Wall clock time and date at job start Sat Apr 11 2020 05:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.47077 * 2 1 4 4 O 1.21275 * 120.00226 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99592 * 179.97438 * 3 2 1 6 6 C 1.47424 * 125.65198 * 359.97438 * 5 3 2 7 7 C 1.54905 * 104.83498 * 155.90897 * 6 5 3 8 8 C 1.55163 * 101.58078 * 37.00742 * 7 6 5 9 9 H 1.08997 * 110.71515 * 83.04486 * 8 7 6 10 10 C 1.50702 * 110.71760 * 206.13481 * 8 7 6 11 11 O 1.21280 * 119.99695 * 93.96964 * 10 8 7 12 12 N 1.34776 * 120.00061 * 273.69411 * 10 8 7 13 13 C 1.46500 * 120.00134 * 175.49532 * 12 10 8 14 14 C 1.53003 * 109.47105 * 179.25307 * 13 12 10 15 15 H 1.08996 * 109.67616 * 301.70498 * 14 13 12 16 16 C 1.53292 * 109.68008 * 181.18782 * 14 13 12 17 17 O 1.42963 * 109.22309 * 187.97397 * 16 14 13 18 18 C 1.42958 * 114.16368 * 62.58365 * 17 16 14 19 19 C 1.53297 * 109.22417 * 297.41715 * 18 17 16 20 20 N 1.47152 * 108.38435 * 52.30321 * 19 18 17 21 21 C 1.36942 * 120.98242 * 129.48623 * 20 19 18 22 22 H 1.07996 * 119.99855 * 212.67649 * 21 20 19 23 23 C 1.38809 * 119.99870 * 32.67361 * 21 20 19 24 24 N 1.31620 * 120.00165 * 9.80164 * 23 21 20 25 25 Si 1.86796 * 119.99855 * 189.80766 * 23 21 20 26 26 H 1.48497 * 109.47538 * 65.61849 * 25 23 21 27 27 H 1.48501 * 109.47239 * 185.62027 * 25 23 21 28 28 H 1.48502 * 109.47038 * 305.61884 * 25 23 21 29 29 C 1.47318 * 125.61383 * 180.19970 * 5 3 2 30 30 H 1.08998 * 109.47333 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46947 * 300.00354 * 1 2 3 32 32 H 1.09004 * 109.46839 * 59.99613 * 1 2 3 33 33 H 1.08997 * 109.46691 * 240.00097 * 2 1 3 34 34 H 1.08996 * 109.46667 * 120.00091 * 2 1 3 35 35 H 1.08998 * 110.36386 * 37.07024 * 6 5 3 36 36 H 1.08996 * 110.36484 * 274.75132 * 6 5 3 37 37 H 1.09007 * 111.00131 * 278.93662 * 7 6 5 38 38 H 1.08999 * 111.03534 * 155.09735 * 7 6 5 39 39 H 0.97001 * 119.99593 * 355.48627 * 12 10 8 40 40 H 1.09002 * 109.46831 * 299.25183 * 13 12 10 41 41 H 1.08997 * 109.47040 * 59.25229 * 13 12 10 42 42 H 1.09002 * 109.51492 * 307.90130 * 16 14 13 43 43 H 1.09000 * 109.51042 * 68.00022 * 16 14 13 44 44 H 1.08992 * 109.51634 * 57.34442 * 18 17 16 45 45 H 1.09003 * 109.51366 * 177.49949 * 18 17 16 46 46 H 1.08999 * 109.68582 * 172.03199 * 19 18 17 47 47 H 1.09003 * 109.68277 * 292.58670 * 19 18 17 48 48 H 0.97000 * 120.00373 * 180.02562 * 24 23 21 49 49 H 1.09004 * 110.06355 * 61.67754 * 29 5 3 50 50 H 1.09007 * 109.85461 * 300.42025 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.4211 0.6462 0.0017 7 6 5.6541 1.3574 -0.6094 8 6 5.5102 2.7875 -0.0248 9 1 5.9260 2.8363 0.9815 10 6 6.1729 3.7999 -0.9231 11 8 5.5213 4.3840 -1.7628 12 7 7.4886 4.0601 -0.7898 13 6 8.1540 4.9697 -1.7258 14 6 9.6292 5.1054 -1.3434 15 1 9.7109 5.4753 -0.3214 16 6 10.3235 6.0794 -2.3022 17 8 11.7317 6.0581 -2.0566 18 6 12.3488 4.7914 -2.2979 19 6 11.7583 3.7513 -1.3390 20 7 10.2918 3.7959 -1.4518 21 6 9.5650 2.6525 -1.6515 22 1 8.6545 2.6858 -2.2313 23 6 9.9988 1.4509 -1.1087 24 7 10.9939 1.4389 -0.2472 25 14 9.1702 -0.1493 -1.6008 26 1 9.4233 -0.4157 -3.0397 27 1 9.7210 -1.2627 -0.7870 28 1 7.7077 -0.0418 -1.3671 29 6 3.9821 3.0012 0.0048 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.1305 -0.2051 -0.6140 36 1 4.6357 0.3231 1.0203 37 1 5.5968 1.3727 -1.6978 38 1 6.5806 0.8903 -0.2755 39 1 7.9949 3.6452 -0.0739 40 1 8.0760 4.5710 -2.7373 41 1 7.6761 5.9484 -1.6831 42 1 10.1289 5.7780 -3.3315 43 1 9.9399 7.0865 -2.1389 44 1 12.1616 4.4853 -3.3271 45 1 13.4230 4.8719 -2.1309 46 1 12.1172 2.7580 -1.6083 47 1 12.0549 3.9846 -0.3164 48 1 11.2972 0.5992 0.1318 49 1 3.7010 3.5428 0.9079 50 1 3.6688 3.5595 -0.8775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051196419.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:47 Heat of formation + Delta-G solvation = -90.405427 kcal Electronic energy + Delta-G solvation = -31198.080288 eV Core-core repulsion = 27033.083323 eV Total energy + Delta-G solvation = -4164.996965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.37821 -39.29260 -38.45158 -37.02420 -35.35767 -33.65637 -33.04873 -32.01081 -31.26828 -30.46100 -29.19581 -27.30012 -26.12448 -24.87693 -23.53179 -22.89407 -22.27112 -21.42015 -19.86705 -19.43533 -19.20244 -17.56471 -17.18400 -16.67482 -15.99040 -15.81348 -15.73906 -15.45404 -14.95853 -14.77244 -14.67138 -14.44074 -13.99559 -13.78959 -13.67173 -13.43491 -13.22461 -13.04586 -12.91807 -12.64918 -12.42888 -12.24036 -12.01389 -11.93527 -11.76850 -11.60003 -11.39813 -11.36235 -11.02413 -10.88733 -10.82425 -10.73057 -10.47521 -10.25407 -10.12801 -9.86785 -9.73188 -9.48821 -9.02232 -8.74308 -8.67504 -8.38114 -6.79237 -5.98837 -3.50752 2.59382 2.85989 2.99257 3.13190 3.26253 3.28467 3.68969 4.24427 4.31704 4.47214 4.49950 4.73735 4.84890 4.90463 4.97166 5.08603 5.17649 5.18655 5.24024 5.29898 5.38878 5.49349 5.53491 5.58786 5.67330 5.72753 5.78552 5.83447 5.92781 5.96827 6.01243 6.03885 6.07595 6.09995 6.14393 6.17960 6.22490 6.27311 6.46778 6.69352 6.99871 7.01560 7.41417 7.44714 7.60644 7.81000 8.10056 8.12052 8.21649 8.70495 8.96775 9.57059 10.18030 11.07457 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.003231 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.272933 B = 8664.570657 C =10078.934571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 C 0.525 3.475 4 O -0.543 6.543 5 N -0.619 5.619 6 C 0.099 3.901 7 C -0.122 4.122 8 C -0.120 4.120 9 H 0.104 0.896 10 C 0.519 3.481 11 O -0.558 6.558 12 N -0.690 5.690 13 C 0.136 3.864 14 C 0.125 3.875 15 H 0.042 0.958 16 C 0.056 3.944 17 O -0.392 6.392 18 C 0.035 3.965 19 C 0.145 3.855 20 N -0.591 5.591 21 C -0.256 4.256 22 H 0.071 0.929 23 C 0.011 3.989 24 N -0.899 5.899 25 Si 0.890 3.110 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.264 1.264 29 C 0.120 3.880 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.415 0.585 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.083 0.917 44 H 0.040 0.960 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.030 0.970 48 H 0.256 0.744 49 H 0.070 0.930 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 -2.560 1.922 9.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.314 3.686 4 O -0.421 6.421 5 N -0.354 5.354 6 C -0.023 4.023 7 C -0.160 4.160 8 C -0.142 4.142 9 H 0.122 0.878 10 C 0.304 3.696 11 O -0.438 6.438 12 N -0.340 5.340 13 C 0.012 3.988 14 C 0.018 3.982 15 H 0.059 0.941 16 C -0.023 4.023 17 O -0.311 6.311 18 C -0.043 4.043 19 C 0.019 3.981 20 N -0.316 5.316 21 C -0.385 4.385 22 H 0.088 0.912 23 C -0.189 4.189 24 N -0.542 5.542 25 Si 0.720 3.280 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.190 1.190 29 C -0.003 4.003 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.123 0.877 39 H 0.253 0.747 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.108 0.892 47 H 0.048 0.952 48 H 0.066 0.934 49 H 0.088 0.912 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.213 -1.667 1.483 9.480 hybrid contribution 0.136 -1.514 0.035 1.521 sum -9.077 -3.181 1.518 9.737 Atomic orbital electron populations 1.21534 0.93028 1.01471 1.03371 1.21618 0.98467 0.93658 1.04261 1.20447 0.80269 0.91902 0.75978 1.90699 1.54384 1.46783 1.50204 1.48643 1.05227 1.08170 1.73337 1.22417 0.87012 0.91663 1.01251 1.22988 0.98704 0.92652 1.01650 1.22253 0.95447 0.95829 1.00677 0.87756 1.19999 0.82489 0.82645 0.84437 1.90654 1.64004 1.51729 1.37412 1.45942 1.08281 1.46642 1.33156 1.21175 0.91521 0.92420 0.93721 1.21432 0.90527 0.89045 0.97189 0.94091 1.22864 0.82171 0.99062 0.98239 1.87806 1.20656 1.32861 1.89764 1.23350 0.96467 0.85133 0.99381 1.21397 0.83430 0.97751 0.95491 1.44069 1.01337 1.01062 1.85177 1.19138 1.07396 0.85402 1.26567 0.91165 1.25197 0.98639 0.98564 0.96512 1.69965 1.28664 1.25785 1.29831 0.86657 0.79863 0.83353 0.78174 1.21307 1.21772 1.19034 1.21877 0.90108 0.84688 1.03617 0.92108 0.92011 0.91970 0.88976 0.89000 0.90251 0.90743 0.89962 0.87663 0.74695 0.91534 0.92218 0.93530 0.89905 0.94136 0.90247 0.89181 0.95212 0.93379 0.91215 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.20 37.16 0.34 -0.90 16 2 C -0.14 -1.30 5.43 -27.88 -0.15 -1.45 16 3 C 0.52 7.18 7.85 -10.99 -0.09 7.10 16 4 O -0.54 -9.52 16.31 5.56 0.09 -9.42 16 5 N -0.62 -8.16 3.33 -170.29 -0.57 -8.73 16 6 C 0.10 1.08 6.69 -2.53 -0.02 1.06 16 7 C -0.12 -1.63 6.16 -24.58 -0.15 -1.78 16 8 C -0.12 -1.67 3.33 -89.93 -0.30 -1.97 16 9 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 10 C 0.52 8.85 7.04 -10.98 -0.08 8.77 16 11 O -0.56 -11.21 15.53 5.56 0.09 -11.12 16 12 N -0.69 -11.86 3.90 -60.29 -0.23 -12.09 16 13 C 0.14 2.37 4.44 -4.04 -0.02 2.35 16 14 C 0.13 2.32 3.19 -67.42 -0.22 2.10 16 15 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 16 C 0.06 0.95 6.29 37.31 0.23 1.18 16 17 O -0.39 -7.40 10.74 -35.23 -0.38 -7.78 16 18 C 0.03 0.64 6.98 37.31 0.26 0.90 16 19 C 0.14 3.14 5.36 -3.53 -0.02 3.12 16 20 N -0.59 -12.78 3.03 -164.30 -0.50 -13.28 16 21 C -0.26 -5.82 7.08 -15.06 -0.11 -5.93 16 22 H 0.07 1.62 5.90 -52.49 -0.31 1.32 16 23 C 0.01 0.25 5.07 -17.43 -0.09 0.16 16 24 N -0.90 -22.68 11.20 55.49 0.62 -22.06 16 25 Si 0.89 18.33 29.44 -169.99 -5.00 13.32 16 26 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.26 -4.78 4.76 56.52 0.27 -4.52 16 29 C 0.12 1.74 6.43 -2.90 -0.02 1.72 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.09 0.72 7.85 -51.93 -0.41 0.32 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.72 7.48 -51.93 -0.39 0.33 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 38 H 0.11 1.47 6.11 -51.93 -0.32 1.16 16 39 H 0.42 7.37 7.43 -40.82 -0.30 7.07 16 40 H 0.07 1.27 7.46 -51.93 -0.39 0.88 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.09 2.15 6.42 -51.93 -0.33 1.82 16 47 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.26 6.39 8.31 -40.82 -0.34 6.06 16 49 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 50 H 0.09 1.57 6.73 -51.93 -0.35 1.22 16 LS Contribution 388.63 15.07 5.86 5.86 Total: -1.00 -29.49 388.63 -8.84 -38.33 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -8.40 Total: 10.54 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: -0.41 Total: 16.43 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.68 Total: -56.15 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.20 Total: -28.33 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.00 Total: 13.32 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.49 -8.84 -38.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051196419.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.076 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds