * 18 16 15 40 40 H 1.09004 * 110.48734 * 211.99948 * 23 21 19 41 41 H 1.08996 * 110.48932 * 334.64185 * 23 21 19 42 42 H 1.08993 * 109.46982 * 179.97438 * 27 26 24 43 43 H 1.09004 * 109.47305 * 60.00594 * 28 27 26 44 44 H 1.09003 * 109.47483 * 179.97438 * 28 27 26 45 45 H 1.08993 * 109.47543 * 300.00146 * 28 27 26 46 46 H 1.09006 * 109.47117 * 179.97438 * 29 27 26 47 47 H 1.09002 * 109.47490 * 299.99944 * 29 27 26 48 48 H 1.09001 * 109.47351 * 59.99870 * 29 27 26 49 49 H 1.09001 * 110.23859 * 223.98264 * 30 26 24 50 50 H 1.09003 * 110.31655 * 102.02520 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3537 2.0184 0.4992 5 6 2.3205 1.7650 -1.4402 6 7 3.6081 2.4737 -1.4043 7 6 4.2487 3.0202 -2.4842 8 1 5.1527 3.5939 -2.3425 9 6 3.7361 2.8370 -3.7611 10 7 2.5646 2.2593 -3.9234 11 14 4.7088 3.4102 -5.2493 12 1 5.5021 2.2767 -5.7887 13 1 3.7735 3.9008 -6.2931 14 1 5.6243 4.5089 -4.8491 15 6 4.0959 2.4978 -0.0133 16 6 3.4102 1.2875 0.6684 17 1 3.9387 0.3612 0.4431 18 7 3.3040 1.4905 2.1153 19 6 4.2695 1.0269 2.9335 20 8 5.2260 0.4413 2.4719 21 6 4.1600 1.2352 4.4220 22 1 4.1082 2.2972 4.6624 23 6 2.9418 0.4773 4.9987 24 6 3.5102 -0.8540 5.4416 25 8 2.8521 -1.8419 5.6905 26 7 4.8502 -0.7818 5.5198 27 6 5.7167 -1.8966 5.9104 28 6 5.3508 -2.3561 7.3231 29 6 5.5271 -3.0571 4.9315 30 6 5.3337 0.5572 5.1630 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 2.3922 0.8990 -2.0983 35 1 1.5360 2.4345 -1.7929 36 1 2.2065 2.1310 -4.8156 37 1 5.1796 2.3829 0.0108 38 1 3.8027 3.4269 0.4755 39 1 2.5388 1.9586 2.4845 40 1 2.5249 1.0164 5.8494 41 1 2.1837 0.3321 4.2292 42 1 6.7570 -1.5720 5.8919 43 1 4.3105 -2.6809 7.3416 44 1 5.9952 -3.1859 7.6137 45 1 5.4858 -1.5294 8.0205 46 1 6.1722 -3.8865 5.2219 47 1 4.4868 -3.3818 4.9499 48 1 5.7878 -2.7298 3.9250 49 1 6.2011 0.4826 4.5072 50 1 5.5879 1.1197 6.0614 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081756383.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:03 Heat of formation + Delta-G solvation = -81.327721 kcal Electronic energy + Delta-G solvation = -31053.608459 eV Core-core repulsion = 26889.005133 eV Total energy + Delta-G solvation = -4164.603326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.13250 -39.46838 -38.16850 -36.45228 -35.91910 -35.09004 -34.13712 -31.87077 -30.46187 -28.77547 -27.93134 -27.34377 -27.17095 -26.13484 -24.56048 -23.24748 -22.63387 -20.60495 -20.50546 -19.93944 -19.06821 -17.87881 -17.05407 -16.85490 -16.52663 -15.75753 -15.62502 -15.50727 -14.83982 -14.73953 -14.45112 -14.34219 -14.22931 -13.88195 -13.82474 -13.77012 -13.29395 -13.03074 -13.00025 -12.66705 -12.31511 -12.30441 -12.08834 -11.92881 -11.90920 -11.80677 -11.57043 -11.44631 -11.28926 -11.24660 -11.04337 -10.84046 -10.77033 -10.17764 -10.02226 -9.85283 -9.78617 -9.75004 -9.17307 -8.88226 -8.79289 -8.59628 -6.91987 -5.77525 -3.11488 2.44148 2.61116 2.78476 3.12666 3.39278 3.44652 3.46142 4.01278 4.08134 4.11829 4.43292 4.50586 4.62147 4.75040 4.85402 4.98058 5.02417 5.12699 5.17654 5.29668 5.36004 5.40957 5.44856 5.45205 5.49247 5.56839 5.57144 5.60877 5.62344 5.68718 5.74480 5.82743 5.92553 5.97353 6.01306 6.12112 6.15254 6.45079 6.47434 6.56891 6.79513 6.98167 7.22209 7.44827 7.57046 7.69610 7.84032 8.04205 8.16810 8.27641 9.14043 9.74594 10.37745 11.34251 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017683 B = 0.002735 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.088536 B =10234.472925 C =10910.291353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.055 3.945 4 H 0.062 0.938 5 C 0.163 3.837 6 N -0.600 5.600 7 C -0.231 4.231 8 H 0.081 0.919 9 C -0.005 4.005 10 N -0.919 5.919 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.132 3.868 16 C 0.133 3.867 17 H 0.107 0.893 18 N -0.712 5.712 19 C 0.520 3.480 20 O -0.528 6.528 21 C -0.126 4.126 22 H 0.126 0.874 23 C -0.148 4.148 24 C 0.520 3.480 25 O -0.529 6.529 26 N -0.610 5.610 27 C 0.155 3.845 28 C -0.166 4.166 29 C -0.169 4.169 30 C 0.116 3.884 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.254 0.746 37 H 0.050 0.950 38 H 0.023 0.977 39 H 0.397 0.603 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.062 0.938 49 H 0.099 0.901 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 -2.359 22.281 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.004 4.004 4 H 0.080 0.920 5 C 0.038 3.962 6 N -0.328 5.328 7 C -0.359 4.359 8 H 0.099 0.901 9 C -0.202 4.202 10 N -0.566 5.566 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.028 3.972 17 H 0.125 0.875 18 N -0.362 5.362 19 C 0.305 3.695 20 O -0.404 6.404 21 C -0.148 4.148 22 H 0.144 0.856 23 C -0.188 4.188 24 C 0.308 3.692 25 O -0.405 6.405 26 N -0.345 5.345 27 C 0.053 3.947 28 C -0.224 4.224 29 C -0.227 4.227 30 C -0.008 4.008 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.040 0.960 39 H 0.231 0.769 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.117 0.883 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.099 -3.534 21.846 22.157 hybrid contribution -0.183 0.901 -0.744 1.183 sum 0.917 -2.632 21.102 21.286 Atomic orbital electron populations 1.22708 0.81649 1.02123 0.99754 1.87918 1.19160 1.27471 1.95046 1.23832 0.92773 0.84150 0.99603 0.91989 1.21585 0.88367 0.97148 0.89130 1.44248 1.20754 1.66061 1.01716 1.19061 1.06139 1.26675 0.84026 0.90118 1.24847 0.97185 1.00668 0.97462 1.69948 1.17079 1.48371 1.21240 0.86090 0.79001 0.78060 0.82562 1.21476 1.21746 1.20559 1.21815 0.97616 0.93609 0.86532 1.22413 0.96411 1.01194 0.77216 0.87534 1.45891 1.24359 1.58495 1.07464 1.20117 0.82837 0.78683 0.87900 1.90729 1.31657 1.40973 1.77038 1.22338 0.96607 1.02748 0.93093 0.85646 1.22410 0.97895 0.95025 1.03483 1.20717 0.82343 0.89631 0.76554 1.90699 1.63630 1.35596 1.50625 1.48356 1.06769 1.11800 1.67540 1.20917 0.93542 0.85950 0.94318 1.22182 1.03547 1.01318 0.95372 1.22183 1.03524 0.97485 0.99521 1.22017 0.97473 0.82231 0.99037 0.90220 0.94819 0.93594 0.91845 0.93538 0.93606 0.93181 0.95971 0.76942 0.86780 0.87519 0.89404 0.91026 0.91507 0.92631 0.91627 0.91152 0.91890 0.88327 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.86 101.05 1.10 1.59 16 2 O -0.38 -6.98 10.44 -35.23 -0.37 -7.35 16 3 C 0.06 1.03 3.06 -24.90 -0.08 0.95 16 4 H 0.06 0.99 7.71 -51.93 -0.40 0.59 16 5 C 0.16 3.91 5.16 -3.06 -0.02 3.89 16 6 N -0.60 -15.17 3.39 -170.07 -0.58 -15.74 16 7 C -0.23 -6.39 10.27 -15.06 -0.15 -6.55 16 8 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 9 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 10 N -0.92 -26.74 10.36 55.49 0.57 -26.17 16 11 Si 0.91 22.00 29.56 -169.99 -5.02 16.98 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.13 2.71 6.93 -2.53 -0.02 2.69 16 16 C 0.13 2.40 3.15 -65.78 -0.21 2.19 16 17 H 0.11 2.27 7.54 -51.93 -0.39 1.88 16 18 N -0.71 -9.47 5.01 -51.73 -0.26 -9.73 16 19 C 0.52 6.89 7.12 -10.98 -0.08 6.81 16 20 O -0.53 -9.25 15.16 5.56 0.08 -9.17 16 21 C -0.13 -1.05 3.54 -90.14 -0.32 -1.37 16 22 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 23 C -0.15 -1.27 6.40 -26.70 -0.17 -1.44 16 24 C 0.52 6.37 7.41 -10.81 -0.08 6.29 16 25 O -0.53 -8.30 15.12 5.55 0.08 -8.21 16 26 N -0.61 -6.45 2.83 -164.81 -0.47 -6.91 16 27 C 0.15 1.50 3.47 -67.94 -0.24 1.27 16 28 C -0.17 -1.44 9.20 37.15 0.34 -1.10 16 29 C -0.17 -1.89 9.20 37.16 0.34 -1.54 16 30 C 0.12 0.98 6.66 -3.12 -0.02 0.96 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.75 7.21 -51.93 -0.37 1.37 16 35 H 0.05 1.20 7.61 -51.93 -0.40 0.81 16 36 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.40 3.98 8.57 -40.82 -0.35 3.63 16 40 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.11 0.98 7.75 -51.93 -0.40 0.58 16 42 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 43 H 0.07 0.79 6.77 -51.93 -0.35 0.44 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.94 6.80 -51.93 -0.35 0.59 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.10 0.99 6.98 -51.93 -0.36 0.63 16 50 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 399.92 15.07 6.03 6.03 Total: -1.00 -35.36 399.92 -8.03 -43.39 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -8.42 Total: 2.48 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 0.31 Total: 14.41 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.73 Total: -58.55 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.20 Total: -24.73 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.36 -8.03 -43.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081756383.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.935 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds