Wall clock time and date at job start Sat Apr 11 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47162 * 2 1 4 4 N 1.46507 * 109.47079 * 119.99918 * 2 1 3 5 5 C 1.34773 * 119.99727 * 155.00301 * 4 2 1 6 6 O 1.21585 * 120.00582 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99893 * 180.02562 * 5 4 2 8 8 C 1.47086 * 125.62722 * 0.02562 * 7 5 4 9 9 C 1.54471 * 107.29906 * 180.96975 * 8 7 5 10 10 C 1.54333 * 102.86738 * 21.45100 * 9 8 7 11 11 C 1.47580 * 125.62975 * 179.97438 * 7 5 4 12 12 C 1.52177 * 110.85383 * 207.15947 * 10 9 8 13 13 N 1.46265 * 109.88319 * 283.83363 * 12 10 9 14 14 C 1.46504 * 118.81506 * 162.76431 * 13 12 10 15 15 C 1.53001 * 109.47415 * 269.73268 * 14 13 12 16 16 C 1.50694 * 109.47168 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99902 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99854 * 179.72538 * 18 16 15 21 21 H 1.48504 * 109.47032 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46816 * 120.00323 * 20 18 16 23 23 H 1.48495 * 109.46630 * 240.00111 * 20 18 16 24 24 C 1.33840 * 122.37621 * 342.48915 * 13 12 10 25 25 O 1.21278 * 118.62517 * 183.02802 * 24 13 12 26 26 C 1.50277 * 122.75684 * 2.99436 * 24 13 12 27 27 O 1.42094 * 110.69215 * 83.71396 * 10 9 8 28 28 H 1.08999 * 109.46928 * 300.00018 * 1 2 3 29 29 H 1.09000 * 109.46671 * 60.00195 * 1 2 3 30 30 H 1.09004 * 109.47086 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47305 * 239.99641 * 2 1 3 32 32 H 1.09003 * 109.47491 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47557 * 299.99764 * 3 2 1 34 34 H 1.08999 * 109.47214 * 60.00157 * 3 2 1 35 35 H 0.96996 * 119.99789 * 335.00450 * 4 2 1 36 36 H 1.09001 * 109.88084 * 300.39434 * 8 7 5 37 37 H 1.08999 * 109.87710 * 61.54546 * 8 7 5 38 38 H 1.09003 * 110.73356 * 263.10998 * 9 8 7 39 39 H 1.08999 * 110.73286 * 139.79815 * 9 8 7 40 40 H 1.09001 * 110.37744 * 37.92459 * 11 7 5 41 41 H 1.09001 * 110.37731 * 275.57437 * 11 7 5 42 42 H 1.08999 * 109.56346 * 163.62183 * 12 10 9 43 43 H 1.09005 * 109.29302 * 43.87765 * 12 10 9 44 44 H 1.09000 * 109.46981 * 149.72909 * 14 13 12 45 45 H 1.09002 * 109.46732 * 29.72968 * 14 13 12 46 46 H 1.08998 * 109.46837 * 59.99777 * 15 14 13 47 47 H 1.09002 * 109.46926 * 299.99581 * 15 14 13 48 48 H 0.97001 * 119.99646 * 180.02562 * 19 18 16 49 49 H 1.09002 * 109.38769 * 103.41090 * 26 24 13 50 50 H 1.08992 * 109.39288 * 223.21566 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2591 1.1944 6 8 3.9373 -1.1993 0.2000 7 7 3.6894 -1.8949 2.2947 8 6 2.9530 -2.0428 3.5593 9 6 3.8665 -2.8172 4.5350 10 6 5.2738 -2.5853 3.9454 11 6 5.0007 -2.5585 2.4292 12 6 6.2075 -3.7319 4.3051 13 7 6.6293 -3.6110 5.7004 14 6 7.2063 -4.7808 6.3675 15 6 6.0920 -5.5868 7.0381 16 6 6.6855 -6.7903 7.7238 17 1 7.7509 -6.9634 7.6849 18 6 5.8685 -7.6707 8.4009 19 7 4.5711 -7.4603 8.4479 20 14 6.6033 -9.1668 9.2444 21 1 8.0741 -9.1779 9.0395 22 1 6.3069 -9.1105 10.6984 23 1 6.0130 -10.4006 8.6662 24 6 6.5120 -2.4688 6.3881 25 8 6.9345 -2.4287 7.5242 26 6 5.8795 -1.2337 5.8114 27 8 5.8046 -1.3433 4.3866 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.4622 -0.7387 1.9895 36 1 2.7206 -1.0603 3.9700 37 1 2.0333 -2.6027 3.3893 38 1 3.6185 -3.8787 4.5357 39 1 3.7963 -2.4027 5.5406 40 1 5.7713 -1.9840 1.9149 41 1 4.9550 -3.5731 2.0335 42 1 7.0845 -3.7051 3.6583 43 1 5.6856 -4.6787 4.1655 44 1 7.9218 -4.4528 7.1216 45 1 7.7139 -5.4048 5.6320 46 1 5.3766 -5.9148 6.2840 47 1 5.5844 -4.9628 7.7736 48 1 3.9963 -8.0795 8.9246 49 1 4.8752 -1.1176 6.2187 50 1 6.4798 -0.3629 6.0749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273622741.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:57 Heat of formation + Delta-G solvation = -124.628346 kcal Electronic energy + Delta-G solvation = -30809.254482 eV Core-core repulsion = 26642.773500 eV Total energy + Delta-G solvation = -4166.480982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -42.35440 -41.10745 -39.64423 -37.44423 -37.02815 -36.72205 -35.12744 -33.31692 -32.10832 -31.28362 -30.96777 -28.77508 -28.05668 -27.22352 -26.31510 -24.57056 -23.50603 -22.43252 -21.84928 -21.11828 -19.82767 -19.25065 -18.72075 -18.62343 -17.55881 -17.35808 -17.01950 -16.88376 -16.57839 -16.25359 -15.97471 -15.63881 -15.30955 -15.23253 -14.75880 -14.66184 -14.49074 -14.34608 -14.17680 -14.11365 -13.97686 -13.59591 -13.45258 -13.13620 -13.10445 -13.02119 -12.88356 -12.63426 -12.53246 -12.39322 -12.26899 -12.19382 -11.89559 -11.86513 -11.83316 -11.45495 -11.36133 -11.26525 -10.58451 -10.43873 -10.22528 -9.68577 -9.54987 -8.23025 -6.33760 1.39277 1.40490 1.45222 1.51435 1.53610 1.86098 2.12752 2.36740 2.41962 2.95462 3.11122 3.15381 3.39000 3.43277 3.61924 3.97610 4.04689 4.07727 4.16683 4.19688 4.30023 4.36876 4.37576 4.43252 4.48899 4.51463 4.63351 4.67908 4.72738 4.77221 4.78810 4.84511 4.92015 4.94423 4.96392 5.01355 5.10844 5.18509 5.29575 5.37098 5.45679 5.57705 5.63200 5.75946 5.83246 6.02710 6.17814 6.40768 6.80559 6.95168 7.04653 7.35300 7.54129 8.88929 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.002457 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.034074 B =11392.113486 C =12138.024223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.150 3.850 3 C -0.159 4.159 4 N -0.728 5.728 5 C 0.720 3.280 6 O -0.633 6.633 7 N -0.634 5.634 8 C 0.111 3.889 9 C -0.157 4.157 10 C 0.092 3.908 11 C 0.150 3.850 12 C 0.096 3.904 13 N -0.597 5.597 14 C 0.126 3.874 15 C 0.030 3.970 16 C -0.542 4.542 17 H 0.062 0.938 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.282 1.282 23 H -0.274 1.274 24 C 0.472 3.528 25 O -0.591 6.591 26 C 0.061 3.939 27 O -0.353 6.353 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.408 0.592 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.055 0.945 45 H 0.088 0.912 46 H 0.006 0.994 47 H -0.022 1.022 48 H 0.264 0.736 49 H 0.109 0.891 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.555 15.683 -16.731 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.045 3.955 3 C -0.218 4.218 4 N -0.384 5.384 5 C 0.422 3.578 6 O -0.514 6.514 7 N -0.371 5.371 8 C -0.012 4.012 9 C -0.195 4.195 10 C 0.051 3.949 11 C 0.026 3.974 12 C -0.027 4.027 13 N -0.328 5.328 14 C 0.004 3.996 15 C -0.008 4.008 16 C -0.581 4.581 17 H 0.080 0.920 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.789 3.211 21 H -0.186 1.186 22 H -0.208 1.208 23 H -0.199 1.199 24 C 0.261 3.739 25 O -0.472 6.472 26 C -0.018 4.018 27 O -0.271 6.271 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.244 0.756 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.025 0.975 47 H -0.004 1.004 48 H 0.073 0.927 49 H 0.127 0.873 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.994 15.883 -17.059 24.984 hybrid contribution 0.097 -1.141 1.440 1.840 sum -8.897 14.742 -15.619 23.247 Atomic orbital electron populations 1.22026 0.91556 1.03116 1.04195 1.20917 0.95443 0.92305 0.86807 1.22163 1.00346 0.96040 1.03211 1.45205 1.16020 1.58964 1.18247 1.15559 0.82398 0.78050 0.81827 1.90893 1.58762 1.67466 1.34287 1.47499 1.18681 1.58016 1.12910 1.22078 0.95389 1.01204 0.82485 1.23208 0.93576 1.02972 0.99776 1.22208 0.92688 0.84225 0.95740 1.21784 0.85054 0.99202 0.91338 1.22051 0.99856 0.99705 0.81104 1.47715 1.60928 1.11016 1.13142 1.21530 0.96416 0.85108 0.96543 1.19129 0.93930 0.93478 0.94262 1.21559 0.94300 1.08690 1.33529 0.92009 1.25920 0.95235 1.01379 0.96948 1.70088 1.04686 1.38521 1.43559 0.85403 0.79015 0.78737 0.77921 1.18627 1.20816 1.19936 1.21615 0.79701 0.86381 0.86204 1.90727 1.50657 1.85197 1.20649 1.22875 1.02882 0.95119 0.80888 1.88019 1.83912 1.35100 1.20069 0.90781 0.89549 0.91912 0.91616 0.94930 0.90106 0.91535 0.75574 0.89865 0.89074 0.88674 0.89491 0.89947 0.87893 0.88628 0.88236 0.92661 0.89382 0.97536 1.00374 0.92731 0.87320 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.38 71.98 0.68 -0.45 16 2 C 0.15 2.13 3.18 44.99 0.14 2.27 16 3 C -0.16 -2.20 9.48 71.98 0.68 -1.52 16 4 N -0.73 -11.57 5.04 -457.81 -2.31 -13.88 16 5 C 0.72 16.84 8.45 179.06 1.51 18.35 16 6 O -0.63 -20.20 16.27 -3.98 -0.06 -20.26 16 7 N -0.63 -12.64 3.33 -830.53 -2.77 -15.40 16 8 C 0.11 1.64 6.16 86.77 0.53 2.18 16 9 C -0.16 -3.05 5.78 31.55 0.18 -2.87 16 10 C 0.09 1.98 0.82 -10.25 -0.01 1.97 16 11 C 0.15 3.05 6.08 86.54 0.53 3.58 16 12 C 0.10 2.36 5.36 86.15 0.46 2.82 16 13 N -0.60 -20.33 2.82 -825.92 -2.33 -22.66 16 14 C 0.13 5.24 5.27 86.38 0.46 5.69 16 15 C 0.03 1.55 5.29 29.85 0.16 1.71 16 16 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 17 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 18 C 0.00 0.20 5.46 84.66 0.46 0.66 16 19 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 20 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 C 0.47 16.62 7.45 87.67 0.65 17.28 16 25 O -0.59 -26.66 16.33 -3.02 -0.05 -26.71 16 26 C 0.06 1.48 6.37 71.10 0.45 1.94 16 27 O -0.35 -8.26 10.43 -148.98 -1.55 -9.82 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.07 1.24 7.58 -2.39 -0.02 1.22 16 32 H 0.03 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.41 4.30 7.59 -92.71 -0.70 3.60 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.96 7.81 -2.39 -0.02 1.95 16 39 H 0.09 1.80 5.95 -2.39 -0.01 1.79 16 40 H 0.08 1.90 8.06 -2.39 -0.02 1.88 16 41 H 0.10 1.81 8.01 -2.39 -0.02 1.79 16 42 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.10 2.38 7.84 -2.38 -0.02 2.37 16 44 H 0.05 2.55 7.22 -2.39 -0.02 2.53 16 45 H 0.09 3.24 8.04 -2.39 -0.02 3.22 16 46 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 47 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 48 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 49 H 0.11 2.25 6.59 -2.39 -0.02 2.23 16 50 H 0.15 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -79.77 400.46 0.59 -79.17 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.23 Total: 15.37 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 7.13 Total: 23.38 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -7.12 Total: -107.01 kcal Atomic # 8 Polarization: -55.12 SS G_CDS: -1.67 Total: -56.79 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -79.77 0.59 -79.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273622741.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.454 kcal (2) G-P(sol) polarization free energy of solvation -79.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds