Wall clock time and date at job start Sat Apr 11 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47073 * 2 1 4 4 O 1.21283 * 120.00136 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99883 * 180.02562 * 3 2 1 6 6 C 1.47031 * 125.64703 * 0.02562 * 5 3 2 7 7 C 1.54324 * 107.39964 * 181.10408 * 6 5 3 8 8 C 1.55154 * 102.94617 * 22.11390 * 7 6 5 9 9 H 1.08999 * 111.00562 * 82.57350 * 8 7 6 10 10 C 1.50697 * 111.00636 * 206.38706 * 8 7 6 11 11 O 1.21284 * 119.99929 * 118.54431 * 10 8 7 12 12 N 1.34778 * 119.99981 * 298.54362 * 10 8 7 13 13 C 1.46494 * 119.99914 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.47117 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.51292 * 60.10208 * 14 13 12 16 16 C 1.53303 * 109.51536 * 180.25490 * 14 13 12 17 17 N 1.47144 * 108.38452 * 172.22833 * 16 14 13 18 18 C 1.36940 * 120.98402 * 129.48852 * 17 16 14 19 19 H 1.07999 * 119.99731 * 333.71661 * 18 17 16 20 20 C 1.38815 * 119.99849 * 153.71992 * 18 17 16 21 21 N 1.31619 * 119.99800 * 160.04971 * 20 18 17 22 22 Si 1.86794 * 120.00224 * 340.04433 * 20 18 17 23 23 H 1.48492 * 109.47445 * 91.89555 * 22 20 18 24 24 H 1.48500 * 109.47076 * 211.89833 * 22 20 18 25 25 H 1.48507 * 109.47124 * 331.89241 * 22 20 18 26 26 C 1.47158 * 118.03485 * 309.46009 * 17 16 14 27 27 C 1.53293 * 108.38374 * 50.54292 * 26 17 16 28 28 O 1.42962 * 109.22089 * 307.69472 * 27 26 17 29 29 C 1.47745 * 125.82433 * 179.97438 * 5 3 2 30 30 H 1.09002 * 109.47034 * 299.99947 * 1 2 3 31 31 H 1.09007 * 109.47064 * 59.99733 * 1 2 3 32 32 H 1.09001 * 109.47309 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46869 * 239.99581 * 2 1 3 34 34 H 1.09000 * 109.46694 * 120.00134 * 2 1 3 35 35 H 1.08998 * 109.88167 * 61.60913 * 6 5 3 36 36 H 1.08997 * 109.88007 * 300.59204 * 6 5 3 37 37 H 1.08999 * 110.71769 * 140.47850 * 7 6 5 38 38 H 1.09003 * 110.71865 * 263.57008 * 7 6 5 39 39 H 0.97000 * 119.99982 * 0.02562 * 12 10 8 40 40 H 1.08999 * 109.47405 * 300.00207 * 13 12 10 41 41 H 1.09001 * 109.47316 * 60.00437 * 13 12 10 42 42 H 1.08999 * 109.67891 * 291.94760 * 16 14 13 43 43 H 1.08994 * 109.67753 * 52.49971 * 16 14 13 44 44 H 0.96999 * 120.00001 * 179.97438 * 21 20 18 45 45 H 1.08992 * 109.68285 * 290.81255 * 26 17 16 46 46 H 1.09003 * 109.71334 * 170.27990 * 26 17 16 47 47 H 1.09001 * 109.51694 * 187.77322 * 27 26 17 48 48 H 1.09005 * 109.55988 * 67.64414 * 27 26 17 49 49 H 1.08996 * 110.28958 * 37.02612 * 29 5 3 50 50 H 1.09002 * 110.52827 * 274.75464 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.4182 0.6489 -0.0017 7 6 5.7707 1.3916 0.0265 8 6 5.3936 2.7784 0.6111 9 1 5.3439 2.7433 1.6994 10 6 6.3601 3.8393 0.1514 11 8 5.9631 4.7767 -0.5079 12 7 7.6657 3.7465 0.4731 13 6 8.6053 4.7775 0.0257 14 6 10.0118 4.4352 0.5212 15 1 10.3153 3.4696 0.1169 16 6 10.9949 5.5169 0.0591 17 7 12.2952 5.2672 0.7010 18 6 13.4484 5.2232 -0.0361 19 1 13.4120 4.9485 -1.0799 20 6 14.6643 5.5318 0.5585 21 7 15.7884 5.1271 0.0061 22 14 14.7051 6.5212 2.1423 23 1 14.7001 5.5964 3.3041 24 1 15.9360 7.3514 2.1757 25 1 13.5117 7.4028 2.2062 26 6 12.3197 5.0666 2.1587 27 6 11.2722 4.0068 2.5185 28 8 10.0139 4.3767 1.9497 29 6 3.9887 3.0028 -0.0011 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 4.3476 0.0411 -0.9037 36 1 4.3248 0.0154 0.8804 37 1 6.4789 0.8784 0.6770 38 1 6.1766 1.4917 -0.9802 39 1 7.9832 2.9966 1.0001 40 1 8.6049 4.8217 -1.0634 41 1 8.3030 5.7441 0.4287 42 1 11.1061 5.4732 -1.0244 43 1 10.6238 6.4992 0.3512 44 1 16.6380 5.3430 0.4213 45 1 12.0821 6.0036 2.6622 46 1 13.3081 4.7250 2.4662 47 1 11.1768 3.9424 3.6025 48 1 11.5807 3.0394 2.1221 49 1 3.4125 3.6934 0.6145 50 1 4.0752 3.3842 -1.0186 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035570913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:27 Heat of formation + Delta-G solvation = -117.341940 kcal Electronic energy + Delta-G solvation = -29637.869680 eV Core-core repulsion = 25471.704660 eV Total energy + Delta-G solvation = -4166.165019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.54828 -40.66291 -40.09302 -38.19605 -36.66014 -35.80875 -33.94847 -33.67883 -33.10322 -32.21343 -30.17452 -29.38560 -27.70548 -26.13894 -24.83849 -24.06776 -23.48677 -22.91713 -21.85170 -20.88930 -20.14976 -18.98975 -18.61654 -18.22498 -17.69773 -17.30452 -17.18796 -16.85134 -16.53062 -16.15225 -15.88278 -15.86953 -15.57465 -15.35183 -15.25419 -14.60275 -14.54397 -14.45967 -14.16930 -13.94475 -13.81484 -13.53982 -13.50157 -13.46338 -13.12347 -12.97282 -12.84548 -12.58343 -12.38891 -12.37732 -12.24332 -12.07676 -12.06096 -11.82374 -11.57965 -11.38535 -11.15391 -10.98148 -10.91467 -10.51325 -10.12915 -9.71836 -8.98965 -8.20348 -5.54183 1.25704 1.40575 1.48068 1.56745 1.59043 1.78019 2.25396 2.37056 2.69271 3.00512 3.20414 3.23455 3.45335 3.76257 3.79810 3.91976 4.00730 4.13992 4.18301 4.21249 4.23695 4.27611 4.28381 4.31746 4.35494 4.50094 4.56617 4.59713 4.69570 4.71851 4.79526 4.79647 4.86017 4.88750 4.93660 4.96244 5.00886 5.05530 5.13092 5.14049 5.23577 5.36762 5.37422 5.76784 6.07158 6.19175 6.46546 6.54142 6.80799 7.11430 7.20846 7.52959 7.93003 8.98837 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035415 B = 0.001837 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.426826 B =15240.001442 C =15342.526160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.514 3.486 4 O -0.596 6.596 5 N -0.622 5.622 6 C 0.097 3.903 7 C -0.116 4.116 8 C -0.112 4.112 9 H 0.135 0.865 10 C 0.524 3.476 11 O -0.586 6.586 12 N -0.704 5.704 13 C 0.139 3.861 14 C 0.079 3.921 15 H 0.074 0.926 16 C 0.116 3.884 17 N -0.622 5.622 18 C -0.252 4.252 19 H 0.059 0.941 20 C -0.031 4.031 21 N -0.953 5.953 22 Si 0.946 3.054 23 H -0.266 1.266 24 H -0.312 1.312 25 H -0.270 1.270 26 C 0.078 3.922 27 C 0.060 3.940 28 O -0.382 6.382 29 C 0.123 3.877 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.079 0.921 39 H 0.418 0.582 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.034 0.966 44 H 0.263 0.737 45 H 0.033 0.967 46 H 0.065 0.935 47 H 0.122 0.878 48 H 0.058 0.942 49 H 0.059 0.941 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.305 -16.872 4.756 29.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.306 3.694 4 O -0.477 6.477 5 N -0.356 5.356 6 C -0.025 4.025 7 C -0.154 4.154 8 C -0.134 4.134 9 H 0.153 0.847 10 C 0.311 3.689 11 O -0.467 6.467 12 N -0.355 5.355 13 C 0.014 3.986 14 C 0.020 3.980 15 H 0.092 0.908 16 C -0.009 4.009 17 N -0.347 5.347 18 C -0.381 4.381 19 H 0.077 0.923 20 C -0.227 4.227 21 N -0.599 5.599 22 Si 0.775 3.225 23 H -0.192 1.192 24 H -0.241 1.241 25 H -0.195 1.195 26 C -0.047 4.047 27 C -0.017 4.017 28 O -0.301 6.301 29 C 0.000 4.000 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.145 0.855 38 H 0.098 0.902 39 H 0.255 0.745 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.051 0.949 46 H 0.083 0.917 47 H 0.139 0.861 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.061 -15.718 4.392 29.906 hybrid contribution 1.179 1.041 0.394 1.622 sum -23.882 -14.677 4.786 28.437 Atomic orbital electron populations 1.21563 0.93724 1.02734 1.01675 1.21681 0.97814 0.90588 1.06759 1.21400 0.80077 0.93299 0.74648 1.90701 1.55777 1.48783 1.52434 1.48760 1.05756 1.08202 1.72908 1.22376 0.84710 0.90658 1.04732 1.22765 0.97706 0.91688 1.03224 1.22367 0.92222 0.95174 1.03617 0.84720 1.20637 0.82987 0.86436 0.78872 1.90732 1.78578 1.36001 1.41341 1.45712 1.06919 1.27483 1.55412 1.21195 0.85850 0.91894 0.99642 1.22643 0.94054 0.99217 0.82131 0.90846 1.21669 0.84948 0.96369 0.97956 1.44462 1.03252 1.83923 1.03085 1.18867 0.84475 1.39448 0.95294 0.92346 1.25842 0.94844 1.00365 1.01613 1.69939 0.97987 1.48471 1.43458 0.85968 0.75898 0.79745 0.80910 1.19245 1.24064 1.19503 1.22160 0.99787 0.98131 0.84583 1.23011 0.83009 0.96224 0.99496 1.87826 1.32212 1.90556 1.19457 1.21855 0.91934 0.85516 1.00721 0.93671 0.93916 0.89298 0.86441 0.85991 0.88952 0.87745 0.85499 0.90220 0.74466 0.89541 0.91873 0.90864 0.94774 0.92817 0.94949 0.91720 0.86057 0.92337 0.92225 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.20 71.98 0.66 -0.91 16 2 C -0.13 -1.11 5.61 29.85 0.17 -0.95 16 3 C 0.51 9.65 7.85 87.66 0.69 10.33 16 4 O -0.60 -17.62 16.26 -3.04 -0.05 -17.67 16 5 N -0.62 -9.43 3.34 -811.02 -2.71 -12.13 16 6 C 0.10 0.52 6.48 86.73 0.56 1.08 16 7 C -0.12 -0.72 6.37 31.78 0.20 -0.51 16 8 C -0.11 -1.50 3.43 -10.16 -0.03 -1.53 16 9 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 10 C 0.52 11.03 7.16 87.66 0.63 11.66 16 11 O -0.59 -18.20 15.80 -3.04 -0.05 -18.25 16 12 N -0.70 -13.09 5.40 -463.07 -2.50 -15.59 16 13 C 0.14 3.32 5.37 86.38 0.46 3.78 16 14 C 0.08 2.17 2.87 30.70 0.09 2.26 16 15 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 16 C 0.12 4.20 6.02 86.36 0.52 4.72 16 17 N -0.62 -27.75 2.84 -697.55 -1.98 -29.73 16 18 C -0.25 -13.69 10.10 84.03 0.85 -12.84 16 19 H 0.06 3.46 8.06 -2.91 -0.02 3.43 16 20 C -0.03 -1.77 5.26 84.86 0.45 -1.33 16 21 N -0.95 -57.97 13.97 21.65 0.30 -57.67 16 22 Si 0.95 45.11 24.28 68.60 1.67 46.78 16 23 H -0.27 -11.63 6.58 99.48 0.65 -10.97 16 24 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 25 H -0.27 -12.68 6.54 99.48 0.65 -12.03 16 26 C 0.08 3.08 4.38 86.35 0.38 3.45 16 27 C 0.06 1.75 6.98 72.08 0.50 2.25 16 28 O -0.38 -10.70 10.13 -148.98 -1.51 -12.21 16 29 C 0.12 2.46 6.00 86.78 0.52 2.98 16 30 H 0.04 0.66 8.10 -2.39 -0.02 0.64 16 31 H 0.04 0.64 8.10 -2.38 -0.02 0.62 16 32 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.08 0.64 8.04 -2.39 -0.02 0.62 16 39 H 0.42 5.55 8.35 -92.71 -0.77 4.78 16 40 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 2.62 7.96 -2.39 -0.02 2.60 16 43 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 45 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 46 H 0.06 2.76 4.61 -2.39 -0.01 2.75 16 47 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 48 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 49 H 0.06 1.45 8.05 -2.39 -0.02 1.43 16 50 H 0.06 1.43 7.51 -2.39 -0.02 1.42 16 Total: -1.00 -81.38 395.11 -0.13 -81.51 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.05 Total: 10.51 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: 6.64 Total: 24.46 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -6.88 Total: -115.12 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -1.61 Total: -48.13 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.67 Total: 46.78 kcal Total: -81.38 -0.13 -81.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035570913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.832 kcal (2) G-P(sol) polarization free energy of solvation -81.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds