Wall clock time and date at job start Sat Apr 11 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99485 * 2 1 4 4 H 1.09003 * 110.64325 * 29.29794 * 3 2 1 5 5 C 1.54328 * 110.71808 * 266.15848 * 3 2 1 6 6 N 1.47022 * 107.26739 * 219.26562 * 5 3 2 7 7 C 1.36938 * 125.64896 * 178.90272 * 6 5 3 8 8 H 1.07994 * 120.00714 * 174.87450 * 7 6 5 9 9 C 1.38817 * 119.99760 * 354.88028 * 7 6 5 10 10 N 1.31621 * 120.00093 * 7.06129 * 9 7 6 11 11 Si 1.86802 * 120.00053 * 187.05912 * 9 7 6 12 12 H 1.48501 * 109.46907 * 94.98523 * 11 9 7 13 13 H 1.48496 * 109.47377 * 214.98668 * 11 9 7 14 14 H 1.48501 * 109.47212 * 334.98993 * 11 9 7 15 15 C 1.47425 * 108.70707 * 358.93998 * 6 5 3 16 16 C 1.54916 * 104.82925 * 24.12744 * 15 6 5 17 17 H 1.08996 * 111.00043 * 81.06714 * 16 15 6 18 18 N 1.46494 * 111.00343 * 204.91598 * 16 15 6 19 19 C 1.34781 * 120.00041 * 267.19869 * 18 16 15 20 20 O 1.21279 * 119.99967 * 359.97438 * 19 18 16 21 21 C 1.50700 * 119.99792 * 180.02562 * 19 18 16 22 22 H 1.09005 * 110.85577 * 300.69772 * 21 19 18 23 23 C 1.54622 * 110.97149 * 64.48858 * 21 19 18 24 24 C 1.51382 * 104.14769 * 93.33333 * 23 21 19 25 25 O 1.21288 * 124.93497 * 196.22284 * 24 23 21 26 26 N 1.34423 * 110.12528 * 16.25648 * 24 23 21 27 27 C 1.46497 * 124.34899 * 180.42468 * 26 24 23 28 28 C 1.52994 * 109.47165 * 299.97420 * 27 26 24 29 29 C 1.52999 * 109.47070 * 59.97597 * 27 26 24 30 30 C 1.46766 * 111.29691 * 0.40398 * 26 24 23 31 31 H 1.09007 * 109.46620 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47567 * 299.99709 * 1 2 3 33 33 H 1.09001 * 109.47529 * 60.00335 * 1 2 3 34 34 H 1.08999 * 109.88173 * 338.67969 * 5 3 2 35 35 H 1.08997 * 109.88019 * 99.69717 * 5 3 2 36 36 H 0.96998 * 120.00290 * 180.02562 * 10 9 7 37 37 H 1.08996 * 110.36845 * 142.96529 * 15 6 5 38 38 H 1.09001 * 110.36773 * 265.17995 * 15 6 5 39 39 H 0.97006 * 120.00035 * 87.19531 * 18 16 15 40 40 H 1.09004 * 110.48734 * 211.99948 * 23 21 19 41 41 H 1.08996 * 110.48932 * 334.64185 * 23 21 19 42 42 H 1.08993 * 109.46982 * 179.97438 * 27 26 24 43 43 H 1.09004 * 109.47305 * 60.00594 * 28 27 26 44 44 H 1.09003 * 109.47483 * 179.97438 * 28 27 26 45 45 H 1.08993 * 109.47543 * 300.00146 * 28 27 26 46 46 H 1.09006 * 109.47117 * 179.97438 * 29 27 26 47 47 H 1.09002 * 109.47490 * 299.99944 * 29 27 26 48 48 H 1.09001 * 109.47351 * 59.99870 * 29 27 26 49 49 H 1.09001 * 110.23859 * 223.98264 * 30 26 24 50 50 H 1.09003 * 110.31655 * 102.02520 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3537 2.0184 0.4992 5 6 2.3205 1.7650 -1.4402 6 7 3.6081 2.4737 -1.4043 7 6 4.2487 3.0202 -2.4842 8 1 5.1527 3.5939 -2.3425 9 6 3.7361 2.8370 -3.7611 10 7 2.5646 2.2593 -3.9234 11 14 4.7088 3.4102 -5.2493 12 1 5.5021 2.2767 -5.7887 13 1 3.7735 3.9008 -6.2931 14 1 5.6243 4.5089 -4.8491 15 6 4.0959 2.4978 -0.0133 16 6 3.4102 1.2875 0.6684 17 1 3.9387 0.3612 0.4431 18 7 3.3040 1.4905 2.1153 19 6 4.2695 1.0269 2.9335 20 8 5.2260 0.4413 2.4719 21 6 4.1600 1.2352 4.4220 22 1 4.1082 2.2972 4.6624 23 6 2.9418 0.4773 4.9987 24 6 3.5102 -0.8540 5.4416 25 8 2.8521 -1.8419 5.6905 26 7 4.8502 -0.7818 5.5198 27 6 5.7167 -1.8966 5.9104 28 6 5.3508 -2.3561 7.3231 29 6 5.5271 -3.0571 4.9315 30 6 5.3337 0.5572 5.1630 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 2.3922 0.8990 -2.0983 35 1 1.5360 2.4345 -1.7929 36 1 2.2065 2.1310 -4.8156 37 1 5.1796 2.3829 0.0108 38 1 3.8027 3.4269 0.4755 39 1 2.5388 1.9586 2.4845 40 1 2.5249 1.0164 5.8494 41 1 2.1837 0.3321 4.2292 42 1 6.7570 -1.5720 5.8919 43 1 4.3105 -2.6809 7.3416 44 1 5.9952 -3.1859 7.6137 45 1 5.4858 -1.5294 8.0205 46 1 6.1722 -3.8865 5.2219 47 1 4.4868 -3.3818 4.9499 48 1 5.7878 -2.7298 3.9250 49 1 6.2011 0.4826 4.5072 50 1 5.5879 1.1197 6.0614 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081756383.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:02 Heat of formation + Delta-G solvation = -108.050475 kcal Electronic energy + Delta-G solvation = -31054.767245 eV Core-core repulsion = 26889.005133 eV Total energy + Delta-G solvation = -4165.762111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.01096 -40.69898 -39.54877 -37.56268 -37.31032 -35.90289 -35.61787 -33.69313 -31.42775 -30.41548 -28.89220 -28.57734 -28.14602 -27.55193 -26.20844 -24.36785 -23.40935 -22.25305 -21.98261 -21.15462 -19.91410 -19.20918 -18.53011 -17.90599 -17.70448 -17.24682 -16.67924 -16.65061 -16.29506 -15.84888 -15.80596 -15.71698 -15.17766 -15.14083 -15.00222 -14.72508 -14.57785 -14.43359 -14.11434 -13.74385 -13.63133 -13.55372 -13.17152 -13.16203 -12.99045 -12.84441 -12.79055 -12.62342 -12.60883 -12.51659 -12.32634 -12.23180 -12.08974 -12.06241 -11.88261 -11.62254 -10.95019 -10.76493 -10.65150 -10.57060 -10.08689 -9.67431 -8.96819 -7.89711 -5.26170 1.44599 1.47891 1.55842 1.56830 1.60128 1.98300 2.10782 2.45894 2.76443 3.29364 3.30497 3.36912 3.53325 3.61336 3.85942 3.88726 3.92609 3.99669 4.09466 4.12150 4.27573 4.36984 4.42051 4.45068 4.58112 4.61408 4.62776 4.65836 4.70909 4.73561 4.83578 4.85153 4.85553 4.86967 4.90317 4.92564 5.01609 5.19152 5.28987 5.31451 5.38363 5.48264 5.65094 5.69718 6.12852 6.20546 6.30690 6.54191 7.03502 7.19294 7.25573 7.69537 8.32121 9.20398 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017683 B = 0.002735 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.088536 B =10234.472925 C =10910.291353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.075 3.925 4 H 0.100 0.900 5 C 0.173 3.827 6 N -0.623 5.623 7 C -0.245 4.245 8 H 0.086 0.914 9 C -0.063 4.063 10 N -0.948 5.948 11 Si 0.978 3.022 12 H -0.291 1.291 13 H -0.292 1.292 14 H -0.264 1.264 15 C 0.133 3.867 16 C 0.152 3.848 17 H 0.068 0.932 18 N -0.699 5.699 19 C 0.514 3.486 20 O -0.577 6.577 21 C -0.109 4.109 22 H 0.178 0.822 23 C -0.138 4.138 24 C 0.501 3.499 25 O -0.576 6.576 26 N -0.613 5.613 27 C 0.147 3.853 28 C -0.156 4.156 29 C -0.164 4.164 30 C 0.112 3.888 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.014 0.986 35 H 0.021 0.979 36 H 0.248 0.752 37 H 0.036 0.964 38 H 0.050 0.950 39 H 0.418 0.582 40 H 0.156 0.844 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.043 0.957 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.041 0.959 48 H 0.038 0.962 49 H 0.081 0.919 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 -0.287 25.272 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C 0.016 3.984 4 H 0.118 0.882 5 C 0.047 3.953 6 N -0.350 5.350 7 C -0.374 4.374 8 H 0.103 0.897 9 C -0.256 4.256 10 N -0.596 5.596 11 Si 0.806 3.194 12 H -0.218 1.218 13 H -0.218 1.218 14 H -0.188 1.188 15 C 0.007 3.993 16 C 0.045 3.955 17 H 0.086 0.914 18 N -0.351 5.351 19 C 0.301 3.699 20 O -0.456 6.456 21 C -0.130 4.130 22 H 0.195 0.805 23 C -0.178 4.178 24 C 0.290 3.710 25 O -0.457 6.457 26 N -0.346 5.346 27 C 0.045 3.955 28 C -0.214 4.214 29 C -0.222 4.222 30 C -0.011 4.011 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.033 0.967 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.256 0.744 40 H 0.174 0.826 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.062 0.938 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.099 0.901 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.344 -1.421 24.894 24.970 hybrid contribution -0.218 0.188 -1.666 1.690 sum 1.126 -1.233 23.228 23.288 Atomic orbital electron populations 1.22970 0.79358 1.03703 1.00873 1.87901 1.21759 1.27346 1.94955 1.23532 0.93722 0.85089 0.96088 0.88234 1.21301 0.87363 0.94570 0.92089 1.44523 1.21441 1.65861 1.03208 1.19452 1.06292 1.26473 0.85185 0.89655 1.25695 0.98197 1.01470 1.00233 1.70167 1.18482 1.49765 1.21227 0.85066 0.77661 0.77754 0.78906 1.21839 1.21831 1.18839 1.21939 0.97016 0.95649 0.84699 1.21765 0.95279 0.98298 0.80202 0.91411 1.45644 1.25491 1.58795 1.05128 1.21119 0.81579 0.77125 0.90050 1.90725 1.33636 1.42844 1.78347 1.22425 0.96461 1.05699 0.88441 0.80463 1.22467 0.97489 0.93101 1.04730 1.21477 0.82867 0.90510 0.76107 1.90673 1.64687 1.37520 1.52778 1.48569 1.06610 1.12811 1.66629 1.21083 0.94711 0.85425 0.94318 1.22083 1.02033 1.02378 0.94897 1.22131 1.02034 0.99146 0.98908 1.22265 0.96726 0.81547 1.00534 0.88592 0.91435 0.94593 0.96733 0.96123 0.94254 0.94517 0.93275 0.74388 0.82642 0.87992 0.87201 0.93811 0.89905 0.91169 0.89536 0.93986 0.94261 0.90087 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.86 113.37 1.23 1.96 16 2 O -0.40 -14.77 10.44 -148.98 -1.56 -16.32 16 3 C 0.07 2.73 3.06 31.78 0.10 2.83 16 4 H 0.10 2.90 7.71 -2.39 -0.02 2.88 16 5 C 0.17 8.58 5.16 86.73 0.45 9.02 16 6 N -0.62 -32.22 3.39 -691.97 -2.35 -34.56 16 7 C -0.25 -13.85 10.27 84.03 0.86 -12.99 16 8 H 0.09 4.60 7.84 -2.91 -0.02 4.57 16 9 C -0.06 -3.59 5.48 84.86 0.46 -3.12 16 10 N -0.95 -57.35 10.36 21.65 0.22 -57.13 16 11 Si 0.98 46.06 29.56 68.60 2.03 48.09 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 14 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 15 C 0.13 5.44 6.93 86.86 0.60 6.05 16 16 C 0.15 5.44 3.15 46.38 0.15 5.59 16 17 H 0.07 3.00 7.54 -2.39 -0.02 2.99 16 18 N -0.70 -16.92 5.01 -435.97 -2.18 -19.10 16 19 C 0.51 12.56 7.12 87.66 0.62 13.18 16 20 O -0.58 -20.18 15.16 -3.03 -0.05 -20.23 16 21 C -0.11 -1.36 3.54 -10.49 -0.04 -1.40 16 22 H 0.18 0.50 8.14 -2.38 -0.02 0.48 16 23 C -0.14 -1.83 6.40 30.62 0.20 -1.64 16 24 C 0.50 11.57 7.41 87.93 0.65 12.22 16 25 O -0.58 -18.26 15.12 -3.06 -0.05 -18.30 16 26 N -0.61 -11.85 2.83 -793.91 -2.25 -14.10 16 27 C 0.15 2.68 3.47 44.99 0.16 2.84 16 28 C -0.16 -2.48 9.20 71.98 0.66 -1.82 16 29 C -0.16 -3.77 9.20 71.98 0.66 -3.11 16 30 C 0.11 1.51 6.66 86.83 0.58 2.08 16 31 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.07 1.39 8.11 -2.39 -0.02 1.37 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.01 0.85 7.21 -2.39 -0.02 0.83 16 35 H 0.02 1.11 7.61 -2.39 -0.02 1.09 16 36 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.42 6.62 8.57 -92.70 -0.79 5.83 16 40 H 0.16 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.10 1.53 7.75 -2.39 -0.02 1.51 16 42 H 0.11 1.52 8.07 -2.39 -0.02 1.50 16 43 H 0.04 0.96 6.77 -2.38 -0.02 0.94 16 44 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 47 H 0.04 1.19 6.80 -2.39 -0.02 1.18 16 48 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.08 1.46 6.98 -2.39 -0.02 1.44 16 50 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -85.26 399.92 1.31 -83.95 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.14 Total: 16.01 kcal Atomic # 6 Polarization: 24.36 SS G_CDS: 7.34 Total: 31.70 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -6.56 Total: -124.89 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -1.65 Total: -54.85 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -85.26 1.31 -83.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081756383.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.104 kcal (2) G-P(sol) polarization free energy of solvation -85.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds