Wall clock time and date at job start Sat Apr 11 2020 05:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47101 * 2 1 4 4 N 1.46503 * 109.47184 * 179.97438 * 3 2 1 5 5 C 1.34773 * 119.99939 * 180.02562 * 4 3 2 6 6 O 1.21589 * 120.00398 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99916 * 180.02562 * 5 4 3 8 8 C 1.47084 * 125.62927 * 359.97438 * 7 5 4 9 9 C 1.54469 * 107.29850 * 179.02882 * 8 7 5 10 10 C 1.54308 * 102.87242 * 338.54538 * 9 8 7 11 11 C 1.47584 * 125.62762 * 179.97438 * 7 5 4 12 12 C 1.52019 * 110.69384 * 152.79020 * 10 9 8 13 13 N 1.46277 * 109.96489 * 170.21093 * 12 10 9 14 14 C 1.46503 * 118.81399 * 162.92049 * 13 12 10 15 15 C 1.53003 * 109.47043 * 270.00072 * 14 13 12 16 16 C 1.50702 * 109.47052 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99927 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99516 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00708 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99359 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47303 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47022 * 119.99951 * 20 18 16 23 23 H 1.48500 * 109.47198 * 239.99953 * 20 18 16 24 24 C 1.33835 * 122.36622 * 342.92132 * 13 12 10 25 25 O 1.21281 * 118.61224 * 182.98616 * 24 13 12 26 26 C 1.50276 * 122.76685 * 2.70462 * 24 13 12 27 27 O 1.42098 * 110.71680 * 276.30164 * 10 9 8 28 28 H 1.08996 * 109.47149 * 60.00118 * 1 2 3 29 29 H 1.09000 * 109.47023 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46989 * 300.00079 * 1 2 3 31 31 H 1.09001 * 109.47274 * 239.99895 * 2 1 3 32 32 H 1.09005 * 109.47522 * 120.00280 * 2 1 3 33 33 H 1.09003 * 109.46807 * 60.00221 * 3 2 1 34 34 H 1.08996 * 109.47023 * 299.99959 * 3 2 1 35 35 H 0.97008 * 119.99920 * 0.02562 * 4 3 2 36 36 H 1.09001 * 109.88297 * 59.60162 * 8 7 5 37 37 H 1.09001 * 109.99855 * 298.52216 * 8 7 5 38 38 H 1.08998 * 110.73509 * 220.19868 * 9 8 7 39 39 H 1.09002 * 110.73346 * 96.88929 * 9 8 7 40 40 H 1.08998 * 110.37452 * 84.42171 * 11 7 5 41 41 H 1.08995 * 110.37585 * 322.06953 * 11 7 5 42 42 H 1.08998 * 109.39356 * 290.36628 * 12 10 9 43 43 H 1.09004 * 109.38661 * 50.05755 * 12 10 9 44 44 H 1.08994 * 109.47506 * 29.99865 * 14 13 12 45 45 H 1.09003 * 109.46887 * 150.00090 * 14 13 12 46 46 H 1.09002 * 109.46655 * 299.99904 * 15 14 13 47 47 H 1.08994 * 109.47420 * 60.00015 * 15 14 13 48 48 H 0.96996 * 120.00565 * 179.97438 * 19 18 16 49 49 H 1.08999 * 109.39093 * 103.44325 * 26 24 13 50 50 H 1.09002 * 109.38718 * 223.24635 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1788 2.6097 0.0012 6 8 3.5709 3.6627 0.0018 7 7 5.5267 2.6097 0.0013 8 6 6.3835 1.4142 0.0012 9 6 7.8496 1.8999 -0.0237 10 6 7.7280 3.3316 -0.5863 11 6 6.3863 3.8093 0.0014 12 6 8.8733 4.2015 -0.0938 13 7 8.8770 5.4759 -0.8118 14 6 9.6354 6.5984 -0.2540 15 6 8.7340 7.4091 0.6794 16 6 9.5138 8.5642 1.2528 17 1 10.5490 8.7056 0.9791 18 6 8.9058 9.4403 2.1267 19 7 7.6452 9.2684 2.4595 20 14 9.8727 10.8716 2.8379 21 1 11.2603 10.8425 2.3100 22 1 9.2221 12.1493 2.4512 23 1 9.9045 10.7605 4.3184 24 6 8.2127 5.6533 -1.9600 25 8 8.3069 6.7216 -2.5265 26 6 7.3597 4.5826 -2.5800 27 8 7.6788 3.3112 -2.0063 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9900 0.6024 0.0006 36 1 6.1779 0.8108 -0.8829 37 1 6.2031 0.8262 0.9012 38 1 8.4518 1.2757 -0.6839 39 1 8.2683 1.9151 0.9826 40 1 6.5266 4.1756 1.0184 41 1 5.9524 4.5873 -0.6266 42 1 8.7532 4.3878 0.9734 43 1 9.8185 3.6865 -0.2656 44 1 10.4893 6.2175 0.3061 45 1 9.9877 7.2371 -1.0640 46 1 7.8800 7.7901 0.1193 47 1 8.3816 6.7705 1.4894 48 1 7.2175 9.8845 3.0746 49 1 6.3086 4.8075 -2.3996 50 1 7.5437 4.5500 -3.6539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273636487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:14 Heat of formation + Delta-G solvation = -101.316709 kcal Electronic energy + Delta-G solvation = -30815.047171 eV Core-core repulsion = 26649.577058 eV Total energy + Delta-G solvation = -4165.470113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.27166 -39.91091 -38.38024 -36.36950 -35.82951 -35.46146 -33.15996 -32.89732 -31.67030 -30.26370 -29.15372 -27.93256 -26.83699 -25.47472 -24.52914 -23.43207 -22.04059 -21.82617 -20.54612 -20.19185 -18.43187 -18.36943 -17.72477 -16.73776 -16.37121 -16.21017 -15.94198 -15.67165 -15.52928 -15.20896 -14.89322 -14.63143 -14.24029 -14.18997 -13.96211 -13.44979 -13.25273 -13.15441 -13.00875 -12.82603 -12.69918 -12.43715 -12.40105 -12.28883 -12.21457 -11.77840 -11.59914 -11.50066 -11.39327 -11.27341 -11.04646 -10.91410 -10.68896 -10.30495 -10.23490 -9.91680 -9.88666 -9.32062 -9.30536 -8.99836 -8.66438 -8.35865 -8.13931 -6.00055 -4.03681 2.38675 2.86407 3.10694 3.17816 3.32095 3.39453 3.42169 3.44911 3.75647 4.13250 4.25726 4.36492 4.47076 4.47176 4.58830 4.71358 4.84016 4.85743 5.00497 5.16355 5.17074 5.24959 5.26999 5.35846 5.36587 5.40321 5.42742 5.47858 5.52491 5.60491 5.62547 5.70534 5.74986 5.75736 5.83508 5.99141 6.06068 6.29408 6.51180 6.65399 6.81814 6.83198 6.86746 7.56190 7.69709 7.80158 7.89516 7.98770 8.34347 8.48287 8.49322 9.02852 9.60382 11.11217 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.002761 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.996065 B =10139.629331 C =11350.446301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.136 3.864 4 N -0.746 5.746 5 C 0.721 3.279 6 O -0.582 6.582 7 N -0.632 5.632 8 C 0.104 3.896 9 C -0.110 4.110 10 C 0.088 3.912 11 C 0.101 3.899 12 C 0.102 3.898 13 N -0.599 5.599 14 C 0.112 3.888 15 C 0.014 3.986 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.481 3.519 25 O -0.537 6.537 26 C 0.047 3.953 27 O -0.352 6.352 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.395 0.605 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.021 0.979 47 H 0.015 0.985 48 H 0.261 0.739 49 H 0.089 0.911 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 -26.183 -4.764 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C 0.012 3.988 4 N -0.403 5.403 5 C 0.422 3.578 6 O -0.459 6.459 7 N -0.371 5.371 8 C -0.020 4.020 9 C -0.148 4.148 10 C 0.046 3.954 11 C -0.022 4.022 12 C -0.023 4.023 13 N -0.332 5.332 14 C -0.008 4.008 15 C -0.024 4.024 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.268 3.732 25 O -0.414 6.414 26 C -0.032 4.032 27 O -0.271 6.271 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.228 0.772 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.040 0.960 47 H 0.033 0.967 48 H 0.070 0.930 49 H 0.107 0.893 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.763 -24.923 -5.066 26.317 hybrid contribution 0.566 0.599 0.684 1.071 sum -6.198 -24.324 -4.381 25.481 Atomic orbital electron populations 1.21673 0.94445 1.02116 1.02515 1.21732 0.97028 0.95890 1.02621 1.21267 0.78121 0.96845 1.02583 1.45100 1.07202 1.06975 1.80982 1.15406 0.80055 0.84278 0.78019 1.90986 1.66771 1.30410 1.57697 1.47490 1.03335 1.07858 1.78385 1.22003 0.90125 0.88299 1.01534 1.22526 0.96161 0.93562 1.02530 1.22205 0.93998 0.96687 0.82479 1.22672 0.88739 0.87998 1.02788 1.21796 0.97943 0.84117 0.98413 1.47739 1.50052 1.12840 1.22543 1.21970 0.94475 0.86426 0.97952 1.19365 0.95288 0.94274 0.93431 1.21099 0.97663 1.10702 1.26488 0.92439 1.25007 0.94903 0.97889 0.96531 1.69979 1.10940 1.37491 1.34587 0.86505 0.80173 0.82453 0.78675 1.19682 1.20959 1.21038 1.20673 0.81307 0.89714 0.81518 1.90755 1.62699 1.26863 1.61095 1.22903 0.99206 0.81365 0.99719 1.87937 1.91058 1.30305 1.17803 0.92264 0.92200 0.92237 0.91367 0.91356 0.91530 0.91578 0.77172 0.91233 0.91267 0.88211 0.88200 0.89502 0.89520 0.88795 0.90382 0.91649 0.90410 0.96047 0.96670 0.92968 0.89288 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.13 -0.74 6.05 -26.73 -0.16 -0.90 16 3 C 0.14 1.20 5.67 -4.04 -0.02 1.18 16 4 N -0.75 -7.26 5.52 -65.22 -0.36 -7.62 16 5 C 0.72 10.19 8.49 -86.92 -0.74 9.45 16 6 O -0.58 -11.16 16.61 5.29 0.09 -11.07 16 7 N -0.63 -7.68 3.33 -176.50 -0.59 -8.27 16 8 C 0.10 0.78 6.16 -2.95 -0.02 0.76 16 9 C -0.11 -0.80 6.12 -25.28 -0.15 -0.96 16 10 C 0.09 1.01 0.82 -89.88 -0.07 0.94 16 11 C 0.10 1.42 5.75 -2.89 -0.02 1.41 16 12 C 0.10 1.32 5.35 -4.66 -0.02 1.29 16 13 N -0.60 -10.65 2.83 -174.91 -0.49 -11.14 16 14 C 0.11 2.37 5.27 -4.04 -0.02 2.35 16 15 C 0.01 0.37 5.29 -27.88 -0.15 0.23 16 16 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.34 13.29 55.43 0.74 -26.61 16 20 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.48 8.99 7.44 -11.61 -0.09 8.90 16 25 O -0.54 -12.34 16.33 5.56 0.09 -12.25 16 26 C 0.05 0.67 6.37 35.80 0.23 0.90 16 27 O -0.35 -4.46 10.43 -35.23 -0.37 -4.83 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.39 2.63 7.46 -40.82 -0.30 2.33 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.57 8.01 -51.93 -0.42 0.15 16 40 H 0.09 1.29 7.79 -51.93 -0.40 0.89 16 41 H 0.09 1.47 5.87 -51.93 -0.30 1.17 16 42 H 0.09 1.21 7.82 -51.93 -0.41 0.80 16 43 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 44 H 0.07 1.23 8.04 -51.93 -0.42 0.82 16 45 H 0.08 1.78 7.22 -51.93 -0.37 1.40 16 46 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 49 H 0.09 1.31 6.63 -51.93 -0.34 0.96 16 50 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -38.02 401.32 -9.58 -47.61 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.43 Total: -0.39 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -1.28 Total: 11.58 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.71 Total: -53.64 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.19 Total: -28.15 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.02 -9.58 -47.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273636487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.711 kcal (2) G-P(sol) polarization free energy of solvation -38.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds