Wall clock time and date at job start Sat Apr 11 2020 05:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.46811 * 2 1 4 4 O 1.21284 * 120.00267 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99926 * 180.02562 * 3 2 1 6 6 C 1.47426 * 125.64822 * 359.97147 * 5 3 2 7 7 C 1.54909 * 104.83473 * 155.90674 * 6 5 3 8 8 C 1.55159 * 101.57890 * 37.00901 * 7 6 5 9 9 H 1.08994 * 110.72595 * 83.04043 * 8 7 6 10 10 C 1.50702 * 110.71727 * 206.13939 * 8 7 6 11 11 O 1.21274 * 120.00711 * 116.16117 * 10 8 7 12 12 N 1.34779 * 119.99791 * 296.15079 * 10 8 7 13 13 C 1.46501 * 120.00307 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47437 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.51559 * 305.00953 * 14 13 12 16 16 C 1.53291 * 109.51295 * 184.89970 * 14 13 12 17 17 N 1.47266 * 108.32348 * 187.76880 * 16 14 13 18 18 C 1.36943 * 120.95610 * 230.48661 * 17 16 14 19 19 H 1.07997 * 119.99678 * 26.25620 * 18 17 16 20 20 C 1.38807 * 119.99689 * 206.24789 * 18 17 16 21 21 N 1.31619 * 120.00420 * 16.91921 * 20 18 17 22 22 Si 1.86804 * 119.99692 * 196.91476 * 20 18 17 23 23 H 1.48500 * 109.47113 * 94.62274 * 22 20 18 24 24 H 1.48507 * 109.46941 * 214.62393 * 22 20 18 25 25 H 1.48493 * 109.47210 * 334.62065 * 22 20 18 26 26 C 1.47147 * 118.06041 * 50.51414 * 17 16 14 27 27 C 1.53295 * 108.38583 * 309.46563 * 26 17 16 28 28 O 1.42960 * 109.22450 * 52.29660 * 27 26 17 29 29 C 1.47319 * 125.61773 * 180.19351 * 5 3 2 30 30 H 1.09000 * 109.47610 * 300.00743 * 1 2 3 31 31 H 1.08999 * 109.47006 * 60.00772 * 1 2 3 32 32 H 1.09000 * 109.46967 * 180.02562 * 1 2 3 33 33 H 1.08988 * 109.47481 * 239.99653 * 2 1 3 34 34 H 1.08999 * 109.47006 * 119.99228 * 2 1 3 35 35 H 1.08999 * 110.36795 * 37.06733 * 6 5 3 36 36 H 1.09005 * 110.45491 * 274.79183 * 6 5 3 37 37 H 1.09002 * 111.00402 * 278.93619 * 7 6 5 38 38 H 1.08998 * 111.00219 * 155.07814 * 7 6 5 39 39 H 0.97007 * 119.99900 * 0.02562 * 12 10 8 40 40 H 1.09006 * 109.46489 * 60.00304 * 13 12 10 41 41 H 1.08994 * 109.47288 * 300.00753 * 13 12 10 42 42 H 1.08999 * 109.68729 * 307.45305 * 16 14 13 43 43 H 1.09000 * 109.67782 * 68.00285 * 16 14 13 44 44 H 0.96992 * 120.00468 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.68491 * 189.74019 * 26 17 16 46 46 H 1.09001 * 109.68001 * 69.18696 * 26 17 16 47 47 H 1.09007 * 109.50807 * 292.38012 * 27 26 17 48 48 H 1.08994 * 109.55587 * 172.25410 * 27 26 17 49 49 H 1.08999 * 110.06323 * 61.67783 * 29 5 3 50 50 H 1.09004 * 109.84672 * 300.42132 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.4210 0.6464 -0.0005 7 6 5.6535 1.3579 -0.6125 8 6 5.5100 2.7878 -0.0274 9 1 5.9266 2.8365 0.9786 10 6 6.1718 3.8004 -0.9261 11 8 5.5063 4.6578 -1.4672 12 7 7.5035 3.7534 -1.1284 13 6 8.1469 4.7374 -2.0025 14 6 9.6508 4.4620 -2.0604 15 1 10.0575 4.4477 -1.0493 16 6 10.3417 5.5617 -2.8748 17 7 11.7490 5.1759 -3.0732 18 6 12.7655 6.0474 -2.7860 19 1 12.6199 6.8225 -2.0482 20 6 13.9830 5.9344 -3.4431 21 7 14.0689 5.2333 -4.5537 22 14 15.4995 6.7776 -2.7512 23 1 16.2585 5.8183 -1.9092 24 1 16.3597 7.2440 -3.8684 25 1 15.0860 7.9409 -1.9261 26 6 12.0308 3.8272 -3.5896 27 6 11.2567 2.8127 -2.7402 28 8 9.8808 3.1970 -2.6856 29 6 3.9819 3.0014 0.0035 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8898 34 1 1.8933 -0.5137 0.8901 35 1 4.1300 -0.2048 -0.6161 36 1 4.6371 0.3214 1.0173 37 1 5.5952 1.3734 -1.7008 38 1 6.5800 0.8905 -0.2789 39 1 8.0359 3.0675 -0.6958 40 1 7.9755 5.7395 -1.6093 41 1 7.7254 4.6634 -3.0050 42 1 9.8500 5.6663 -3.8419 43 1 10.2916 6.5061 -2.3329 44 1 14.9195 5.1547 -5.0131 45 1 13.0995 3.6237 -3.5212 46 1 11.7091 3.7573 -4.6287 47 1 11.6693 2.7925 -1.7314 48 1 11.3407 1.8225 -3.1878 49 1 3.7015 3.5429 0.9069 50 1 3.6677 3.5598 -0.8784 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035570912.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:24 Heat of formation + Delta-G solvation = -96.017678 kcal Electronic energy + Delta-G solvation = -29624.877644 eV Core-core repulsion = 25459.637314 eV Total energy + Delta-G solvation = -4165.240330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.75361 -39.61992 -38.56989 -37.36636 -35.00519 -34.35499 -33.28868 -32.26119 -31.46949 -30.62046 -29.54714 -27.65562 -26.15242 -25.07020 -23.30498 -23.13593 -22.63359 -21.69469 -20.33662 -19.54672 -19.49465 -17.88311 -17.48050 -16.98623 -16.20823 -16.17209 -15.93629 -15.73483 -15.23222 -14.99758 -14.82456 -14.44640 -14.15903 -13.96262 -13.80570 -13.61337 -13.27108 -13.20775 -13.10102 -12.79709 -12.65901 -12.59072 -12.46117 -12.21058 -12.02307 -11.77195 -11.58582 -11.55662 -11.29301 -11.17831 -10.91599 -10.78374 -10.47692 -10.30185 -10.13742 -10.05505 -9.95643 -9.71021 -9.14448 -9.09210 -8.97399 -8.60322 -6.82124 -5.89989 -3.34009 2.34414 2.49748 2.53921 3.13427 3.30181 3.37708 3.39177 3.90434 4.02750 4.14888 4.33845 4.37783 4.45924 4.66780 4.69437 4.80816 4.82066 4.89073 5.01210 5.07154 5.16667 5.27378 5.33285 5.40764 5.41242 5.44835 5.47606 5.57348 5.58850 5.72819 5.76837 5.78479 5.83248 5.92446 5.96057 6.07721 6.21541 6.29736 6.41488 6.43619 6.68920 7.03510 7.14419 7.43253 7.45633 7.65281 7.77583 7.86107 8.12881 8.27275 9.05515 9.67925 10.24504 11.18128 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035464 B = 0.001814 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.334228 B =15434.196510 C =15799.631794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.525 3.475 4 O -0.538 6.538 5 N -0.623 5.623 6 C 0.100 3.900 7 C -0.123 4.123 8 C -0.123 4.123 9 H 0.112 0.888 10 C 0.521 3.479 11 O -0.539 6.539 12 N -0.716 5.716 13 C 0.129 3.871 14 C 0.066 3.934 15 H 0.059 0.941 16 C 0.121 3.879 17 N -0.594 5.594 18 C -0.257 4.257 19 H 0.070 0.930 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.278 1.278 26 C 0.139 3.861 27 C 0.040 3.960 28 O -0.390 6.390 29 C 0.120 3.880 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.403 0.597 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.030 0.970 43 H 0.064 0.936 44 H 0.255 0.745 45 H 0.094 0.906 46 H 0.028 0.972 47 H 0.041 0.959 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.830 -14.555 11.340 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.314 3.686 4 O -0.414 6.414 5 N -0.358 5.358 6 C -0.023 4.023 7 C -0.161 4.161 8 C -0.145 4.145 9 H 0.130 0.870 10 C 0.305 3.695 11 O -0.416 6.416 12 N -0.366 5.366 13 C 0.006 3.994 14 C 0.006 3.994 15 H 0.077 0.923 16 C -0.006 4.006 17 N -0.318 5.318 18 C -0.386 4.386 19 H 0.087 0.913 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.203 1.203 26 C 0.013 3.987 27 C -0.038 4.038 28 O -0.309 6.309 29 C -0.002 4.002 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.238 0.762 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.046 0.954 47 H 0.059 0.941 48 H 0.100 0.900 49 H 0.092 0.908 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.800 -13.547 10.747 25.544 hybrid contribution 1.649 0.187 0.539 1.745 sum -17.152 -13.360 11.287 24.496 Atomic orbital electron populations 1.21545 0.92900 1.01639 1.03474 1.21618 0.98624 0.93396 1.04240 1.20511 0.80170 0.92029 0.75884 1.90729 1.54282 1.46779 1.49620 1.48633 1.05298 1.07934 1.73955 1.22372 0.86879 0.91762 1.01293 1.22819 0.98566 0.92844 1.01902 1.22324 0.96240 0.95328 1.00642 0.86964 1.20126 0.82302 0.85233 0.81794 1.90730 1.63426 1.37403 1.49997 1.45910 1.07456 1.33895 1.49379 1.21450 0.91102 0.91927 0.94953 1.22794 0.92867 0.86987 0.96782 0.92345 1.21466 0.87046 0.94922 0.97197 1.44097 0.99527 1.11331 1.76799 1.19223 0.91372 1.11579 1.16409 0.91274 1.25052 0.99380 0.99842 0.95323 1.70031 1.24768 1.44324 1.15537 0.86217 0.82950 0.79132 0.78140 1.21399 1.21651 1.20310 1.21446 1.00276 0.82874 0.94066 1.23324 0.81746 0.98736 0.99974 1.87781 1.26497 1.35687 1.80956 1.21832 0.89576 0.84680 1.04141 0.91964 0.91894 0.91980 0.88914 0.88971 0.89991 0.90703 0.89610 0.88557 0.76228 0.90041 0.90602 0.95200 0.91745 0.93463 0.88755 0.95367 0.94113 0.90038 0.90841 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.20 37.16 0.34 -0.58 16 2 C -0.14 -0.86 5.43 -27.88 -0.15 -1.01 16 3 C 0.52 5.46 7.85 -10.98 -0.09 5.38 16 4 O -0.54 -7.95 16.31 5.55 0.09 -7.86 16 5 N -0.62 -5.60 3.33 -170.28 -0.57 -6.17 16 6 C 0.10 0.52 6.69 -2.53 -0.02 0.50 16 7 C -0.12 -0.73 6.51 -24.58 -0.16 -0.89 16 8 C -0.12 -1.00 3.33 -89.94 -0.30 -1.30 16 9 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 10 C 0.52 6.22 7.14 -10.98 -0.08 6.14 16 11 O -0.54 -8.75 15.44 5.56 0.09 -8.67 16 12 N -0.72 -8.16 5.48 -60.29 -0.33 -8.49 16 13 C 0.13 1.81 5.34 -4.04 -0.02 1.79 16 14 C 0.07 1.06 2.81 -26.58 -0.07 0.99 16 15 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 16 C 0.12 2.42 6.03 -3.47 -0.02 2.40 16 17 N -0.59 -14.36 3.05 -171.74 -0.52 -14.88 16 18 C -0.26 -6.80 9.65 -15.06 -0.15 -6.95 16 19 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 20 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 21 N -0.90 -25.45 11.14 55.49 0.62 -24.83 16 22 Si 0.91 21.01 29.59 -169.99 -5.03 15.98 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 C 0.14 3.19 5.44 -3.54 -0.02 3.17 16 27 C 0.04 0.72 6.98 37.31 0.26 0.98 16 28 O -0.39 -6.74 10.33 -35.23 -0.36 -7.11 16 29 C 0.12 1.25 6.30 -2.90 -0.02 1.24 16 30 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.42 7.85 -51.94 -0.41 0.02 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.30 7.48 -51.93 -0.39 -0.09 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.09 0.64 8.04 -51.93 -0.42 0.23 16 38 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.40 3.76 8.47 -40.82 -0.35 3.41 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 44 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.09 2.38 6.14 -51.93 -0.32 2.06 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.09 1.24 6.84 -51.93 -0.35 0.88 16 LS Contribution 400.67 15.07 6.04 6.04 Total: -1.00 -34.39 400.67 -9.09 -43.48 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.53 Total: 0.68 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: -0.58 Total: 11.84 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.80 Total: -54.37 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.19 Total: -23.64 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.39 -9.09 -43.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035570912.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.535 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds