Wall clock time and date at job start Sat Apr 11 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47599 * 2 1 4 4 O 1.21282 * 119.99880 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99939 * 179.97438 * 3 2 1 6 6 C 1.47021 * 125.65050 * 359.97438 * 5 3 2 7 7 C 1.54318 * 107.27154 * 178.98098 * 6 5 3 8 8 C 1.55162 * 102.94445 * 337.80649 * 7 6 5 9 9 H 1.08990 * 111.00164 * 277.38985 * 8 7 6 10 10 C 1.50704 * 111.00301 * 153.57532 * 8 7 6 11 11 O 1.21285 * 119.99544 * 241.45292 * 10 8 7 12 12 N 1.34771 * 119.99968 * 61.45514 * 10 8 7 13 13 C 1.46503 * 119.99646 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.46877 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.68018 * 59.76615 * 14 13 12 16 16 C 1.53296 * 109.68076 * 180.32407 * 14 13 12 17 17 O 1.42967 * 109.22159 * 172.02484 * 16 14 13 18 18 C 1.42955 * 114.16480 * 297.41319 * 17 16 14 19 19 C 1.53301 * 109.22023 * 62.58784 * 18 17 16 20 20 N 1.47150 * 108.38360 * 307.69348 * 19 18 17 21 21 C 1.36942 * 120.98258 * 230.51697 * 20 19 18 22 22 H 1.07997 * 120.00048 * 149.51195 * 21 20 19 23 23 C 1.38804 * 119.99636 * 329.51120 * 21 20 19 24 24 N 1.31626 * 119.99748 * 163.16333 * 23 21 20 25 25 Si 1.86797 * 120.00509 * 343.16569 * 23 21 20 26 26 H 1.48497 * 109.47305 * 88.95795 * 25 23 21 27 27 H 1.48501 * 109.46979 * 208.95668 * 25 23 21 28 28 H 1.48495 * 109.46828 * 328.95626 * 25 23 21 29 29 C 1.47421 * 125.64596 * 180.02562 * 5 3 2 30 30 H 1.09006 * 109.46840 * 300.00331 * 1 2 3 31 31 H 1.08995 * 109.46746 * 59.99194 * 1 2 3 32 32 H 1.08993 * 109.47715 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46840 * 239.99669 * 2 1 3 34 34 H 1.09004 * 109.46958 * 120.00666 * 2 1 3 35 35 H 1.08997 * 109.88142 * 59.56429 * 6 5 3 36 36 H 1.09001 * 110.01045 * 298.47224 * 6 5 3 37 37 H 1.08999 * 110.72370 * 219.43970 * 7 6 5 38 38 H 1.09006 * 110.72170 * 96.16930 * 7 6 5 39 39 H 0.96994 * 120.00020 * 0.02562 * 12 10 8 40 40 H 1.08997 * 109.47177 * 59.99919 * 13 12 10 41 41 H 1.09003 * 109.46850 * 299.99911 * 13 12 10 42 42 H 1.09006 * 109.51352 * 291.94490 * 16 14 13 43 43 H 1.08999 * 109.51342 * 52.09736 * 16 14 13 44 44 H 1.08999 * 109.51822 * 302.66170 * 18 17 16 45 45 H 1.08998 * 109.51150 * 182.50172 * 18 17 16 46 46 H 1.08996 * 109.68086 * 187.97065 * 19 18 17 47 47 H 1.08997 * 109.68373 * 67.41727 * 19 18 17 48 48 H 0.97000 * 120.00172 * 179.97438 * 24 23 21 49 49 H 1.09008 * 110.36328 * 85.24873 * 29 5 3 50 50 H 1.09003 * 110.37157 * 322.93030 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2444 2.3426 0.0005 5 7 3.3575 1.6669 0.0005 6 6 4.4182 0.6488 0.0017 7 6 5.7690 1.3945 -0.0243 8 6 5.3898 2.7805 -0.6097 9 1 5.3426 2.7452 -1.6980 10 6 6.3527 3.8438 -0.1478 11 8 5.9518 4.7801 0.5106 12 7 7.6591 3.7542 -0.4665 13 6 8.5950 4.7882 -0.0179 14 6 10.0033 4.4499 -0.5111 15 1 10.0089 4.4003 -1.6000 16 6 10.9883 5.5249 -0.0374 17 8 12.3217 5.1080 -0.3407 18 6 12.7262 3.9098 0.3258 19 6 11.8303 2.7520 -0.1293 20 7 10.4260 3.1552 0.0462 21 6 9.5386 2.3493 0.7082 22 1 8.7173 2.7865 1.2565 23 6 9.6948 0.9705 0.6744 24 7 9.0701 0.2157 1.5534 25 14 10.7914 0.1860 -0.6184 26 1 12.1821 0.1039 -0.1042 27 1 10.2957 -1.1798 -0.9253 28 1 10.7681 1.0102 -1.8534 29 6 3.9834 3.0017 0.0011 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 4.3265 0.0170 -0.8818 36 1 4.3487 0.0388 0.9023 37 1 6.4796 0.8829 -0.6736 38 1 6.1716 1.4985 0.9833 39 1 7.9795 3.0055 -0.9934 40 1 8.5921 4.8332 1.0712 41 1 8.2909 5.7536 -0.4223 42 1 10.7754 6.4641 -0.5480 43 1 10.8860 5.6635 1.0389 44 1 12.6303 4.0424 1.4035 45 1 13.7636 3.6869 0.0765 46 1 12.0368 1.8686 0.4749 47 1 12.0204 2.5317 -1.1797 48 1 9.1789 -0.7479 1.5296 49 1 4.0675 3.3807 1.0197 50 1 3.4065 3.6915 -0.6148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051196422.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:58 Heat of formation + Delta-G solvation = -84.964196 kcal Electronic energy + Delta-G solvation = -31290.656871 eV Core-core repulsion = 27125.895856 eV Total energy + Delta-G solvation = -4164.761015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.28277 -39.34658 -38.63648 -36.96193 -35.51333 -33.73848 -32.97167 -32.07342 -31.48222 -30.84497 -29.01511 -27.62996 -26.14260 -24.83815 -23.52249 -22.80546 -22.30572 -21.69885 -20.03518 -19.42517 -19.06827 -17.48340 -17.15793 -16.65396 -16.18176 -15.94315 -15.72429 -15.29703 -15.08687 -15.06577 -14.76141 -14.44587 -14.15826 -14.03492 -13.61586 -13.44305 -13.25118 -12.92750 -12.77264 -12.61507 -12.36016 -12.22690 -12.22391 -11.92966 -11.84304 -11.69314 -11.52147 -11.28171 -11.21545 -11.03988 -10.85054 -10.66173 -10.61598 -10.42146 -9.90225 -9.80438 -9.72274 -9.54398 -9.25543 -8.78087 -8.58326 -8.36870 -7.11653 -6.14107 -3.57222 2.66784 2.94039 3.10967 3.15184 3.32087 3.32273 3.72551 4.23235 4.32262 4.39041 4.56964 4.67802 4.80455 4.94601 4.98493 5.10928 5.11971 5.31606 5.33846 5.36459 5.41961 5.44684 5.51093 5.61292 5.66020 5.70644 5.72744 5.80681 5.83064 5.84384 5.92444 5.96210 6.05599 6.07562 6.10507 6.16351 6.23827 6.26657 6.28187 6.43521 6.53362 6.64944 7.01145 7.53310 7.55194 7.70905 8.10538 8.15260 8.19511 8.68252 8.74978 9.48489 9.86176 10.99025 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016565 B = 0.003223 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.859669 B = 8685.017693 C =10037.115443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 C 0.525 3.475 4 O -0.547 6.547 5 N -0.620 5.620 6 C 0.101 3.899 7 C -0.113 4.113 8 C -0.123 4.123 9 H 0.104 0.896 10 C 0.525 3.475 11 O -0.559 6.559 12 N -0.691 5.691 13 C 0.136 3.864 14 C 0.128 3.872 15 H 0.046 0.954 16 C 0.054 3.946 17 O -0.388 6.388 18 C 0.046 3.954 19 C 0.091 3.909 20 N -0.607 5.607 21 C -0.267 4.267 22 H 0.098 0.902 23 C 0.033 3.967 24 N -0.899 5.899 25 Si 0.878 3.122 26 H -0.288 1.288 27 H -0.303 1.303 28 H -0.272 1.272 29 C 0.129 3.871 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.412 0.588 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.034 0.966 48 H 0.263 0.737 49 H 0.082 0.918 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.818 -0.447 -5.433 7.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.315 3.685 4 O -0.424 6.424 5 N -0.354 5.354 6 C -0.022 4.022 7 C -0.151 4.151 8 C -0.145 4.145 9 H 0.122 0.878 10 C 0.310 3.690 11 O -0.438 6.438 12 N -0.342 5.342 13 C 0.012 3.988 14 C 0.022 3.978 15 H 0.064 0.936 16 C -0.025 4.025 17 O -0.307 6.307 18 C -0.032 4.032 19 C -0.034 4.034 20 N -0.333 5.333 21 C -0.394 4.394 22 H 0.115 0.885 23 C -0.167 4.167 24 N -0.541 5.541 25 Si 0.708 3.292 26 H -0.216 1.216 27 H -0.231 1.231 28 H -0.197 1.197 29 C 0.006 3.994 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.249 0.751 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.052 0.948 48 H 0.074 0.926 49 H 0.100 0.900 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.530 0.606 -5.023 7.495 hybrid contribution 0.992 -1.347 -0.741 1.830 sum -4.538 -0.741 -5.764 7.373 Atomic orbital electron populations 1.21529 0.93136 1.01415 1.03292 1.21614 0.98334 0.93703 1.04363 1.20436 0.80324 0.91877 0.75900 1.90693 1.54423 1.46813 1.50506 1.48602 1.05238 1.08449 1.73122 1.22127 0.86866 0.91284 1.01923 1.22618 0.95443 0.92437 1.04578 1.22411 0.94552 0.95801 1.01779 0.87812 1.19970 0.82949 0.86074 0.80007 1.90668 1.78240 1.34641 1.40269 1.45888 1.06389 1.27172 1.54713 1.21142 0.87386 0.89877 1.00403 1.21451 0.92111 0.87667 0.96621 0.93638 1.22914 0.82861 0.96653 1.00058 1.87832 1.29870 1.42677 1.70290 1.23066 0.97957 0.85747 0.96456 1.22055 0.85293 0.97024 0.99065 1.44444 1.04791 1.18662 1.65450 1.19030 1.08791 0.87066 1.24559 0.88469 1.25283 0.97615 0.96079 0.97741 1.69796 1.44920 1.05056 1.34294 0.87081 0.80160 0.78076 0.83849 1.21588 1.23126 1.19721 1.21958 0.90815 0.84290 1.02305 0.92013 0.92079 0.92152 0.89021 0.88890 0.91328 0.90819 0.88837 0.88298 0.75054 0.91094 0.92066 0.89377 0.92899 0.93000 0.89782 0.90023 0.94845 0.92647 0.90014 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.20 37.16 0.34 -0.96 16 2 C -0.14 -1.40 5.61 -27.88 -0.16 -1.55 16 3 C 0.53 7.46 7.85 -10.99 -0.09 7.38 16 4 O -0.55 -9.76 16.24 5.56 0.09 -9.67 16 5 N -0.62 -8.58 3.33 -170.52 -0.57 -9.15 16 6 C 0.10 1.21 6.49 -3.07 -0.02 1.19 16 7 C -0.11 -1.61 6.37 -24.90 -0.16 -1.77 16 8 C -0.12 -1.77 3.43 -89.61 -0.31 -2.08 16 9 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 10 C 0.52 9.06 7.16 -10.99 -0.08 8.99 16 11 O -0.56 -11.36 15.80 5.55 0.09 -11.28 16 12 N -0.69 -11.71 3.72 -60.29 -0.22 -11.93 16 13 C 0.14 2.29 4.44 -4.04 -0.02 2.27 16 14 C 0.13 2.19 3.21 -67.42 -0.22 1.98 16 15 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 16 C 0.05 0.84 6.29 37.31 0.23 1.07 16 17 O -0.39 -6.64 10.74 -35.23 -0.38 -7.02 16 18 C 0.05 0.77 6.98 37.31 0.26 1.03 16 19 C 0.09 1.77 4.38 -3.53 -0.02 1.75 16 20 N -0.61 -12.28 2.78 -164.30 -0.46 -12.74 16 21 C -0.27 -6.10 7.54 -15.06 -0.11 -6.21 16 22 H 0.10 2.44 5.98 -52.49 -0.31 2.12 16 23 C 0.03 0.80 5.28 -17.43 -0.09 0.70 16 24 N -0.90 -23.16 13.97 55.49 0.78 -22.39 16 25 Si 0.88 19.38 24.28 -169.99 -4.13 15.26 16 26 H -0.29 -6.37 6.54 56.52 0.37 -6.00 16 27 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.27 -5.94 6.65 56.52 0.38 -5.57 16 29 C 0.13 1.97 5.97 -2.53 -0.02 1.96 16 30 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.10 1.75 8.03 -51.93 -0.42 1.33 16 39 H 0.41 7.06 7.33 -40.82 -0.30 6.76 16 40 H 0.07 1.35 7.56 -51.93 -0.39 0.96 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.08 1.72 4.89 -51.93 -0.25 1.46 16 47 H 0.03 0.66 6.82 -51.93 -0.35 0.31 16 48 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 49 H 0.08 1.41 7.51 -51.92 -0.39 1.02 16 50 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -29.75 387.88 -7.76 -37.52 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -8.37 Total: 9.80 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: -0.44 Total: 15.76 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.47 Total: -56.21 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.20 Total: -27.97 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.13 Total: 15.26 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.75 -7.76 -37.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051196422.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.445 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds