Wall clock time and date at job start Sat Apr 11 2020 05:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47173 * 2 1 4 4 N 1.46903 * 109.47202 * 119.99987 * 2 1 3 5 5 C 1.46897 * 111.00064 * 174.99987 * 4 2 1 6 6 C 1.53241 * 109.34265 * 187.25485 * 5 4 2 7 7 N 1.47083 * 108.51688 * 306.16964 * 6 5 4 8 8 C 1.34777 * 120.88197 * 231.18518 * 7 6 5 9 9 O 1.21341 * 120.00247 * 181.18438 * 8 7 6 10 10 C 1.49450 * 119.99747 * 0.90451 * 8 7 6 11 11 O 1.21356 * 120.00104 * 353.67199 * 10 8 7 12 12 N 1.34777 * 119.99887 * 173.66767 * 10 8 7 13 13 C 1.47421 * 125.64851 * 359.69406 * 12 10 8 14 14 C 1.55133 * 104.72288 * 155.81910 * 13 12 10 15 15 C 1.55153 * 101.48611 * 37.29254 * 14 13 12 16 16 O 1.42907 * 110.71720 * 82.69676 * 15 14 13 17 17 C 1.50699 * 110.72277 * 205.96680 * 15 14 13 18 18 H 1.08005 * 119.99482 * 118.99294 * 17 15 14 19 19 C 1.37868 * 120.00449 * 298.99652 * 17 15 14 20 20 N 1.31509 * 120.00526 * 175.76901 * 19 17 15 21 21 Si 1.86807 * 119.99848 * 355.76947 * 19 17 15 22 22 H 1.48488 * 109.47158 * 94.60285 * 21 19 17 23 23 H 1.48506 * 109.46954 * 214.60696 * 21 19 17 24 24 H 1.48503 * 109.47013 * 334.60079 * 21 19 17 25 25 C 1.47023 * 125.64830 * 180.02562 * 12 10 8 26 26 C 1.47082 * 118.23524 * 51.45773 * 7 6 5 27 27 C 1.46895 * 111.00016 * 299.30122 * 4 2 1 28 28 H 1.08997 * 109.47222 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46826 * 300.00040 * 1 2 3 30 30 H 1.09004 * 109.46701 * 59.99947 * 1 2 3 31 31 H 1.09000 * 109.47325 * 239.99912 * 2 1 3 32 32 H 1.09000 * 109.47094 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46957 * 299.99619 * 3 2 1 34 34 H 1.08997 * 109.47277 * 60.00236 * 3 2 1 35 35 H 1.09004 * 109.49759 * 67.28932 * 5 4 2 36 36 H 1.09008 * 109.49448 * 307.21434 * 5 4 2 37 37 H 1.08996 * 109.63051 * 186.46107 * 6 5 4 38 38 H 1.08998 * 109.78804 * 65.97030 * 6 5 4 39 39 H 1.09002 * 110.36660 * 274.74686 * 13 12 10 40 40 H 1.09001 * 110.36629 * 37.06942 * 13 12 10 41 41 H 1.09006 * 111.18771 * 279.19500 * 14 13 12 42 42 H 1.08996 * 110.93793 * 155.29390 * 14 13 12 43 43 H 0.96701 * 113.99983 * 185.02398 * 16 15 14 44 44 H 0.97001 * 120.00706 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.88360 * 300.44294 * 25 12 10 46 46 H 1.09002 * 109.88050 * 61.45289 * 25 12 10 47 47 H 1.08997 * 109.62655 * 68.25535 * 26 7 6 48 48 H 1.09008 * 109.62162 * 188.82960 * 26 7 6 49 49 H 1.09005 * 109.49256 * 292.70489 * 27 4 2 50 50 H 1.09005 * 109.49214 * 52.78513 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4832 -0.8165 1.1751 6 6 3.9374 -1.6973 2.3439 7 7 3.3806 -1.1456 3.5885 8 6 4.1715 -0.9038 4.6527 9 8 3.6917 -0.4687 5.6788 10 6 5.6384 -1.1776 4.5710 11 8 6.1001 -1.7235 3.5905 12 7 6.4486 -0.8181 5.5864 13 6 6.0239 -0.1454 6.8275 14 6 7.1155 -0.5110 7.8674 15 6 8.3971 -0.4813 6.9935 16 8 8.8835 0.8552 6.8547 17 6 9.4592 -1.3791 7.5740 18 1 9.8322 -2.2149 7.0005 19 6 9.9547 -1.1337 8.8369 20 7 10.8201 -1.9639 9.3767 21 14 9.3968 0.3783 9.7816 22 1 8.2653 0.0159 10.6723 23 1 10.5240 0.8954 10.5985 24 1 8.9578 1.4257 8.8247 25 6 7.9032 -1.0258 5.6366 26 6 1.9368 -0.8705 3.6429 27 6 1.5624 -0.0168 2.4210 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.9336 0.1718 1.2679 36 1 3.7942 -1.2714 0.2346 37 1 5.0260 -1.6995 2.3993 38 1 3.5760 -2.7156 2.2009 39 1 5.9840 0.9338 6.6795 40 1 5.0527 -0.5211 7.1495 41 1 6.9479 -1.5053 8.2815 42 1 7.1650 0.2364 8.6593 43 1 9.6379 0.9390 6.2555 44 1 11.1684 -1.7915 10.2654 45 1 8.1287 -2.0894 5.5599 46 1 8.3832 -0.4854 4.8207 47 1 1.3840 -1.8097 3.6206 48 1 1.7021 -0.3259 4.5576 49 1 2.0395 0.9604 2.4965 50 1 0.4802 0.1083 2.3841 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332384748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:54 Heat of formation + Delta-G solvation = -65.260263 kcal Electronic energy + Delta-G solvation = -31203.020876 eV Core-core repulsion = 27039.114287 eV Total energy + Delta-G solvation = -4163.906588 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.98035 -39.56561 -38.43489 -37.70201 -35.86033 -34.54060 -32.46721 -31.85539 -31.43007 -30.42053 -28.52105 -27.62907 -27.32170 -25.89296 -24.44524 -23.38516 -22.28978 -21.54647 -20.15851 -19.71386 -18.95395 -17.63340 -17.15502 -16.94633 -16.20118 -16.13308 -15.80578 -15.28172 -15.13259 -15.01311 -14.71744 -14.64174 -14.44132 -14.31992 -13.63406 -13.38566 -13.24820 -13.05347 -12.92567 -12.77675 -12.61359 -12.44967 -12.30051 -12.14165 -12.07475 -11.81169 -11.65437 -11.44683 -11.36853 -11.27110 -11.13290 -11.01300 -10.66323 -10.51464 -10.32291 -10.06373 -9.06439 -9.00997 -8.92848 -8.72303 -8.56895 -8.51480 -8.32504 -6.24308 -4.37183 1.53929 2.33666 3.28663 3.29312 3.40574 3.42403 3.63704 3.64895 4.25036 4.40988 4.45562 4.55993 4.70029 4.78593 4.88028 4.95289 5.04376 5.08636 5.15479 5.19171 5.21987 5.26990 5.31565 5.37044 5.44137 5.51176 5.52932 5.60786 5.63337 5.75144 5.76603 5.81397 5.86420 5.93827 5.97678 6.12815 6.21588 6.37335 6.47821 6.61066 6.63879 6.70279 6.74635 7.05589 7.08605 7.40028 7.57686 7.79865 8.13704 8.15113 8.68721 8.83350 9.38183 10.85546 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028618 B = 0.002518 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.163106 B =11116.481005 C =11307.800177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 C -0.188 4.188 4 N -0.533 5.533 5 C 0.041 3.959 6 C 0.059 3.941 7 N -0.585 5.585 8 C 0.512 3.488 9 O -0.518 6.518 10 C 0.515 3.485 11 O -0.527 6.527 12 N -0.570 5.570 13 C 0.094 3.906 14 C -0.125 4.125 15 C 0.215 3.785 16 O -0.571 6.571 17 C -0.552 4.552 18 H 0.079 0.921 19 C 0.089 3.911 20 N -0.885 5.885 21 Si 0.866 3.134 22 H -0.285 1.285 23 H -0.298 1.298 24 H -0.214 1.214 25 C 0.091 3.909 26 C 0.113 3.887 27 C 0.037 3.963 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.040 0.960 36 H 0.087 0.913 37 H 0.160 0.840 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.364 0.636 44 H 0.267 0.733 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.096 0.904 49 H 0.042 0.958 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.037 4.809 -16.776 25.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.257 5.257 5 C -0.087 4.087 6 C -0.062 4.062 7 N -0.319 5.319 8 C 0.295 3.705 9 O -0.394 6.394 10 C 0.298 3.702 11 O -0.408 6.408 12 N -0.300 5.300 13 C -0.028 4.028 14 C -0.163 4.163 15 C 0.175 3.825 16 O -0.377 6.377 17 C -0.589 4.589 18 H 0.097 0.903 19 C -0.117 4.117 20 N -0.521 5.521 21 Si 0.693 3.307 22 H -0.212 1.212 23 H -0.226 1.226 24 H -0.137 1.137 25 C -0.030 4.030 26 C -0.009 4.009 27 C -0.092 4.092 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.176 0.824 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.211 0.789 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.114 0.886 49 H 0.060 0.940 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.662 4.347 -16.205 25.848 hybrid contribution 0.512 1.299 0.145 1.404 sum -19.150 5.646 -16.060 25.623 Atomic orbital electron populations 1.21881 0.94241 1.02506 1.01676 1.21725 0.95808 0.92457 0.93321 1.22494 1.01704 0.98115 1.02399 1.62258 1.11018 1.50786 1.01667 1.22539 0.87131 0.99388 0.99634 1.23372 1.05796 0.96443 0.80637 1.48006 1.08088 1.62188 1.13665 1.20139 0.87709 0.78944 0.83690 1.90694 1.75626 1.44144 1.28966 1.19649 0.86814 0.80708 0.82986 1.90285 1.75863 1.44407 1.30206 1.48482 1.09373 1.54656 1.17515 1.22843 0.99744 0.97133 0.83108 1.23152 0.93582 1.02565 0.97008 1.20029 0.92201 0.81370 0.88879 1.86606 1.52054 1.30202 1.68863 1.21135 1.22008 1.13811 1.01989 0.90309 1.24941 0.93589 0.96123 0.97005 1.69926 1.29797 1.36224 1.16150 0.87235 0.77905 0.85723 0.79857 1.21214 1.22569 1.13658 1.23054 0.77119 1.02482 1.00370 1.21904 0.79935 1.00483 0.98604 1.22633 1.01169 0.95748 0.89612 0.91721 0.92523 0.92254 0.89810 0.92408 0.92020 0.92375 0.94220 0.89508 0.82369 0.90925 0.91167 0.88594 0.89222 0.90508 0.78914 0.92321 0.89983 0.91653 0.90371 0.88553 0.94009 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.00 37.16 0.33 -0.54 16 2 C 0.08 0.54 2.96 -67.71 -0.20 0.34 16 3 C -0.19 -1.33 8.51 37.16 0.32 -1.02 16 4 N -0.53 -4.67 4.61 -226.05 -1.04 -5.72 16 5 C 0.04 0.40 5.14 -3.70 -0.02 0.38 16 6 C 0.06 0.68 6.34 -3.60 -0.02 0.66 16 7 N -0.59 -7.56 3.00 -172.69 -0.52 -8.07 16 8 C 0.51 8.07 7.72 -11.59 -0.09 7.98 16 9 O -0.52 -8.88 13.22 5.50 0.07 -8.80 16 10 C 0.51 8.96 7.83 -11.58 -0.09 8.86 16 11 O -0.53 -9.38 13.36 5.49 0.07 -9.30 16 12 N -0.57 -10.53 3.32 -170.88 -0.57 -11.10 16 13 C 0.09 1.70 6.18 -2.41 -0.01 1.68 16 14 C -0.13 -2.57 5.04 -24.46 -0.12 -2.69 16 15 C 0.22 4.68 0.67 -89.94 -0.06 4.62 16 16 O -0.57 -11.93 9.95 -35.23 -0.35 -12.28 16 17 C -0.55 -14.35 8.81 -34.44 -0.30 -14.65 16 18 H 0.08 2.23 7.82 -52.48 -0.41 1.82 16 19 C 0.09 2.43 5.44 -17.82 -0.10 2.33 16 20 N -0.89 -25.87 13.96 55.43 0.77 -25.09 16 21 Si 0.87 20.66 24.25 -169.99 -4.12 16.54 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.21 -4.92 5.13 56.52 0.29 -4.63 16 25 C 0.09 1.80 6.21 -3.06 -0.02 1.78 16 26 C 0.11 1.18 6.63 -3.37 -0.02 1.16 16 27 C 0.04 0.32 4.78 -3.47 -0.02 0.31 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.34 6.27 -51.93 -0.33 0.01 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 32 H 0.06 0.46 6.69 -51.93 -0.35 0.11 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 35 H 0.04 0.42 6.81 -51.93 -0.35 0.06 16 36 H 0.09 0.72 8.05 -51.92 -0.42 0.30 16 37 H 0.16 2.17 3.94 -56.47 -0.22 1.95 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.10 1.69 5.98 -51.93 -0.31 1.38 16 41 H 0.09 1.87 8.04 -51.93 -0.42 1.45 16 42 H 0.08 1.59 5.32 -51.93 -0.28 1.32 16 43 H 0.36 6.52 9.08 45.56 0.41 6.93 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.08 1.70 7.66 -51.93 -0.40 1.30 16 46 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.10 1.06 7.06 -51.92 -0.37 0.69 16 49 H 0.04 0.41 6.71 -51.93 -0.35 0.06 16 50 H 0.09 0.65 5.97 -51.93 -0.31 0.34 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -30.17 371.52 -7.56 -37.74 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.05 Total: 9.30 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -0.43 Total: 11.21 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -1.36 Total: -49.99 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.20 Total: -30.39 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.12 Total: 16.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.17 -7.56 -37.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332384748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.523 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds