Wall clock time and date at job start Sat Apr 11 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47011 * 2 1 4 4 O 1.21287 * 120.00195 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00116 * 179.97438 * 3 2 1 6 6 C 1.47026 * 125.64753 * 359.97212 * 5 3 2 7 7 C 1.54318 * 107.27005 * 178.97708 * 6 5 3 8 8 C 1.55156 * 102.94512 * 337.80632 * 7 6 5 9 9 H 1.09001 * 111.00588 * 277.39355 * 8 7 6 10 10 C 1.50702 * 111.00569 * 153.57934 * 8 7 6 11 11 O 1.21280 * 119.99766 * 244.58765 * 10 8 7 12 12 N 1.34774 * 120.00194 * 64.58166 * 10 8 7 13 13 C 1.46495 * 119.99837 * 180.02562 * 12 10 8 14 14 C 1.53009 * 109.46954 * 179.97438 * 13 12 10 15 15 H 1.09007 * 109.55074 * 59.87382 * 14 13 12 16 16 C 1.53291 * 109.51358 * 179.97438 * 14 13 12 17 17 N 1.47154 * 108.41709 * 172.24416 * 16 14 13 18 18 C 1.36938 * 120.98009 * 129.46716 * 17 16 14 19 19 H 1.08002 * 119.99667 * 206.23675 * 18 17 16 20 20 C 1.38808 * 119.99845 * 26.24662 * 18 17 16 21 21 N 1.31621 * 120.00268 * 16.90512 * 20 18 17 22 22 Si 1.86801 * 119.99598 * 196.91014 * 20 18 17 23 23 H 1.48503 * 109.47102 * 89.99737 * 22 20 18 24 24 H 1.48505 * 109.47018 * 209.99475 * 22 20 18 25 25 H 1.48500 * 109.47295 * 329.99431 * 22 20 18 26 26 C 1.47154 * 118.03340 * 309.45449 * 17 16 14 27 27 C 1.53290 * 108.38798 * 50.52999 * 26 17 16 28 28 O 1.42959 * 109.22393 * 307.69848 * 27 26 17 29 29 C 1.47468 * 125.63293 * 179.97438 * 5 3 2 30 30 H 1.08998 * 109.47140 * 59.99792 * 1 2 3 31 31 H 1.08993 * 109.46845 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46926 * 300.00335 * 1 2 3 33 33 H 1.08991 * 109.47560 * 240.00095 * 2 1 3 34 34 H 1.09000 * 109.47024 * 119.99440 * 2 1 3 35 35 H 1.09003 * 109.87704 * 59.56014 * 6 5 3 36 36 H 1.08998 * 110.01316 * 298.46724 * 6 5 3 37 37 H 1.09012 * 110.71917 * 219.44751 * 7 6 5 38 38 H 1.08997 * 110.87826 * 96.24331 * 7 6 5 39 39 H 0.97005 * 119.99979 * 359.97438 * 12 10 8 40 40 H 1.08995 * 109.47342 * 60.00036 * 13 12 10 41 41 H 1.09002 * 109.47369 * 299.99682 * 13 12 10 42 42 H 1.09008 * 109.68055 * 52.50469 * 16 14 13 43 43 H 1.08992 * 109.68699 * 291.99062 * 16 14 13 44 44 H 0.97003 * 119.99665 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.67892 * 170.26034 * 26 17 16 46 46 H 1.08999 * 109.67746 * 290.76784 * 26 17 16 47 47 H 1.09000 * 109.51221 * 67.62070 * 27 26 17 48 48 H 1.08999 * 109.51019 * 187.77201 * 27 26 17 49 49 H 1.09006 * 110.34509 * 85.25039 * 29 5 3 50 50 H 1.09007 * 110.40155 * 322.91959 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.4182 0.6491 0.0017 7 6 5.7689 1.3949 -0.0244 8 6 5.3895 2.7808 -0.6099 9 1 5.3422 2.7454 -1.6983 10 6 6.3524 3.8442 -0.1482 11 8 5.9625 4.7501 0.5576 12 7 7.6468 3.7885 -0.5196 13 6 8.5828 4.8220 -0.0703 14 6 9.9764 4.5251 -0.6278 15 1 9.9391 4.5158 -1.7172 16 6 10.9566 5.6064 -0.1588 17 7 12.3167 5.2014 -0.5481 18 6 13.1436 6.0623 -1.2190 19 1 13.9247 5.6744 -1.8561 20 6 12.9780 7.4334 -1.0802 21 7 12.2732 7.9131 -0.0774 22 14 13.7553 8.5980 -2.3168 23 1 12.8034 8.8461 -3.4292 24 1 14.0819 9.8834 -1.6487 25 1 14.9987 7.9902 -2.8554 26 6 12.7619 3.8440 -0.1948 27 6 11.6944 2.8480 -0.6620 28 8 10.4203 3.2507 -0.1537 29 6 3.9830 3.0026 0.0001 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 4.3264 0.0172 -0.8817 36 1 4.3489 0.0392 0.9024 37 1 6.4795 0.8834 -0.6738 38 1 6.1745 1.4994 0.9819 39 1 7.9587 3.0637 -1.0838 40 1 8.6214 4.8286 1.0189 41 1 8.2479 5.7958 -0.4279 42 1 10.8999 5.7081 0.9251 43 1 10.7076 6.5570 -0.6301 44 1 12.1572 8.8713 0.0194 45 1 13.7082 3.6275 -0.6904 46 1 12.8876 3.7685 0.8853 47 1 11.6633 2.8321 -1.7514 48 1 11.9371 1.8529 -0.2894 49 1 4.0666 3.3822 1.0184 50 1 3.4064 3.6921 -0.6167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035570916.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:35 Heat of formation + Delta-G solvation = -96.585862 kcal Electronic energy + Delta-G solvation = -29762.361578 eV Core-core repulsion = 25597.096609 eV Total energy + Delta-G solvation = -4165.264968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.69391 -39.56311 -38.54087 -37.34656 -34.89085 -34.37000 -33.27725 -32.19532 -31.36448 -30.78374 -29.51881 -27.50527 -26.17846 -25.05253 -23.37970 -23.06169 -22.59162 -21.58454 -20.27249 -19.58958 -19.42712 -17.76577 -17.51436 -17.03977 -16.17776 -16.05800 -15.72700 -15.69802 -15.26748 -15.03603 -14.74698 -14.37786 -14.07279 -13.90502 -13.79305 -13.69646 -13.30848 -13.22027 -12.97471 -12.84041 -12.70613 -12.57989 -12.41582 -12.14192 -11.99313 -11.65852 -11.56188 -11.50950 -11.24633 -11.14883 -10.89666 -10.78991 -10.47946 -10.29973 -10.13454 -10.10051 -9.83833 -9.71007 -9.14957 -8.99523 -8.92469 -8.60426 -6.81967 -5.89775 -3.33951 2.34556 2.53863 2.61861 3.24119 3.31575 3.38195 3.39816 3.94079 4.07990 4.18180 4.37619 4.39096 4.48035 4.68319 4.71090 4.83692 4.88998 4.94987 5.07008 5.13001 5.19959 5.30389 5.36887 5.41493 5.47956 5.51341 5.55334 5.59423 5.62819 5.74706 5.79265 5.85113 5.86473 5.94205 5.96086 6.05184 6.17406 6.29770 6.43248 6.57886 6.71902 7.00329 7.16419 7.41749 7.55126 7.65608 7.76207 7.86587 8.23454 8.27638 9.05270 9.68154 10.24803 11.18250 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025221 B = 0.001978 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.918873 B =14152.780726 C =14886.665339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.525 3.475 4 O -0.538 6.538 5 N -0.623 5.623 6 C 0.102 3.898 7 C -0.121 4.121 8 C -0.125 4.125 9 H 0.111 0.889 10 C 0.521 3.479 11 O -0.539 6.539 12 N -0.715 5.715 13 C 0.132 3.868 14 C 0.055 3.945 15 H 0.056 0.944 16 C 0.152 3.848 17 N -0.594 5.594 18 C -0.258 4.258 19 H 0.069 0.931 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.108 3.892 27 C 0.051 3.949 28 O -0.391 6.391 29 C 0.126 3.874 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.402 0.598 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.031 0.969 43 H 0.096 0.904 44 H 0.256 0.744 45 H 0.062 0.938 46 H 0.027 0.973 47 H 0.043 0.957 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.448 -19.615 -2.177 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.315 3.685 4 O -0.415 6.415 5 N -0.359 5.359 6 C -0.021 4.021 7 C -0.159 4.159 8 C -0.147 4.147 9 H 0.129 0.871 10 C 0.306 3.694 11 O -0.416 6.416 12 N -0.366 5.366 13 C 0.008 3.992 14 C -0.004 4.004 15 H 0.074 0.926 16 C 0.025 3.975 17 N -0.318 5.318 18 C -0.387 4.387 19 H 0.087 0.913 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.735 3.265 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.204 1.204 26 C -0.018 4.018 27 C -0.027 4.027 28 O -0.310 6.310 29 C 0.003 3.997 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.237 0.763 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.050 0.950 43 H 0.114 0.886 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.044 0.956 47 H 0.061 0.939 48 H 0.100 0.900 49 H 0.102 0.898 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.334 -18.390 -1.487 24.641 hybrid contribution 1.025 0.428 -1.050 1.528 sum -15.310 -17.962 -2.537 23.737 Atomic orbital electron populations 1.21545 0.92921 1.01622 1.03470 1.21617 0.98593 0.93411 1.04260 1.20502 0.80184 0.92027 0.75821 1.90730 1.54245 1.46787 1.49729 1.48583 1.05262 1.08119 1.73888 1.22058 0.86507 0.91345 1.02217 1.22657 0.96570 0.93555 1.03167 1.22462 0.94926 0.94897 1.02428 0.87118 1.20070 0.82715 0.86146 0.80500 1.90742 1.77605 1.35779 1.37439 1.45942 1.08350 1.29397 1.52886 1.21446 0.86303 0.90839 1.00585 1.23161 0.93149 0.86641 0.97471 0.92607 1.21310 0.82664 0.95320 0.98186 1.44043 1.10678 1.10370 1.66674 1.19197 1.13032 0.86821 1.19695 0.91302 1.25067 0.99945 0.97355 0.97199 1.70016 1.43785 1.12464 1.28234 0.86245 0.78977 0.80445 0.80814 1.21326 1.21614 1.20389 1.21604 0.95709 0.86721 0.97761 1.22998 0.84610 0.97612 0.97511 1.87775 1.35669 1.35830 1.71721 1.22013 0.90564 0.84536 1.02588 0.91940 0.91998 0.91926 0.88955 0.88945 0.90860 0.90820 0.88810 0.89546 0.76344 0.90657 0.89901 0.95049 0.88577 0.93344 0.91979 0.95555 0.93874 0.90017 0.89755 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.20 37.16 0.34 -0.59 16 2 C -0.14 -0.87 5.61 -27.88 -0.16 -1.03 16 3 C 0.53 5.51 7.85 -10.99 -0.09 5.42 16 4 O -0.54 -7.97 16.24 5.55 0.09 -7.88 16 5 N -0.62 -5.77 3.33 -170.48 -0.57 -6.34 16 6 C 0.10 0.58 6.49 -3.06 -0.02 0.56 16 7 C -0.12 -0.78 6.40 -24.90 -0.16 -0.94 16 8 C -0.12 -1.13 3.43 -89.62 -0.31 -1.44 16 9 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 10 C 0.52 6.76 7.15 -10.99 -0.08 6.68 16 11 O -0.54 -9.31 15.76 5.56 0.09 -9.23 16 12 N -0.72 -9.02 5.44 -60.29 -0.33 -9.35 16 13 C 0.13 2.10 5.37 -4.04 -0.02 2.08 16 14 C 0.06 0.98 2.87 -26.58 -0.08 0.91 16 15 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 16 C 0.15 3.46 4.73 -3.53 -0.02 3.44 16 17 N -0.59 -14.34 3.05 -171.83 -0.52 -14.86 16 18 C -0.26 -6.84 9.65 -15.06 -0.15 -6.98 16 19 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 20 C 0.00 0.09 4.95 -17.43 -0.09 0.01 16 21 N -0.90 -25.47 11.14 55.49 0.62 -24.85 16 22 Si 0.91 21.09 29.59 -169.99 -5.03 16.06 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 C 0.11 2.16 6.73 -3.53 -0.02 2.14 16 27 C 0.05 0.82 6.99 37.31 0.26 1.08 16 28 O -0.39 -6.69 10.15 -35.23 -0.36 -7.04 16 29 C 0.13 1.39 6.00 -2.51 -0.02 1.37 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 39 H 0.40 4.17 8.36 -40.82 -0.34 3.83 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.03 0.78 8.14 -51.92 -0.42 0.35 16 43 H 0.10 2.43 6.14 -51.93 -0.32 2.11 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.08 1.09 7.45 -51.93 -0.39 0.71 16 50 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 LS Contribution 401.78 15.07 6.05 6.05 Total: -1.00 -33.99 401.78 -9.15 -43.14 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.60 Total: 1.58 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: -0.59 Total: 12.71 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.80 Total: -55.40 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.18 Total: -24.15 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.99 -9.15 -43.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035570916.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.450 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds