Wall clock time and date at job start Sat Apr 11 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47210 * 2 1 4 4 N 1.46493 * 109.46807 * 119.99703 * 2 1 3 5 5 C 1.34777 * 120.00058 * 154.99685 * 4 2 1 6 6 O 1.21586 * 119.99881 * 354.91795 * 5 4 2 7 7 N 1.34782 * 120.00316 * 175.18786 * 5 4 2 8 8 C 1.46939 * 120.38021 * 4.46976 * 7 5 4 9 9 C 1.53210 * 108.75576 * 233.74851 * 8 7 5 10 10 H 1.09001 * 110.96665 * 186.25120 * 9 8 7 11 11 C 1.53524 * 108.31857 * 64.31366 * 9 8 7 12 12 O 1.42928 * 109.14442 * 298.46722 * 11 9 8 13 13 C 1.42912 * 114.55386 * 298.42180 * 12 11 9 14 14 C 1.53520 * 109.16643 * 61.56882 * 13 12 11 15 15 H 1.09003 * 110.89055 * 183.55282 * 14 13 12 16 16 C 1.46936 * 120.38356 * 184.73726 * 7 5 4 17 17 N 1.47835 * 107.48724 * 308.45584 * 9 8 7 18 18 C 1.34780 * 122.05260 * 241.04588 * 17 9 8 19 19 O 1.21278 * 120.00339 * 179.97438 * 18 17 9 20 20 C 1.50702 * 119.99706 * 359.97418 * 18 17 9 21 21 C 1.53001 * 109.47109 * 180.02562 * 20 18 17 22 22 C 1.50702 * 109.47489 * 179.97438 * 21 20 18 23 23 H 1.07998 * 119.99510 * 359.97438 * 22 21 20 24 24 C 1.37876 * 120.00186 * 179.97438 * 22 21 20 25 25 N 1.31507 * 119.99926 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99931 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47005 * 90.00041 * 26 24 22 28 28 H 1.48495 * 109.47013 * 209.99924 * 26 24 22 29 29 H 1.48497 * 109.47264 * 329.99888 * 26 24 22 30 30 H 1.08998 * 109.47296 * 300.00606 * 1 2 3 31 31 H 1.09006 * 109.46950 * 60.00126 * 1 2 3 32 32 H 1.08998 * 109.47580 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46903 * 239.99761 * 2 1 3 34 34 H 1.08998 * 109.47485 * 59.99510 * 3 2 1 35 35 H 1.08993 * 109.47228 * 180.02562 * 3 2 1 36 36 H 1.09006 * 109.47061 * 299.99806 * 3 2 1 37 37 H 0.97005 * 120.00736 * 335.00280 * 4 2 1 38 38 H 1.09001 * 109.63232 * 353.50808 * 8 7 5 39 39 H 1.08999 * 109.63061 * 114.10000 * 8 7 5 40 40 H 1.09001 * 109.52542 * 178.57434 * 11 9 8 41 41 H 1.08997 * 109.58183 * 58.40006 * 11 9 8 42 42 H 1.08995 * 109.52539 * 301.66021 * 13 12 11 43 43 H 1.08997 * 109.52397 * 181.47270 * 13 12 11 44 44 H 1.08999 * 109.63644 * 245.88558 * 16 7 5 45 45 H 1.09002 * 109.63399 * 6.48821 * 16 7 5 46 46 H 1.09007 * 109.47319 * 300.00008 * 20 18 17 47 47 H 1.08999 * 109.47590 * 59.99890 * 20 18 17 48 48 H 1.09007 * 109.46811 * 300.00043 * 21 20 18 49 49 H 1.08999 * 109.47210 * 59.99381 * 21 20 18 50 50 H 0.97009 * 120.00230 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 3.2402 -1.2592 1.1945 6 8 3.8996 -1.2801 0.1731 7 7 3.7290 -1.8095 2.3235 8 6 2.8998 -1.8819 3.5344 9 6 3.6666 -1.2410 4.6956 10 1 3.1316 -1.3725 5.6361 11 6 3.8621 0.2489 4.3809 12 8 4.6365 0.3780 3.1866 13 6 5.9502 -0.1788 3.2675 14 6 5.8429 -1.6866 3.5357 15 1 6.8304 -2.1296 3.6649 16 6 5.0993 -2.3387 2.3594 17 7 5.0062 -1.8648 4.7414 18 6 5.4379 -2.5540 5.8162 19 8 6.5441 -3.0511 5.8136 20 6 4.5459 -2.7070 7.0212 21 6 5.2707 -3.5254 8.0916 22 6 4.3790 -3.6779 9.2969 23 1 3.3940 -3.2350 9.2994 24 6 4.8207 -4.3829 10.3965 25 7 4.0423 -4.5164 11.4480 26 14 6.5241 -5.1496 10.3918 27 1 7.5067 -4.1759 10.9318 28 1 6.5200 -6.3697 11.2382 29 1 6.8997 -5.5128 9.0018 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.4621 -0.7386 1.9895 38 1 1.9665 -1.3428 3.3719 39 1 2.6874 -2.9245 3.7710 40 1 4.3845 0.7303 5.2076 41 1 2.8908 0.7226 4.2384 42 1 6.4984 0.2976 4.0802 43 1 6.4747 -0.0128 2.3266 44 1 5.0711 -3.4195 2.4980 45 1 5.6090 -2.0994 1.4261 46 1 4.3022 -1.7223 7.4203 47 1 3.6282 -3.2188 6.7315 48 1 5.5147 -4.5101 7.6928 49 1 6.1882 -3.0133 8.3813 50 1 4.3532 -5.0121 12.2218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271255301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:28 Heat of formation + Delta-G solvation = -86.449918 kcal Electronic energy + Delta-G solvation = -31806.713822 eV Core-core repulsion = 27641.888381 eV Total energy + Delta-G solvation = -4164.825441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.44603 -39.73020 -38.34931 -36.44996 -35.75963 -33.97975 -33.87270 -33.21794 -31.28752 -31.27155 -28.55154 -27.50377 -27.11553 -26.09735 -25.37836 -23.20103 -22.03485 -21.80179 -20.62967 -19.97140 -18.87681 -18.00706 -17.09673 -16.74194 -16.57789 -16.31767 -15.96427 -15.53812 -15.44150 -15.12990 -14.89386 -14.76666 -14.59385 -14.15107 -14.12156 -13.67524 -13.55732 -13.14267 -12.94315 -12.80117 -12.62085 -12.55091 -12.39886 -12.27393 -12.18801 -11.69860 -11.65869 -11.45132 -11.38296 -11.19783 -11.03952 -10.99789 -10.26118 -10.23934 -10.14399 -10.09791 -9.84517 -9.39676 -9.32076 -9.23419 -9.08543 -8.56843 -8.18270 -6.09033 -4.08301 2.37288 2.88628 2.91823 3.19506 3.33436 3.40548 3.50736 3.53077 3.69987 4.35181 4.39681 4.45532 4.53064 4.56383 4.64925 4.77677 4.87847 4.92224 4.97322 5.02105 5.12903 5.26557 5.26897 5.28504 5.34002 5.38244 5.40589 5.43043 5.47367 5.49751 5.59729 5.62773 5.66888 5.79553 5.90493 5.94901 6.03411 6.25957 6.34047 6.40410 6.56398 6.78058 6.93703 7.27693 7.34615 7.45448 7.71977 7.80825 8.38551 8.48524 8.51795 8.92950 9.53956 11.03612 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021293 B = 0.002765 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.642414 B =10122.567507 C =10644.366962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.155 3.845 3 C -0.161 4.161 4 N -0.742 5.742 5 C 0.724 3.276 6 O -0.595 6.595 7 N -0.613 5.613 8 C 0.107 3.893 9 C 0.087 3.913 10 H 0.125 0.875 11 C 0.053 3.947 12 O -0.365 6.365 13 C 0.059 3.941 14 C 0.090 3.910 15 H 0.122 0.878 16 C 0.129 3.871 17 N -0.620 5.620 18 C 0.518 3.482 19 O -0.534 6.534 20 C -0.119 4.119 21 C 0.002 3.998 22 C -0.526 4.526 23 H 0.072 0.928 24 C 0.070 3.930 25 N -0.902 5.902 26 Si 0.877 3.123 27 H -0.277 1.277 28 H -0.288 1.288 29 H -0.261 1.261 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.392 0.608 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.101 0.899 42 H 0.055 0.945 43 H 0.102 0.898 44 H 0.069 0.931 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.023 0.977 49 H 0.019 0.981 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.900 12.177 -22.248 26.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 C -0.220 4.220 4 N -0.400 5.400 5 C 0.426 3.574 6 O -0.474 6.474 7 N -0.349 5.349 8 C -0.018 4.018 9 C -0.018 4.018 10 H 0.143 0.857 11 C -0.025 4.025 12 O -0.283 6.283 13 C -0.019 4.019 14 C -0.015 4.015 15 H 0.140 0.860 16 C 0.005 3.995 17 N -0.357 5.357 18 C 0.309 3.691 19 O -0.409 6.409 20 C -0.159 4.159 21 C -0.036 4.036 22 C -0.564 4.564 23 H 0.091 0.909 24 C -0.132 4.132 25 N -0.541 5.541 26 Si 0.704 3.296 27 H -0.202 1.202 28 H -0.214 1.214 29 H -0.186 1.186 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.228 0.772 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.119 0.881 42 H 0.073 0.927 43 H 0.120 0.880 44 H 0.087 0.913 45 H 0.121 0.879 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.042 0.958 49 H 0.037 0.963 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.875 11.884 -22.967 26.518 hybrid contribution 0.572 -0.520 1.000 1.263 sum -5.303 11.364 -21.967 25.295 Atomic orbital electron populations 1.22084 0.94380 1.02536 1.02827 1.20754 0.93352 0.92693 0.88246 1.22176 1.02364 0.95811 1.01603 1.45342 1.17409 1.60118 1.17129 1.15598 0.81405 0.77295 0.83139 1.90876 1.59986 1.65056 1.31483 1.46856 1.14642 1.63440 1.09979 1.21909 0.93289 1.01711 0.84850 1.22687 0.84903 0.93837 1.00372 0.85694 1.22977 0.96895 0.94022 0.88598 1.87944 1.25989 1.79171 1.35149 1.22936 0.84857 0.91607 1.02507 1.22636 0.96911 0.96968 0.84949 0.86026 1.21805 0.81305 0.97434 0.98996 1.48753 1.15765 1.55220 1.15963 1.21585 0.88052 0.75917 0.83521 1.90661 1.21684 1.47193 1.81345 1.21690 0.98705 1.02879 0.92635 1.19374 0.95923 0.95273 0.92995 1.21071 1.02539 1.34603 0.98174 0.90946 1.24962 0.97321 0.95607 0.95265 1.69903 1.36826 1.41948 1.05410 0.86805 0.84938 0.79069 0.78797 1.20237 1.21398 1.18553 0.92130 0.90975 0.92054 0.89565 0.92648 0.91933 0.92061 0.77191 0.89602 0.90435 0.92334 0.88082 0.92702 0.87996 0.91269 0.87915 0.89700 0.89599 0.95819 0.96314 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 9.38 37.16 0.35 -0.47 16 2 C 0.15 1.21 3.23 -67.93 -0.22 0.99 16 3 C -0.16 -1.25 9.48 37.16 0.35 -0.89 16 4 N -0.74 -6.39 4.99 -58.68 -0.29 -6.69 16 5 C 0.72 8.61 7.53 -86.91 -0.65 7.95 16 6 O -0.60 -9.30 15.39 5.29 0.08 -9.22 16 7 N -0.61 -6.53 1.74 -178.17 -0.31 -6.84 16 8 C 0.11 0.90 5.91 -3.69 -0.02 0.88 16 9 C 0.09 0.82 3.51 -66.82 -0.23 0.59 16 10 H 0.13 1.06 6.36 -51.93 -0.33 0.73 16 11 C 0.05 0.47 6.38 37.43 0.24 0.71 16 12 O -0.36 -3.97 8.59 -35.23 -0.30 -4.27 16 13 C 0.06 0.63 6.38 37.43 0.24 0.87 16 14 C 0.09 1.06 3.61 -66.57 -0.24 0.82 16 15 H 0.12 1.55 7.28 -51.93 -0.38 1.17 16 16 C 0.13 1.48 5.95 -3.45 -0.02 1.45 16 17 N -0.62 -7.94 2.53 -155.46 -0.39 -8.33 16 18 C 0.52 8.88 7.75 -10.98 -0.09 8.79 16 19 O -0.53 -11.23 15.61 5.56 0.09 -11.15 16 20 C -0.12 -2.15 4.06 -27.88 -0.11 -2.26 16 21 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 22 C -0.53 -14.52 9.66 -34.44 -0.33 -14.86 16 23 H 0.07 2.07 7.99 -52.49 -0.42 1.66 16 24 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 25 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 26 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.85 7.51 -51.93 -0.39 0.46 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.39 2.49 6.04 -40.82 -0.25 2.24 16 38 H 0.09 0.48 5.54 -51.93 -0.29 0.20 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.10 1.23 7.01 -51.93 -0.36 0.86 16 46 H 0.08 1.39 7.87 -51.92 -0.41 0.99 16 47 H 0.09 1.40 7.96 -51.93 -0.41 0.99 16 48 H 0.02 0.60 7.15 -51.92 -0.37 0.23 16 49 H 0.02 0.47 7.53 -51.93 -0.39 0.07 16 50 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -36.05 386.89 -8.37 -44.42 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.24 Total: -1.13 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -0.93 Total: 6.46 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.22 Total: -48.45 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.13 Total: -24.63 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.05 -8.37 -44.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271255301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.029 kcal (2) G-P(sol) polarization free energy of solvation -36.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds