Wall clock time and date at job start Sat Apr 11 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46920 * 2 1 4 4 O 1.21278 * 120.00329 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99831 * 179.97438 * 3 2 1 6 6 C 1.47032 * 125.64905 * 359.97202 * 5 3 2 7 7 C 1.54325 * 107.27075 * 178.96116 * 6 5 3 8 8 C 1.55154 * 102.94203 * 337.81032 * 7 6 5 9 9 H 1.08998 * 111.00647 * 277.38744 * 8 7 6 10 10 C 1.50706 * 111.00360 * 153.57679 * 8 7 6 11 11 O 1.21277 * 119.99747 * 241.45366 * 10 8 7 12 12 N 1.34776 * 119.99991 * 61.44767 * 10 8 7 13 13 C 1.46500 * 119.99640 * 179.97438 * 12 10 8 14 14 C 1.53007 * 109.46620 * 180.02562 * 13 12 10 15 15 H 1.08996 * 109.68063 * 300.08945 * 14 13 12 16 16 C 1.53293 * 109.67966 * 179.54006 * 14 13 12 17 17 O 1.42958 * 109.22493 * 187.97506 * 16 14 13 18 18 C 1.42962 * 114.16560 * 62.57843 * 17 16 14 19 19 C 1.53295 * 109.22305 * 297.42214 * 18 17 16 20 20 N 1.47145 * 109.68269 * 60.61221 * 14 13 12 21 21 C 1.36943 * 120.98100 * 350.28025 * 20 14 13 22 22 H 1.07992 * 120.00106 * 31.19458 * 21 20 14 23 23 C 1.38814 * 119.99648 * 211.19565 * 21 20 14 24 24 N 1.31616 * 120.00282 * 10.72573 * 23 21 20 25 25 Si 1.86795 * 119.99653 * 190.73114 * 23 21 20 26 26 H 1.48499 * 109.47324 * 90.00111 * 25 23 21 27 27 H 1.48505 * 109.46987 * 209.99488 * 25 23 21 28 28 H 1.48499 * 109.47490 * 329.99601 * 25 23 21 29 29 C 1.47424 * 125.65270 * 180.02562 * 5 3 2 30 30 H 1.09005 * 109.47206 * 60.00058 * 1 2 3 31 31 H 1.08996 * 109.47097 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47169 * 300.00513 * 1 2 3 33 33 H 1.08999 * 109.47567 * 240.00143 * 2 1 3 34 34 H 1.08995 * 109.47359 * 119.99798 * 2 1 3 35 35 H 1.09002 * 109.87909 * 59.54637 * 6 5 3 36 36 H 1.08993 * 110.00704 * 298.45715 * 6 5 3 37 37 H 1.08993 * 110.71853 * 219.44430 * 7 6 5 38 38 H 1.08997 * 110.86833 * 96.24218 * 7 6 5 39 39 H 0.97001 * 119.99645 * 0.28081 * 12 10 8 40 40 H 1.08991 * 109.47789 * 300.00231 * 13 12 10 41 41 H 1.08998 * 109.46779 * 60.00710 * 13 12 10 42 42 H 1.09004 * 109.51169 * 307.89935 * 16 14 13 43 43 H 1.09008 * 109.51705 * 68.04757 * 16 14 13 44 44 H 1.09001 * 109.51158 * 177.49844 * 18 17 16 45 45 H 1.08996 * 109.51385 * 57.34262 * 18 17 16 46 46 H 1.09005 * 109.68089 * 292.57701 * 19 18 17 47 47 H 1.08999 * 109.71494 * 172.04672 * 19 18 17 48 48 H 0.96998 * 120.00316 * 180.02562 * 24 23 21 49 49 H 1.09002 * 110.36599 * 85.26252 * 29 5 3 50 50 H 1.09007 * 110.36260 * 322.94885 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 0.0005 6 6 4.4182 0.6491 0.0017 7 6 5.7690 1.3949 -0.0248 8 6 5.3894 2.7806 -0.6104 9 1 5.3420 2.7452 -1.6988 10 6 6.3524 3.8442 -0.1490 11 8 5.9517 4.7806 0.5093 12 7 7.6588 3.7546 -0.4680 13 6 8.5947 4.7888 -0.0199 14 6 10.0029 4.4504 -0.5133 15 1 10.3102 3.4847 -0.1123 16 6 10.9845 5.5358 -0.0568 17 8 12.2542 5.3122 -0.6746 18 6 12.2346 5.4011 -2.1014 19 6 11.3170 4.3089 -2.6626 20 7 10.0147 4.4028 -1.9840 21 6 8.8481 4.4453 -2.7000 22 1 7.9986 4.9905 -2.3163 23 6 8.7577 3.7875 -3.9190 24 7 9.7069 2.9542 -4.2892 25 14 7.2889 4.0850 -5.0340 26 1 7.5830 5.2173 -5.9487 27 1 7.0172 2.8622 -5.8317 28 1 6.0987 4.4120 -4.2084 29 6 3.9833 3.0019 0.0011 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 4.3263 0.0170 -0.8816 36 1 4.3489 0.0393 0.9025 37 1 6.4793 0.8832 -0.6741 38 1 6.1746 1.4995 0.9815 39 1 7.9785 3.0077 -0.9979 40 1 8.2905 5.7541 -0.4244 41 1 8.5920 4.8340 1.0691 42 1 10.6054 6.5154 -0.3480 43 1 11.0947 5.4947 1.0269 44 1 13.2441 5.2630 -2.4886 45 1 11.8600 6.3801 -2.4000 46 1 11.7573 3.3289 -2.4780 47 1 11.1839 4.4553 -3.7344 48 1 9.6439 2.4949 -5.1412 49 1 4.0676 3.3809 1.0197 50 1 3.4061 3.6918 -0.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051196421.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:54 Heat of formation + Delta-G solvation = -91.392658 kcal Electronic energy + Delta-G solvation = -31019.223015 eV Core-core repulsion = 26854.183241 eV Total energy + Delta-G solvation = -4165.039774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.41120 -39.32060 -38.45198 -37.09600 -35.37787 -33.65772 -33.08869 -32.07805 -31.26924 -30.43154 -29.23438 -27.31100 -26.15421 -24.86486 -23.52416 -22.84622 -22.34003 -21.50495 -19.84831 -19.48131 -19.22571 -17.55394 -17.25738 -16.67454 -15.96866 -15.94237 -15.65597 -15.39257 -14.99007 -14.87248 -14.64787 -14.39447 -14.02589 -13.86249 -13.66088 -13.40977 -13.31888 -13.00300 -12.89631 -12.67061 -12.48599 -12.35693 -12.08929 -11.89577 -11.76152 -11.63699 -11.39230 -11.24693 -11.13178 -10.96743 -10.90071 -10.80411 -10.47419 -10.31005 -10.12252 -9.93093 -9.73012 -9.48431 -9.03195 -8.76356 -8.72738 -8.35514 -6.80936 -5.98554 -3.48839 2.54652 2.81306 3.02467 3.21690 3.30440 3.32967 3.70435 4.22167 4.26593 4.40022 4.48163 4.62656 4.76978 4.85657 4.92037 5.07025 5.15201 5.18652 5.20107 5.28056 5.39644 5.45234 5.53348 5.56256 5.66068 5.68169 5.70971 5.79676 5.83624 5.93016 5.96541 5.98670 6.02663 6.06318 6.10688 6.16976 6.20108 6.27610 6.46551 6.69012 7.00920 7.01300 7.39950 7.42564 7.62524 7.81196 8.06895 8.10831 8.21479 8.71070 8.97764 9.58100 10.17424 11.07554 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015058 B = 0.003098 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.005867 B = 9034.990371 C =10068.098333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.525 3.475 4 O -0.541 6.541 5 N -0.622 5.622 6 C 0.102 3.898 7 C -0.122 4.122 8 C -0.124 4.124 9 H 0.113 0.887 10 C 0.521 3.479 11 O -0.559 6.559 12 N -0.690 5.690 13 C 0.135 3.865 14 C 0.126 3.874 15 H 0.042 0.958 16 C 0.056 3.944 17 O -0.392 6.392 18 C 0.035 3.965 19 C 0.144 3.856 20 N -0.591 5.591 21 C -0.257 4.257 22 H 0.074 0.926 23 C 0.011 3.989 24 N -0.899 5.899 25 Si 0.894 3.106 26 H -0.286 1.286 27 H -0.289 1.289 28 H -0.277 1.277 29 C 0.127 3.873 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.416 0.584 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.040 0.960 46 H 0.030 0.970 47 H 0.092 0.908 48 H 0.256 0.744 49 H 0.082 0.918 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 -7.492 7.649 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.314 3.686 4 O -0.418 6.418 5 N -0.357 5.357 6 C -0.021 4.021 7 C -0.160 4.160 8 C -0.146 4.146 9 H 0.131 0.869 10 C 0.306 3.694 11 O -0.439 6.439 12 N -0.341 5.341 13 C 0.011 3.989 14 C 0.018 3.982 15 H 0.059 0.941 16 C -0.024 4.024 17 O -0.311 6.311 18 C -0.043 4.043 19 C 0.018 3.982 20 N -0.317 5.317 21 C -0.386 4.386 22 H 0.091 0.909 23 C -0.189 4.189 24 N -0.542 5.542 25 Si 0.723 3.277 26 H -0.212 1.212 27 H -0.215 1.215 28 H -0.203 1.203 29 C 0.005 3.995 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.254 0.746 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.110 0.890 48 H 0.066 0.934 49 H 0.100 0.900 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.489 -6.514 8.055 12.224 hybrid contribution -0.572 -0.219 -1.345 1.478 sum -7.061 -6.733 6.710 11.841 Atomic orbital electron populations 1.21538 0.93031 1.01500 1.03408 1.21615 0.98485 0.93569 1.04255 1.20464 0.80264 0.91947 0.75900 1.90712 1.54306 1.46803 1.50026 1.48588 1.05222 1.08330 1.73526 1.22066 0.86691 0.91333 1.02031 1.22650 0.96513 0.94050 1.02788 1.22446 0.94570 0.94815 1.02812 0.86925 1.19944 0.83068 0.86385 0.79999 1.90666 1.78013 1.34493 1.40715 1.45983 1.06706 1.27667 1.53710 1.21176 0.88381 0.92039 0.97310 1.21425 0.92394 0.96878 0.87459 0.94087 1.22869 0.85060 0.97837 0.96586 1.87803 1.29856 1.92877 1.20569 1.23352 1.00439 0.99939 0.80598 1.21419 0.84038 0.94118 0.98602 1.44082 1.02755 1.86731 0.98114 1.19245 0.91726 1.25940 1.01685 0.90876 1.25129 0.97620 0.96410 0.99703 1.69973 1.33764 1.28333 1.22148 0.86426 0.82604 0.77463 0.81160 1.21229 1.21537 1.20251 1.21993 0.90990 0.84300 1.02228 0.91955 0.92084 0.91999 0.88931 0.89016 0.90862 0.90984 0.88606 0.89878 0.74578 0.91483 0.92255 0.93499 0.89909 0.90231 0.94119 0.95238 0.88966 0.93402 0.90001 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.20 37.16 0.34 -0.85 16 2 C -0.14 -1.21 5.61 -27.88 -0.16 -1.36 16 3 C 0.53 6.91 7.85 -10.98 -0.09 6.83 16 4 O -0.54 -9.36 16.24 5.56 0.09 -9.27 16 5 N -0.62 -7.73 3.33 -170.50 -0.57 -8.30 16 6 C 0.10 0.93 6.49 -3.06 -0.02 0.91 16 7 C -0.12 -1.26 6.37 -24.90 -0.16 -1.42 16 8 C -0.12 -1.74 3.43 -89.61 -0.31 -2.04 16 9 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16 10 C 0.52 8.88 7.16 -10.98 -0.08 8.80 16 11 O -0.56 -11.20 15.80 5.56 0.09 -11.11 16 12 N -0.69 -11.82 3.73 -60.29 -0.23 -12.05 16 13 C 0.14 2.35 4.45 -4.04 -0.02 2.33 16 14 C 0.13 2.31 3.21 -67.42 -0.22 2.09 16 15 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 16 C 0.06 0.94 6.29 37.31 0.23 1.18 16 17 O -0.39 -7.37 10.74 -35.23 -0.38 -7.75 16 18 C 0.03 0.64 6.98 37.31 0.26 0.90 16 19 C 0.14 3.13 5.38 -3.54 -0.02 3.11 16 20 N -0.59 -12.91 3.03 -164.31 -0.50 -13.41 16 21 C -0.26 -6.03 7.05 -15.06 -0.11 -6.13 16 22 H 0.07 1.76 5.81 -52.49 -0.30 1.46 16 23 C 0.01 0.27 5.06 -17.43 -0.09 0.19 16 24 N -0.90 -23.08 11.14 55.49 0.62 -22.46 16 25 Si 0.89 19.99 29.57 -169.99 -5.03 14.96 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 29 C 0.13 1.86 5.97 -2.52 -0.02 1.84 16 30 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 39 H 0.42 7.36 7.30 -40.82 -0.30 7.07 16 40 H 0.07 1.29 7.56 -51.93 -0.39 0.90 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.09 2.23 6.33 -51.93 -0.33 1.90 16 48 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 49 H 0.08 1.28 7.51 -51.93 -0.39 0.89 16 50 H 0.08 1.34 8.04 -51.92 -0.42 0.92 16 LS Contribution 394.47 15.07 5.94 5.94 Total: -1.00 -30.49 394.47 -8.83 -39.32 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -8.44 Total: 7.76 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: -0.43 Total: 16.36 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.67 Total: -56.22 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.20 Total: -28.13 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.49 -8.83 -39.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051196421.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.070 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds