Wall clock time and date at job start Sat Apr 11 2020 05:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47376 * 2 1 4 4 N 1.46506 * 109.47184 * 119.99980 * 2 1 3 5 5 C 1.46501 * 120.00200 * 300.00224 * 4 2 1 6 6 C 1.34779 * 120.00096 * 120.00052 * 4 2 1 7 7 O 1.21286 * 119.99623 * 4.87126 * 6 4 2 8 8 C 1.50698 * 119.99952 * 184.88043 * 6 4 2 9 9 C 1.50693 * 115.55199 * 68.02255 * 8 6 4 10 10 O 1.21276 * 119.99997 * 219.73883 * 9 8 6 11 11 N 1.34779 * 120.00018 * 39.74002 * 9 8 6 12 12 C 1.46504 * 119.99897 * 185.01274 * 11 9 8 13 13 H 1.09006 * 110.88384 * 37.42871 * 12 11 9 14 14 C 1.54905 * 111.00837 * 273.54814 * 12 11 9 15 15 N 1.47421 * 104.83536 * 204.87991 * 14 12 11 16 16 C 1.36933 * 125.64748 * 204.09241 * 15 14 12 17 17 H 1.07990 * 120.00234 * 356.03267 * 16 15 14 18 18 C 1.38818 * 119.99607 * 176.03655 * 16 15 14 19 19 N 1.31625 * 119.99876 * 210.89352 * 18 16 15 20 20 Si 1.86800 * 120.00148 * 30.89398 * 18 16 15 21 21 H 1.48501 * 109.46942 * 54.19164 * 20 18 16 22 22 H 1.48497 * 109.47273 * 294.19111 * 20 18 16 23 23 H 1.48503 * 109.47114 * 174.18987 * 20 18 16 24 24 C 1.47028 * 108.70170 * 24.35406 * 15 14 12 25 25 C 1.54336 * 107.26356 * 358.58625 * 24 15 14 26 26 H 1.08996 * 110.51411 * 96.45382 * 25 24 15 27 27 O 1.42898 * 110.99982 * 219.60173 * 25 24 15 28 28 C 1.53005 * 117.51503 * 213.72344 * 8 6 4 29 29 C 1.52998 * 117.49520 * 282.35198 * 8 6 4 30 30 H 1.09000 * 109.47245 * 59.99746 * 1 2 3 31 31 H 1.08997 * 109.47027 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46965 * 299.99847 * 1 2 3 33 33 H 1.08997 * 109.47513 * 239.99639 * 2 1 3 34 34 H 1.08999 * 109.47312 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47140 * 300.00318 * 3 2 1 36 36 H 1.09000 * 109.46948 * 60.00143 * 3 2 1 37 37 H 1.08998 * 109.46946 * 274.51730 * 5 4 2 38 38 H 1.09000 * 109.46921 * 34.51356 * 5 4 2 39 39 H 1.08992 * 109.47241 * 154.51715 * 5 4 2 40 40 H 0.97000 * 120.00277 * 5.01949 * 11 9 8 41 41 H 1.09002 * 110.36890 * 86.03717 * 14 12 11 42 42 H 1.09005 * 110.45757 * 323.76742 * 14 12 11 43 43 H 0.96996 * 119.99770 * 5.02769 * 19 18 16 44 44 H 1.08994 * 109.88301 * 118.13048 * 24 15 14 45 45 H 1.08996 * 109.88206 * 239.30042 * 24 15 14 46 46 H 0.96699 * 114.00550 * 293.78020 * 27 25 24 47 47 H 1.08990 * 117.49913 * 214.96804 * 28 8 6 48 48 H 1.08998 * 117.49505 * 359.97438 * 28 8 6 49 49 H 1.08996 * 117.50219 * 359.97438 * 29 8 6 50 50 H 1.08999 * 117.49993 * 145.00480 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6644 -0.1902 2.5268 6 6 2.7932 -1.7864 1.0726 7 8 3.1592 -2.1496 -0.0253 8 6 3.2046 -2.5606 2.2983 9 6 2.0932 -3.2849 3.0130 10 8 2.0655 -3.3078 4.2253 11 7 1.1299 -3.9074 2.3051 12 6 -0.0089 -4.5172 2.9962 13 1 -0.3184 -3.9092 3.8463 14 6 0.3206 -5.9645 3.4393 15 7 -0.9878 -6.6370 3.5353 16 6 -1.2664 -7.7343 4.3055 17 1 -0.4773 -8.2181 4.8617 18 6 -2.5634 -8.2247 4.3714 19 7 -2.9892 -8.8142 5.4685 20 14 -3.7045 -8.0481 2.9029 21 1 -3.0537 -8.6234 1.6984 22 1 -3.9932 -6.6101 2.6704 23 1 -4.9736 -8.7705 3.1725 24 6 -1.9422 -5.9381 2.6621 25 6 -1.1920 -4.7519 2.0202 26 1 -0.8268 -5.0220 1.0294 27 8 -2.0275 -3.5947 1.9509 28 6 4.5853 -3.2199 2.2875 29 6 4.3350 -1.9827 3.1523 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.3707 0.5855 2.8229 38 1 0.6572 0.2257 2.5025 39 1 1.7021 -1.0092 3.2449 40 1 1.1907 -3.9517 1.3380 41 1 0.8172 -5.9604 4.4096 42 1 0.9469 -6.4574 2.6956 43 1 -2.4228 -8.8414 6.2555 44 1 -2.3004 -6.6157 1.8872 45 1 -2.7814 -5.5684 3.2512 46 1 -2.7822 -3.6896 1.3539 47 1 4.6896 -4.1776 2.7974 48 1 5.1960 -3.0942 1.3935 49 1 4.7814 -1.0430 2.8273 50 1 4.2748 -2.1266 4.2310 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197310755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:17 Heat of formation + Delta-G solvation = -47.513682 kcal Electronic energy + Delta-G solvation = -31723.528205 eV Core-core repulsion = 27560.391166 eV Total energy + Delta-G solvation = -4163.137039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.15625 -39.54348 -38.37125 -36.98500 -36.01325 -35.37369 -34.26775 -32.55903 -32.03196 -28.95130 -27.90353 -27.55093 -27.23829 -25.71893 -23.96161 -22.81481 -22.42108 -21.17245 -20.49503 -20.26108 -19.22265 -18.26195 -17.57134 -17.17529 -16.87413 -16.46006 -15.94369 -15.53059 -15.09715 -14.95520 -14.73281 -14.41427 -14.23341 -14.03298 -13.68187 -13.35713 -13.32324 -13.26844 -12.94888 -12.80301 -12.69622 -12.59977 -12.39331 -12.32081 -11.99972 -11.88594 -11.74908 -11.61806 -11.38253 -11.22324 -11.15901 -10.83221 -10.54440 -10.41034 -10.25391 -10.00601 -9.76459 -9.60646 -9.15749 -9.02427 -8.98811 -8.44332 -7.18022 -6.40570 -3.20206 2.15024 2.34056 2.54566 2.93470 3.34798 3.47425 3.55645 3.66813 4.05652 4.20956 4.41826 4.48983 4.54096 4.57388 4.60393 4.72631 4.78627 4.83091 4.94427 5.08431 5.19722 5.20429 5.23789 5.25036 5.27975 5.29818 5.37758 5.42936 5.44727 5.52640 5.55377 5.59646 5.76843 5.78638 5.81300 5.82994 5.93934 6.20667 6.22521 6.30878 6.47898 6.57450 6.65914 6.98805 7.42689 7.60428 7.72471 7.79835 8.11874 8.28652 8.97438 9.52195 10.16396 11.07766 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.003403 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.714207 B = 8224.880299 C = 9295.188186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.130 3.870 3 C -0.159 4.159 4 N -0.600 5.600 5 C 0.073 3.927 6 C 0.557 3.443 7 O -0.531 6.531 8 C -0.200 4.200 9 C 0.560 3.440 10 O -0.524 6.524 11 N -0.708 5.708 12 C 0.143 3.857 13 H 0.107 0.893 14 C 0.132 3.868 15 N -0.603 5.603 16 C -0.338 4.338 17 H 0.083 0.917 18 C -0.012 4.012 19 N -0.906 5.906 20 Si 1.040 2.960 21 H -0.297 1.297 22 H -0.280 1.280 23 H -0.297 1.297 24 C 0.092 3.908 25 C 0.086 3.914 26 H 0.066 0.934 27 O -0.557 6.557 28 C -0.121 4.121 29 C -0.128 4.128 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.400 0.600 41 H 0.059 0.941 42 H 0.026 0.974 43 H 0.266 0.734 44 H 0.031 0.969 45 H 0.061 0.939 46 H 0.378 0.622 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.105 0.895 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.182 21.367 -11.542 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.217 4.217 4 N -0.333 5.333 5 C -0.070 4.070 6 C 0.343 3.657 7 O -0.408 6.408 8 C -0.207 4.207 9 C 0.344 3.656 10 O -0.400 6.400 11 N -0.358 5.358 12 C 0.038 3.962 13 H 0.125 0.875 14 C 0.005 3.995 15 N -0.332 5.332 16 C -0.465 4.465 17 H 0.101 0.899 18 C -0.214 4.214 19 N -0.545 5.545 20 Si 0.872 3.128 21 H -0.225 1.225 22 H -0.207 1.207 23 H -0.224 1.224 24 C -0.034 4.034 25 C 0.026 3.974 26 H 0.084 0.916 27 O -0.362 6.362 28 C -0.159 4.159 29 C -0.166 4.166 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.234 0.766 41 H 0.078 0.922 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.079 0.921 46 H 0.225 0.775 47 H 0.129 0.871 48 H 0.131 0.869 49 H 0.123 0.877 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.226 20.923 -11.304 25.887 hybrid contribution 1.011 0.042 -0.421 1.096 sum 11.238 20.965 -11.725 26.519 Atomic orbital electron populations 1.22147 0.94388 1.03062 1.02435 1.21131 0.94439 0.93153 0.88564 1.22121 1.01578 0.95530 1.02515 1.47825 1.50242 1.27624 1.07599 1.21881 1.01268 1.00609 0.83261 1.19248 0.77804 0.79994 0.88630 1.90705 1.54758 1.68190 1.27114 1.21513 0.92648 1.06546 0.99944 1.18872 0.81396 0.78290 0.87030 1.90757 1.75163 1.61052 1.13040 1.45833 1.23121 1.56366 1.10460 1.22254 0.83134 0.95825 0.95012 0.87530 1.21843 0.89403 0.88624 0.99632 1.44638 1.04966 1.32423 1.51151 1.20017 0.96146 1.07172 1.23126 0.89949 1.25630 0.94920 0.98694 1.02127 1.70905 1.36159 1.46681 1.00708 0.84360 0.76230 0.75900 0.76323 1.22536 1.20670 1.22434 1.22611 0.94732 0.92250 0.93789 1.23062 0.90765 0.86059 0.97556 0.91614 1.86497 1.42237 1.37651 1.69834 1.23074 0.91988 0.98298 1.02504 1.23112 0.95831 0.98227 0.99406 0.91321 0.91760 0.92091 0.88100 0.92346 0.91306 0.92196 0.92249 0.90706 0.90271 0.76600 0.92249 0.95604 0.92453 0.95161 0.92132 0.77494 0.87077 0.86914 0.87672 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.16 37.16 0.34 -0.93 16 2 C 0.13 1.12 3.25 -67.93 -0.22 0.90 16 3 C -0.16 -1.05 9.19 37.16 0.34 -0.70 16 4 N -0.60 -5.93 2.76 -173.93 -0.48 -6.42 16 5 C 0.07 0.64 9.23 59.85 0.55 1.19 16 6 C 0.56 6.64 6.32 -10.98 -0.07 6.57 16 7 O -0.53 -7.64 16.10 5.55 0.09 -7.55 16 8 C -0.20 -2.32 1.27 -156.81 -0.20 -2.52 16 9 C 0.56 8.14 5.68 -10.99 -0.06 8.08 16 10 O -0.52 -9.20 15.91 5.56 0.09 -9.12 16 11 N -0.71 -10.38 5.10 -51.73 -0.26 -10.64 16 12 C 0.14 2.52 3.00 -65.78 -0.20 2.33 16 13 H 0.11 2.11 7.81 -51.93 -0.41 1.70 16 14 C 0.13 2.78 6.92 -2.53 -0.02 2.76 16 15 N -0.60 -14.91 3.38 -170.07 -0.57 -15.48 16 16 C -0.34 -9.75 10.43 -15.06 -0.16 -9.91 16 17 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 18 C -0.01 -0.35 5.45 -17.43 -0.09 -0.45 16 19 N -0.91 -28.27 13.70 55.49 0.76 -27.51 16 20 Si 1.04 25.67 24.89 -169.99 -4.23 21.44 16 21 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.17 5.06 56.52 0.29 -5.88 16 23 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 24 C 0.09 1.97 4.35 -3.05 -0.01 1.95 16 25 C 0.09 1.43 3.94 -24.89 -0.10 1.33 16 26 H 0.07 0.96 8.00 -51.93 -0.42 0.55 16 27 O -0.56 -8.24 13.40 -35.23 -0.47 -8.72 16 28 C -0.12 -1.21 9.77 -26.73 -0.26 -1.47 16 29 C -0.13 -1.19 9.43 -26.73 -0.25 -1.44 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.46 6.69 -51.93 -0.35 0.11 16 33 H 0.10 1.02 6.91 -51.93 -0.36 0.66 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.36 7.67 -51.93 -0.40 -0.04 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.60 6.45 -51.93 -0.33 0.26 16 39 H 0.08 0.86 5.09 -51.93 -0.26 0.60 16 40 H 0.40 5.34 8.06 -40.82 -0.33 5.01 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.27 8.22 8.73 -40.82 -0.36 7.86 16 44 H 0.03 0.66 4.92 -51.93 -0.26 0.41 16 45 H 0.06 1.39 6.35 -51.93 -0.33 1.06 16 46 H 0.38 3.98 9.12 45.56 0.42 4.40 16 47 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.11 1.05 8.04 -51.93 -0.42 0.63 16 49 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.12 1.16 7.68 -51.93 -0.40 0.76 16 LS Contribution 394.77 15.07 5.95 5.95 Total: -1.00 -34.97 394.77 -6.88 -41.84 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.34 Total: 8.52 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -0.41 Total: 7.68 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -0.56 Total: -60.05 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.29 Total: -25.39 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -4.23 Total: 21.44 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.97 -6.88 -41.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197310755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.670 kcal (2) G-P(sol) polarization free energy of solvation -34.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds