Wall clock time and date at job start Sat Apr 11 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47162 * 2 1 4 4 N 1.46507 * 109.47079 * 119.99918 * 2 1 3 5 5 C 1.34773 * 119.99727 * 155.00301 * 4 2 1 6 6 O 1.21585 * 120.00582 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99893 * 180.02562 * 5 4 2 8 8 C 1.47086 * 125.62722 * 0.02562 * 7 5 4 9 9 C 1.54471 * 107.29906 * 180.96975 * 8 7 5 10 10 C 1.54333 * 102.86738 * 21.45100 * 9 8 7 11 11 C 1.47580 * 125.62975 * 179.97438 * 7 5 4 12 12 C 1.52177 * 110.85383 * 207.15947 * 10 9 8 13 13 N 1.46265 * 109.88319 * 283.83363 * 12 10 9 14 14 C 1.46504 * 118.81506 * 162.76431 * 13 12 10 15 15 C 1.53001 * 109.47415 * 269.73268 * 14 13 12 16 16 C 1.50694 * 109.47168 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99902 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99854 * 179.72538 * 18 16 15 21 21 H 1.48504 * 109.47032 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46816 * 120.00323 * 20 18 16 23 23 H 1.48495 * 109.46630 * 240.00111 * 20 18 16 24 24 C 1.33840 * 122.37621 * 342.48915 * 13 12 10 25 25 O 1.21278 * 118.62517 * 183.02802 * 24 13 12 26 26 C 1.50277 * 122.75684 * 2.99436 * 24 13 12 27 27 O 1.42094 * 110.69215 * 83.71396 * 10 9 8 28 28 H 1.08999 * 109.46928 * 300.00018 * 1 2 3 29 29 H 1.09000 * 109.46671 * 60.00195 * 1 2 3 30 30 H 1.09004 * 109.47086 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47305 * 239.99641 * 2 1 3 32 32 H 1.09003 * 109.47491 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47557 * 299.99764 * 3 2 1 34 34 H 1.08999 * 109.47214 * 60.00157 * 3 2 1 35 35 H 0.96996 * 119.99789 * 335.00450 * 4 2 1 36 36 H 1.09001 * 109.88084 * 300.39434 * 8 7 5 37 37 H 1.08999 * 109.87710 * 61.54546 * 8 7 5 38 38 H 1.09003 * 110.73356 * 263.10998 * 9 8 7 39 39 H 1.08999 * 110.73286 * 139.79815 * 9 8 7 40 40 H 1.09001 * 110.37744 * 37.92459 * 11 7 5 41 41 H 1.09001 * 110.37731 * 275.57437 * 11 7 5 42 42 H 1.08999 * 109.56346 * 163.62183 * 12 10 9 43 43 H 1.09005 * 109.29302 * 43.87765 * 12 10 9 44 44 H 1.09000 * 109.46981 * 149.72909 * 14 13 12 45 45 H 1.09002 * 109.46732 * 29.72968 * 14 13 12 46 46 H 1.08998 * 109.46837 * 59.99777 * 15 14 13 47 47 H 1.09002 * 109.46926 * 299.99581 * 15 14 13 48 48 H 0.97001 * 119.99646 * 180.02562 * 19 18 16 49 49 H 1.09002 * 109.38769 * 103.41090 * 26 24 13 50 50 H 1.08992 * 109.39288 * 223.21566 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2591 1.1944 6 8 3.9373 -1.1993 0.2000 7 7 3.6894 -1.8949 2.2947 8 6 2.9530 -2.0428 3.5593 9 6 3.8665 -2.8172 4.5350 10 6 5.2738 -2.5853 3.9454 11 6 5.0007 -2.5585 2.4292 12 6 6.2075 -3.7319 4.3051 13 7 6.6293 -3.6110 5.7004 14 6 7.2063 -4.7808 6.3675 15 6 6.0920 -5.5868 7.0381 16 6 6.6855 -6.7903 7.7238 17 1 7.7509 -6.9634 7.6849 18 6 5.8685 -7.6707 8.4009 19 7 4.5711 -7.4603 8.4479 20 14 6.6033 -9.1668 9.2444 21 1 8.0741 -9.1779 9.0395 22 1 6.3069 -9.1105 10.6984 23 1 6.0130 -10.4006 8.6662 24 6 6.5120 -2.4688 6.3881 25 8 6.9345 -2.4287 7.5242 26 6 5.8795 -1.2337 5.8114 27 8 5.8046 -1.3433 4.3866 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.4622 -0.7387 1.9895 36 1 2.7206 -1.0603 3.9700 37 1 2.0333 -2.6027 3.3893 38 1 3.6185 -3.8787 4.5357 39 1 3.7963 -2.4027 5.5406 40 1 5.7713 -1.9840 1.9149 41 1 4.9550 -3.5731 2.0335 42 1 7.0845 -3.7051 3.6583 43 1 5.6856 -4.6787 4.1655 44 1 7.9218 -4.4528 7.1216 45 1 7.7139 -5.4048 5.6320 46 1 5.3766 -5.9148 6.2840 47 1 5.5844 -4.9628 7.7736 48 1 3.9963 -8.0795 8.9246 49 1 4.8752 -1.1176 6.2187 50 1 6.4798 -0.3629 6.0749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273622741.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:02 Heat of formation + Delta-G solvation = -99.245893 kcal Electronic energy + Delta-G solvation = -30808.153816 eV Core-core repulsion = 26642.773500 eV Total energy + Delta-G solvation = -4165.380316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -41.28609 -40.09138 -38.46739 -36.57540 -35.85286 -35.50266 -33.16753 -32.34423 -30.82874 -30.12629 -29.88738 -27.56156 -27.47134 -26.07006 -24.58490 -23.68319 -22.01571 -21.58109 -20.59244 -20.27965 -18.75296 -18.23851 -17.55338 -16.80028 -16.48825 -16.19953 -15.90568 -15.77157 -15.25346 -15.11121 -14.67429 -14.63127 -14.33540 -14.02387 -13.82933 -13.54429 -13.31609 -13.25623 -12.94492 -12.86375 -12.69195 -12.63396 -12.47828 -12.35762 -12.18752 -11.72370 -11.60241 -11.54800 -11.39394 -11.27462 -11.10399 -10.96616 -10.73225 -10.39540 -10.23069 -9.97103 -9.93282 -9.39798 -9.36074 -9.04245 -8.75822 -8.41866 -8.17816 -6.07399 -4.09993 2.32122 2.81931 3.03049 3.13590 3.27809 3.35429 3.38549 3.41780 3.68950 4.13601 4.32329 4.35549 4.42469 4.51891 4.67960 4.72672 4.88651 4.90648 5.01978 5.08656 5.21578 5.24070 5.29430 5.33202 5.35059 5.38915 5.43583 5.47559 5.48448 5.55554 5.57978 5.68937 5.73852 5.79580 5.94163 5.96855 6.03203 6.31542 6.47322 6.62485 6.78012 6.79205 6.84533 7.50495 7.63013 7.73688 7.84543 7.92044 8.28532 8.40363 8.44731 8.96321 9.54301 11.04100 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.002457 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.034074 B =11392.113486 C =12138.024223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.154 3.846 3 C -0.164 4.164 4 N -0.741 5.741 5 C 0.726 3.274 6 O -0.589 6.589 7 N -0.632 5.632 8 C 0.106 3.894 9 C -0.158 4.158 10 C 0.088 3.912 11 C 0.148 3.852 12 C 0.101 3.899 13 N -0.596 5.596 14 C 0.111 3.889 15 C 0.016 3.984 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.481 3.519 25 O -0.538 6.538 26 C 0.048 3.952 27 O -0.352 6.352 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.395 0.605 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.015 0.985 47 H 0.020 0.980 48 H 0.260 0.740 49 H 0.088 0.912 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 15.460 -15.977 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 C -0.223 4.223 4 N -0.397 5.397 5 C 0.428 3.572 6 O -0.467 6.467 7 N -0.371 5.371 8 C -0.017 4.017 9 C -0.196 4.196 10 C 0.047 3.953 11 C 0.024 3.976 12 C -0.024 4.024 13 N -0.329 5.329 14 C -0.009 4.009 15 C -0.022 4.022 16 C -0.558 4.558 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.267 3.733 25 O -0.416 6.416 26 C -0.031 4.031 27 O -0.270 6.270 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.229 0.771 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.033 0.967 47 H 0.039 0.961 48 H 0.070 0.930 49 H 0.106 0.894 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.915 15.647 -16.285 23.931 hybrid contribution -0.203 -1.087 1.228 1.652 sum -8.117 14.560 -15.057 22.463 Atomic orbital electron populations 1.22085 0.94164 1.02675 1.02904 1.20799 0.93535 0.92696 0.88036 1.22211 1.02377 0.95860 1.01846 1.45247 1.17081 1.59954 1.17396 1.15347 0.81798 0.77893 0.82153 1.90926 1.57354 1.65820 1.32613 1.47495 1.18626 1.58382 1.12551 1.21992 0.95493 1.00291 0.83958 1.23234 0.93803 1.02940 0.99599 1.22236 0.92635 0.85217 0.95221 1.21810 0.85018 0.98566 0.92211 1.21782 0.98530 0.98646 0.83397 1.47696 1.61414 1.12090 1.11657 1.21977 0.98412 0.84095 0.96407 1.19349 0.93157 0.94179 0.95505 1.21121 0.93891 1.07746 1.33075 0.92422 1.24996 0.94831 0.98183 0.96284 1.69973 1.03325 1.37242 1.42746 0.86497 0.79401 0.82554 0.79329 1.19644 1.20961 1.20997 1.20688 0.80595 0.85192 0.86814 1.90757 1.48387 1.84197 1.18285 1.22882 1.02015 0.97294 0.80874 1.87999 1.83787 1.34758 1.20495 0.92101 0.90827 0.91935 0.89391 0.91920 0.91727 0.92626 0.77092 0.91445 0.91119 0.88177 0.88982 0.88821 0.89264 0.90551 0.88738 0.90427 0.91627 0.96666 0.96118 0.93016 0.89429 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 9.38 37.16 0.35 -0.45 16 2 C 0.15 1.19 3.18 -67.93 -0.22 0.97 16 3 C -0.16 -1.23 9.48 37.16 0.35 -0.88 16 4 N -0.74 -6.48 5.04 -58.67 -0.30 -6.77 16 5 C 0.73 8.83 8.45 -86.92 -0.73 8.10 16 6 O -0.59 -9.34 16.27 5.29 0.09 -9.26 16 7 N -0.63 -6.81 3.33 -176.48 -0.59 -7.40 16 8 C 0.11 0.91 6.16 -2.95 -0.02 0.90 16 9 C -0.16 -1.65 5.78 -25.26 -0.15 -1.80 16 10 C 0.09 1.00 0.82 -89.77 -0.07 0.93 16 11 C 0.15 1.60 6.08 -2.88 -0.02 1.58 16 12 C 0.10 1.30 5.36 -4.59 -0.02 1.27 16 13 N -0.60 -10.16 2.82 -174.82 -0.49 -10.65 16 14 C 0.11 2.28 5.27 -4.04 -0.02 2.26 16 15 C 0.02 0.40 5.29 -27.89 -0.15 0.25 16 16 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 20 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 C 0.48 8.43 7.45 -11.61 -0.09 8.34 16 25 O -0.54 -11.78 16.33 5.56 0.09 -11.69 16 26 C 0.05 0.62 6.37 35.80 0.23 0.85 16 27 O -0.35 -4.43 10.43 -35.23 -0.37 -4.80 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.83 7.58 -51.93 -0.39 0.44 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.40 2.60 7.59 -40.82 -0.31 2.29 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 1.09 7.81 -51.93 -0.41 0.68 16 39 H 0.09 1.02 5.95 -51.93 -0.31 0.71 16 40 H 0.09 1.11 8.06 -51.93 -0.42 0.69 16 41 H 0.09 0.85 8.01 -51.93 -0.42 0.43 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.09 1.18 7.84 -51.93 -0.41 0.78 16 44 H 0.08 1.73 7.22 -51.93 -0.37 1.36 16 45 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.09 0.99 6.59 -51.93 -0.34 0.65 16 50 H 0.13 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -35.62 400.46 -9.19 -44.81 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.41 Total: -0.26 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -0.97 Total: 9.17 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.64 Total: -50.39 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.19 Total: -25.75 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.62 -9.19 -44.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273622741.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.433 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds