Wall clock time and date at job start Sat Apr 11 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.47077 * 2 1 4 4 O 1.21275 * 120.00226 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99592 * 179.97438 * 3 2 1 6 6 C 1.47424 * 125.65198 * 359.97438 * 5 3 2 7 7 C 1.54905 * 104.83498 * 155.90897 * 6 5 3 8 8 C 1.55163 * 101.58078 * 37.00742 * 7 6 5 9 9 H 1.08997 * 110.71515 * 83.04486 * 8 7 6 10 10 C 1.50702 * 110.71760 * 206.13481 * 8 7 6 11 11 O 1.21280 * 119.99695 * 93.96964 * 10 8 7 12 12 N 1.34776 * 120.00061 * 273.69411 * 10 8 7 13 13 C 1.46500 * 120.00134 * 175.49532 * 12 10 8 14 14 C 1.53003 * 109.47105 * 179.25307 * 13 12 10 15 15 H 1.08996 * 109.67616 * 301.70498 * 14 13 12 16 16 C 1.53292 * 109.68008 * 181.18782 * 14 13 12 17 17 O 1.42963 * 109.22309 * 187.97397 * 16 14 13 18 18 C 1.42958 * 114.16368 * 62.58365 * 17 16 14 19 19 C 1.53297 * 109.22417 * 297.41715 * 18 17 16 20 20 N 1.47152 * 108.38435 * 52.30321 * 19 18 17 21 21 C 1.36942 * 120.98242 * 129.48623 * 20 19 18 22 22 H 1.07996 * 119.99855 * 212.67649 * 21 20 19 23 23 C 1.38809 * 119.99870 * 32.67361 * 21 20 19 24 24 N 1.31620 * 120.00165 * 9.80164 * 23 21 20 25 25 Si 1.86796 * 119.99855 * 189.80766 * 23 21 20 26 26 H 1.48497 * 109.47538 * 65.61849 * 25 23 21 27 27 H 1.48501 * 109.47239 * 185.62027 * 25 23 21 28 28 H 1.48502 * 109.47038 * 305.61884 * 25 23 21 29 29 C 1.47318 * 125.61383 * 180.19970 * 5 3 2 30 30 H 1.08998 * 109.47333 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46947 * 300.00354 * 1 2 3 32 32 H 1.09004 * 109.46839 * 59.99613 * 1 2 3 33 33 H 1.08997 * 109.46691 * 240.00097 * 2 1 3 34 34 H 1.08996 * 109.46667 * 120.00091 * 2 1 3 35 35 H 1.08998 * 110.36386 * 37.07024 * 6 5 3 36 36 H 1.08996 * 110.36484 * 274.75132 * 6 5 3 37 37 H 1.09007 * 111.00131 * 278.93662 * 7 6 5 38 38 H 1.08999 * 111.03534 * 155.09735 * 7 6 5 39 39 H 0.97001 * 119.99593 * 355.48627 * 12 10 8 40 40 H 1.09002 * 109.46831 * 299.25183 * 13 12 10 41 41 H 1.08997 * 109.47040 * 59.25229 * 13 12 10 42 42 H 1.09002 * 109.51492 * 307.90130 * 16 14 13 43 43 H 1.09000 * 109.51042 * 68.00022 * 16 14 13 44 44 H 1.08992 * 109.51634 * 57.34442 * 18 17 16 45 45 H 1.09003 * 109.51366 * 177.49949 * 18 17 16 46 46 H 1.08999 * 109.68582 * 172.03199 * 19 18 17 47 47 H 1.09003 * 109.68277 * 292.58670 * 19 18 17 48 48 H 0.97000 * 120.00373 * 180.02562 * 24 23 21 49 49 H 1.09004 * 110.06355 * 61.67754 * 29 5 3 50 50 H 1.09007 * 109.85461 * 300.42025 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.4211 0.6462 0.0017 7 6 5.6541 1.3574 -0.6094 8 6 5.5102 2.7875 -0.0248 9 1 5.9260 2.8363 0.9815 10 6 6.1729 3.7999 -0.9231 11 8 5.5213 4.3840 -1.7628 12 7 7.4886 4.0601 -0.7898 13 6 8.1540 4.9697 -1.7258 14 6 9.6292 5.1054 -1.3434 15 1 9.7109 5.4753 -0.3214 16 6 10.3235 6.0794 -2.3022 17 8 11.7317 6.0581 -2.0566 18 6 12.3488 4.7914 -2.2979 19 6 11.7583 3.7513 -1.3390 20 7 10.2918 3.7959 -1.4518 21 6 9.5650 2.6525 -1.6515 22 1 8.6545 2.6858 -2.2313 23 6 9.9988 1.4509 -1.1087 24 7 10.9939 1.4389 -0.2472 25 14 9.1702 -0.1493 -1.6008 26 1 9.4233 -0.4157 -3.0397 27 1 9.7210 -1.2627 -0.7870 28 1 7.7077 -0.0418 -1.3671 29 6 3.9821 3.0012 0.0048 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.1305 -0.2051 -0.6140 36 1 4.6357 0.3231 1.0203 37 1 5.5968 1.3727 -1.6978 38 1 6.5806 0.8903 -0.2755 39 1 7.9949 3.6452 -0.0739 40 1 8.0760 4.5710 -2.7373 41 1 7.6761 5.9484 -1.6831 42 1 10.1289 5.7780 -3.3315 43 1 9.9399 7.0865 -2.1389 44 1 12.1616 4.4853 -3.3271 45 1 13.4230 4.8719 -2.1309 46 1 12.1172 2.7580 -1.6083 47 1 12.0549 3.9846 -0.3164 48 1 11.2972 0.5992 0.1318 49 1 3.7010 3.5428 0.9079 50 1 3.6688 3.5595 -0.8775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051196419.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:46 Heat of formation + Delta-G solvation = -110.321163 kcal Electronic energy + Delta-G solvation = -31198.943899 eV Core-core repulsion = 27033.083323 eV Total energy + Delta-G solvation = -4165.860576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.54820 -40.60254 -39.91199 -38.19038 -36.89539 -35.27549 -33.94570 -33.37450 -32.61725 -31.98887 -30.23886 -28.96618 -27.44357 -25.97761 -25.19381 -23.87193 -23.56345 -22.78547 -21.42521 -20.81343 -20.17767 -18.89402 -18.27452 -18.13758 -17.52903 -17.25239 -16.88384 -16.52930 -16.39238 -16.19924 -16.12184 -15.73661 -15.36620 -15.30895 -14.95278 -14.67437 -14.60994 -14.27618 -14.16112 -13.91730 -13.58440 -13.31503 -13.16721 -13.11145 -12.96478 -12.73888 -12.70659 -12.58834 -12.46889 -12.30641 -12.08854 -12.01767 -11.91420 -11.85462 -11.69133 -11.29546 -10.97483 -10.91040 -10.57077 -10.48125 -9.87478 -9.73747 -8.55663 -7.78903 -5.33721 1.49132 1.57743 1.59164 1.62442 1.63905 1.84336 2.38239 2.55345 3.03626 3.32037 3.37884 3.46142 3.46717 3.75810 3.80655 4.04965 4.15568 4.17302 4.20750 4.22759 4.24841 4.26967 4.35952 4.47768 4.55120 4.61293 4.64165 4.66433 4.68763 4.74020 4.76907 4.84374 4.93512 4.98563 5.01140 5.04900 5.06952 5.12673 5.16606 5.30967 5.35105 5.57373 5.64485 5.74763 6.30964 6.42366 6.45806 6.69825 7.09486 7.15956 7.31227 7.81584 8.40006 9.25289 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.003231 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.272933 B = 8664.570657 C =10078.934571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.515 3.485 4 O -0.593 6.593 5 N -0.620 5.620 6 C 0.103 3.897 7 C -0.123 4.123 8 C -0.112 4.112 9 H 0.129 0.871 10 C 0.519 3.481 11 O -0.592 6.592 12 N -0.689 5.689 13 C 0.143 3.857 14 C 0.127 3.873 15 H 0.036 0.964 16 C 0.056 3.944 17 O -0.399 6.399 18 C 0.045 3.955 19 C 0.151 3.849 20 N -0.604 5.604 21 C -0.247 4.247 22 H 0.068 0.932 23 C -0.030 4.030 24 N -0.929 5.929 25 Si 0.936 3.064 26 H -0.304 1.304 27 H -0.303 1.303 28 H -0.224 1.224 29 C 0.123 3.877 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.414 0.586 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.115 0.885 44 H 0.042 0.958 45 H 0.103 0.897 46 H 0.064 0.936 47 H 0.006 0.994 48 H 0.248 0.752 49 H 0.072 0.928 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.222 -3.740 2.278 10.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.172 4.172 3 C 0.307 3.693 4 O -0.474 6.474 5 N -0.354 5.354 6 C -0.018 4.018 7 C -0.161 4.161 8 C -0.134 4.134 9 H 0.147 0.853 10 C 0.305 3.695 11 O -0.474 6.474 12 N -0.338 5.338 13 C 0.018 3.982 14 C 0.021 3.979 15 H 0.054 0.946 16 C -0.023 4.023 17 O -0.317 6.317 18 C -0.033 4.033 19 C 0.025 3.975 20 N -0.330 5.330 21 C -0.376 4.376 22 H 0.086 0.914 23 C -0.227 4.227 24 N -0.574 5.574 25 Si 0.765 3.235 26 H -0.232 1.232 27 H -0.230 1.230 28 H -0.148 1.148 29 C -0.001 4.001 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.251 0.749 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.133 0.867 44 H 0.061 0.939 45 H 0.121 0.879 46 H 0.082 0.918 47 H 0.025 0.975 48 H 0.058 0.942 49 H 0.091 0.909 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.988 -2.845 1.840 10.547 hybrid contribution 0.401 -1.065 -0.114 1.144 sum -9.587 -3.910 1.727 10.496 Atomic orbital electron populations 1.21548 0.93213 1.02809 1.01828 1.21708 0.98235 0.90625 1.06588 1.21379 0.79870 0.93369 0.74716 1.90676 1.55576 1.48671 1.52462 1.48763 1.05772 1.08045 1.72794 1.22610 0.84769 0.91218 1.03245 1.22966 1.00081 0.92343 1.00693 1.22243 0.94689 0.95259 1.01171 0.85277 1.20506 0.82127 0.82591 0.84256 1.90642 1.64613 1.53111 1.39002 1.45946 1.08432 1.46542 1.32903 1.21084 0.91067 0.93181 0.92834 1.21515 0.91070 0.87894 0.97414 0.94590 1.22991 0.81211 1.00312 0.97740 1.87806 1.21563 1.32572 1.89774 1.23226 0.97564 0.84161 0.98324 1.21201 0.83875 0.97403 0.94992 1.44269 1.01507 1.02018 1.85217 1.19214 1.06964 0.85925 1.25532 0.91429 1.25739 0.99255 1.00980 0.96715 1.70119 1.30243 1.25724 1.31348 0.85923 0.81598 0.79807 0.76214 1.23208 1.23022 1.14800 1.21698 0.90546 0.85666 1.02169 0.89203 0.93355 0.93836 0.86800 0.86083 0.87584 0.87905 0.91765 0.87748 0.74879 0.93203 0.90620 0.93378 0.86726 0.93942 0.87937 0.91792 0.97545 0.94225 0.90926 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.20 71.98 0.66 -1.54 16 2 C -0.13 -2.02 5.43 29.85 0.16 -1.86 16 3 C 0.52 13.32 7.85 87.65 0.69 14.01 16 4 O -0.59 -20.92 16.31 -3.02 -0.05 -20.97 16 5 N -0.62 -15.10 3.33 -811.06 -2.70 -17.80 16 6 C 0.10 1.83 6.69 86.85 0.58 2.41 16 7 C -0.12 -2.97 6.16 31.99 0.20 -2.77 16 8 C -0.11 -2.95 3.33 -10.35 -0.03 -2.98 16 9 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 10 C 0.52 17.41 7.04 87.66 0.62 18.02 16 11 O -0.59 -23.95 15.53 -3.03 -0.05 -24.00 16 12 N -0.69 -23.23 3.90 -463.05 -1.80 -25.03 16 13 C 0.14 4.88 4.44 86.38 0.38 5.26 16 14 C 0.13 4.61 3.19 44.97 0.14 4.75 16 15 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 16 C 0.06 1.80 6.29 72.08 0.45 2.26 16 17 O -0.40 -14.34 10.74 -148.98 -1.60 -15.94 16 18 C 0.05 1.62 6.98 72.08 0.50 2.13 16 19 C 0.15 6.60 5.36 86.35 0.46 7.07 16 20 N -0.60 -26.09 3.03 -673.73 -2.04 -28.13 16 21 C -0.25 -11.19 7.08 84.03 0.60 -10.60 16 22 H 0.07 3.10 5.90 -2.91 -0.02 3.08 16 23 C -0.03 -1.42 5.07 84.86 0.43 -0.99 16 24 N -0.93 -47.56 11.20 21.65 0.24 -47.32 16 25 Si 0.94 37.00 29.44 68.60 2.02 39.02 16 26 H -0.30 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.30 -12.58 7.11 99.48 0.71 -11.87 16 28 H -0.22 -7.29 4.76 99.48 0.47 -6.82 16 29 C 0.12 3.49 6.43 86.67 0.56 4.04 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 32 H 0.04 0.85 8.10 -2.39 -0.02 0.83 16 33 H 0.11 1.30 7.85 -2.39 -0.02 1.28 16 34 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.11 1.38 7.48 -2.39 -0.02 1.36 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.80 8.04 -2.38 -0.02 1.78 16 38 H 0.10 2.57 6.11 -2.39 -0.01 2.56 16 39 H 0.41 14.38 7.43 -92.71 -0.69 13.69 16 40 H 0.05 1.88 7.46 -2.39 -0.02 1.87 16 41 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 44 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 46 H 0.06 3.13 6.42 -2.39 -0.02 3.11 16 47 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 48 H 0.25 12.65 8.31 -92.71 -0.77 11.88 16 49 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.06 2.04 6.73 -2.38 -0.02 2.02 16 Total: -1.00 -66.68 388.63 0.44 -66.24 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.02 Total: 34.71 kcal Atomic # 6 Polarization: 32.81 SS G_CDS: 6.40 Total: 39.22 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -6.30 Total: -118.28 kcal Atomic # 8 Polarization: -59.21 SS G_CDS: -1.70 Total: -60.91 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.02 Total: 39.02 kcal Total: -66.68 0.44 -66.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051196419.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.083 kcal (2) G-P(sol) polarization free energy of solvation -66.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds